BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15080.1
Length=2015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940990 jgi|Araly1|940990|scaffold_601534.1 2335 0.0
Ahg927644 jgi|Araly1|927644|scaffold_300101.1 987 0.0
> Ahg940990 jgi|Araly1|940990|scaffold_601534.1
Length=1550
Score = 2335 bits (1264), Expect = 0.0
Identities = 1460/1549 (94%), Gaps = 35/1549 (2%)
Strand=Plus/Plus
Query 280 TCTCTGTCTGTCTTTGGTGAGATGGGTTTGGATGCTGTTAAAGCTAAAGGGAATTGGAAA 339
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TCTTTGTCTGTCTTTGGTGAGATGGGTTTGGATGCTGTTAAAGCTAAGGGGAATTGGAAA 60
Query 340 TCGGAGAAACCTAAAGAGACTGagaataagaatcacaagaag-a-ag-aatggtgatgat 396
|||||||||||||||||||||||||||||| | ||||||| | || ||||||||||||
Sbjct 61 TCGGAGAAACCTAAAGAGACTGAGAATAAG-A--GCAAGAAGAATAGCAATGGTGATGAT 117
Query 397 aat---aaaagtagaaatgaagaagaagaaga-aggagaagcaagTGGTTGCTGGGTCAA 452
||| ||||||||| |||| ||||||| ||| || |||||||||||| || ||||| ||
Sbjct 118 AATAACAAAAGTAGAGATGACGAAGAAG-AGACAGAAGAAGCAAGTGGGTGTTGGGTTAA 176
Query 453 ATTTAGGTTTATGATTGGTTGCATACCTTCAAAATCAGACCTTGATGCTTCTTCTTC-T- 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 ATTTAGGTTTATGATTGGTTGCATACCTTCAAAATCAGACCTTGATGCTTCTTCTTCTTC 236
Query 511 T-CTATCTATGGCTCTAACTGCACTGTTACAACAATGGAAAGTAAATCGGCAAATGAGAA 569
| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||
Sbjct 237 TACTATCTATGGCTCTACCTGCACTGTTGCAACAATTGAAAGTAAATCGGCAAATGAGAA 296
Query 570 ATCAAATGATCAACCAG-T--TGGTCAAGTTTCCTCCACAACAACAACTAGCAATGCAGA 626
|| ||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 297 ATTAAACGATCAACCAGTTGGTGGTCCAGTTTCCTCCACAACAACAACTAGCAATGCAGA 356
Query 627 AAGCTCTTCATCTACTCCAGTCATCAGTGAAGAACTTAACATTTCTTCTCACCTCCGGAA 686
||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||
Sbjct 357 AAGCTCTTCATCTACTCCAATGATCAGTGAAGAACTTAAGATTTCTTCTCACCTCAGGAA 416
Query 687 GTTTACTTTCAATGATCTTAAGCTATCTACTAGAAATTTCAGACCCGAGAGTCTTCTTGG 746
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 417 GTTTACTTTCAATGATCTTAAGCTATCAACTAGAAATTTCAGACCGGAGAGTCTTCTTGG 476
Query 747 AGAAGGTGGTTTTGGTTGTGTCTTTAAAGGATGGATCGAAGAAAACGGTACTGCTCCTGT 806
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 477 AGAAGGTGGTTTTGGTTGTGTCTTCAAAGGATGGATCGAAGAAAACGGAACTGCTCCTGT 536
Query 807 TAAACCTGGTACTGGTCTTACGGTTGCAGTCAAAACCTTAAATCCTGATGGACTTCAAGG 866
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 537 TAAACCTGGTACTGGCCTTACAGTTGCAGTTAAAACCTTAAATCCTGATGGACTTCAAGG 596
Query 867 TCACAAAGAATGGCTTGCTGAGATTAATTTCCTTGGTAACCTTCTCCATCCAAATCTAGT 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCACAAAGAATGGCTTGCTGAGATTAATTTCCTTGGTAACCTTCTCCATCCAAATCTAGT 656
Query 927 TAAGCTTGTTGGTTATTGCATTGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCC 986
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 TAAGCTGGTTGGTTATTGCATCGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCC 716
Query 987 TAGAGGAAGTCTGGAGAATCACCTTTTCAGAAGGTCCTTGCCTCTTCCTTGGTCTATCCG 1046
| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 TCGAGGAAGTTTAGAGAATCACCTTTTCAGAAGGTCGTTGCCTCTTCCTTGGTCTATCCG 776
Query 1047 GATGAAGATTGCATTAGGTGCTGCAAAAGGTCTCAGTTTCCTCCATGAAGAAGCTTTGAA 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GATGAAGATTGCATTAGGTGCTGCAAAAGGTCTCAGTTTCCTCCATGAAGAAGCTTTGAA 836
Query 1107 GCCTGTTATATATCGAGATTTCAAAACATCAAACATTTTACTTGATGCAGACTACAATGC 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GCCTGTTATATATCGAGATTTCAAAACATCAAACATTTTACTTGATGCAGACTACAATGC 896
Query 1167 AAAACTATCAGATTTTGGACTTGCCAAAGATGCTCCTGATGAAGGCAAAACCCATGTTTC 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AAAACTATCAGATTTTGGACTTGCCAAAGATGCTCCTGATGAAGGCAAAACCCATGTTTC 956
