BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15060.1

Length=1171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg350644 jgi|Araly1|350644|fgenesh1_pg.C_scaffold_6001237           324    1e-87


> Ahg350644 jgi|Araly1|350644|fgenesh1_pg.C_scaffold_6001237
Length=987

 Score =  324 bits (175),  Expect = 1e-87
 Identities = 409/515 (79%), Gaps = 44/515 (9%)
 Strand=Plus/Plus

Query  87   GATGCCTAACAAACTCATTTTCTTCTTGATTCTCACATCAGATCAGTCATCATCTTGATG  146
            ||||| ||||| |||| ||||||||||||||||  || |  |||||||||||||||||||
Sbjct  9    GATGCGTAACAGACTCGTTTTCTTCTTGATTCT--CA-C--ATCAGTCATCATCTTGATG  63

Query  147  ACATTGCAAGGCTCTTCCGGCGTAAATAACGGCGGTTATGTC-AACCAATGCGCCGCTTG  205
            ||||  ||||||||||||||||||||| |||||||| |  || |||| ||||| ||||||
Sbjct  64   ACATCACAAGGCTCTTCCGGCGTAAATTACGGCGGTAACATCGAACC-ATGCGTCGCTTG  122

Query  206  CAGGCACCAACGCCGTCGTTGCACACCGGACTGTTTCTTTCGTCCTT-ACTTTCCGGCGG  264
            || ||||||||||||||||||||||||||||||| ||||||||| || | ||||||| ||
Sbjct  123  CAAGCACCAACGCCGTCGTTGCACACCGGACTGTATCTTTCGTC-TTCATTTTCCGGTGG  181

Query  265  -AGCGACATCAAGAGTTCCAAAACTTTCATCGTCTACATTC--CAATAC-CCGTCTCCaa  320
             | ||| ||||||| ||||||||| |||| |||| | ||||  |  | | |||| |   |
Sbjct  182  GA-CGATATCAAGATTTCCAAAACGTTCACCGTC-A-ATTCGGCG-TCCGCCGTGTGGTA  237

Query  321  aaaaaGCTCAAAGAATTAGGATTGTCTCCGGAGGAACAAAGAGAAGCAATGAGCTCGATC  380
             |||| ||| || |||| ||   | | | ||||| || | |||| |||||||  ||||| 
Sbjct  238  GAAAATCTCGAA-AATTTGGC--G-C-C-GGAGGTACGAGGAGACGCAATGAAATCGATT  291

Query  381  ATATACGAATCCAACATACGCTCTCAATTCCCCGGCCCGTCGGTGGCTGTCACGAA-TAC  439
            ||||||||||||||| | ||||||||||||||||     ||| ||||||| ||| | | |
Sbjct  292  ATATACGAATCCAACGTGCGCTCTCAATTCCCCG-----TCGATGGCTGTTACGGAGT-C  345

Query  440  ATTTTCCATCTTCGAACCCAAATCGCACTCGTCACCGCTGAACTACGTCGCACCCGTGAT  499
            |||||  |||| | || ||||||||||||| ||| ||||||||||| ||||||||||  |
Sbjct  346  ATTTTATATCTCCAAAACCAAATCGCACTCCTCAACGCTGAACTACTTCGCACCCGTTCT  405

Query  500  CAAATCACCGCCG-CTTT-CTTCAATCCCA-CC--GCCGCCAGCTT-CTTTAATTCC---  550
            ||| ||||||||| | |  |  || ||| | ||  || ||| |||| ||| ||| ||   
Sbjct  406  CAACTCACCGCCGTCGTCGCCGCA-TCCAATCCAAGC-GCC-GCTTTCTTCAATCCCACC  462

Query  551  GCCGCTAACAACTTCTTAGATCCCTCCT-CCGCCG  584
            ||||| |||||||||||  ||||||| | ||||||
Sbjct  463  GCCGCCAACAACTTCTTTCATCCCTC-TGCCGCCG  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43688862882


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5