Query 1227 TACTAGGGTTATGGGTACATATGGCTATGCTGCTCCCGAATATGTAATGACCGGTCACTT 1286
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TACTCGGGTTATGGGAACATATGGCTATGCTGCTCCCGAATATGTAATGACCGGTCACTT 1016
Query 1287 GACATCAAAGAGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGGACG 1346
|||||||||||||||||| |||||||||||||||||||| || |||||| ||||||| ||
Sbjct 1017 GACATCAAAGAGCGATGTCTATAGTTTTGGGGTGGTTCTGCTGGAAATGCTGACTGGGCG 1076
Query 1347 ACGATCTATGGACAAAAACCGCCCAAATGGTGAGCACAACTTAGTGGAATGGGCAAGACC 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ACGATCTATGGACAAAAACCGCCCAAATGGTGAGCACAACTTAGTGGAATGGGCAAGACC 1136
Query 1407 GCATCTTCTTGACAAGAGAAGGTTTTACCGGTTACTTGATCCGAGGCTTGAGGGCCATTT 1466
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ACATCTCCTTGACAAAAGAAGGTTTTACCGGTTACTTGATCCGAGGCTTGAGGGCCATTT 1196
Query 1467 TTCAATCAAAGGTGCTCAAAAAGTGACTCAGCTTGCTGCACAATGTCTTAGCCGTGACCC 1526
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1197 CTCAATCAAAGGTGCTCAAAAGGTGACTCAGCTTGCTGCACAGTGTCTTAGCCGTGACCC 1256
Query 1527 CAAGATTAGGCCAAAGATGAGTGATGTTGTGGAAGCACTTAAACCACTTCCGCATCTGAA 1586
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1257 CAAGATTAGGCCAAAGATGAGTGATGTTGTCGAAGCACTTAAACCACTTCCGCATCTCAA 1316
Query 1587 AGACATGGCAAGCTCTTCTTACTACTTCCAGACAATGCAAGCTGAACGTTTGAAAAATGG 1646
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1317 AGACATGGCGAGCTCTTCTTACTACTTCCAGACAATGCAAGCGGAACGTTTGAAAAATGG 1376
Query 1647 GTCAGGTCGATCCCA---AGGA------TTTGGATCAAGAAACGGGCAACACCAACCCGT 1697
|||||||||||| || |||| ||||||||||||||||||||||| ||||||||
Sbjct 1377 GTCAGGTCGATCTCAGGGAGGAAGCGGATTTGGATCAAGAAACGGGCAACATCAACCCGT 1436
Query 1698 GTTTCGAACACTGTCTAGTCCTCATGGT-----T----CTTCGCCTTATCGACATCAGAT 1748
|||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1437 GTTTCGAACACTGTCTAGTCCTCATGGTCAACATGGTTCTTCGCCTTATCGACATCAGAT 1496
Query 1749 TCCTTCGCCAAAGCCTAAAGGAGCAACTACATAGCTCTTACGTGGTGGA 1797
|||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1497 TCCTTCTCCAAAGCCTAAAGGAGCAACTACATAGCTCTTGCGTGGAGGA 1545
> Ahg927644 jgi|Araly1|927644|scaffold_300101.1
Length=1489
Score = 987 bits (534), Expect = 0.0
Identities = 961/1163 (83%), Gaps = 45/1163 (4%)
Strand=Plus/Plus
Query 292 TTT-GGTGAGATGGGTTTGGATGCTGTTAAAGCTAAAGG-GAATTGGAAATCGGAGAAAC 349
||| || ||||||||||| ||| |||| |||| | | || ||||||| ||||| ||| |
Sbjct 13 TTTGGGGGAGATGGGTTTAGATTCTGTCAAAG-TTATGGAGAATTGGCAATCGAAGACAT 71
Query 350 CTAAAGAGACTG---agaataag-a-atca-caagaagaagaatggtgatgataataaa- 402
|||| |||| || |||| ||| | | | | ||||||||| ||| | | |||
Sbjct 72 CTAATGAGAGTGATAAGAAGAAGAAGAGGAGGAGGAAGAAGAACAACAATG-TCAGAAAC 130
Query 403 agtagaa-atgaagaagaagaagaaggagaagc-aagTGGTTGCTGGGTCAAATTTAGGT 460
| | ||| ||| ||| |||||||||| |||||| || ||| || ||||||||||||||||
Sbjct 131 ACT-GAACATGTAGACGAAGAAGAAGAAGAAGCTAA-TGGGTGTTGGGTCAAATTTAGGT 188
Query 461 TTATGA-T-TGGTTGCATACCTTCAAAATCAGACCTTGATGCTTCTTCTTCTTCTA-TCT 517
|||| | | | ||||| | |||||| |||||| ||||| | || || || | |||
Sbjct 189 TTAT-AGTCT-GTTGCGTTTCTTCAACTTCAGACGTTGAT--AGC-TC-TC-TC-AGTCT 240
Query 518 ATGGCTCTAACTGCACTGTTACAACAATGGAAAGTAAATCGGCAAATGAGAAATCAAATG 577
| | | || |||||| ||| |||| | || |||| || |||||| ||||
Sbjct 241 CT-CCAC-AA--GCACTG---------TGGGAAGTCAGTCCGCAATTGTGAAATCGAATG 287
Query 578 ATCAACCAGTTGGTCAAGTTTCCTCCACAACAACAACTAGCAATGCAGAAAGCTCTTCAT 637
| ||||| ||||| | || || || || || ||||||||||||||||||||||||| |
Sbjct 288 ACCAACCGGTTGGCCCTGTCTCTTCTACCACTACAACTAGCAATGCAGAAAGCTCTTTGT 347
Query 638 CTACTCCAGTCATCAGTGAAGAACTTAACATTTCTTCTCACCTCCGGAAGTTTACTTTCA 697
| |||||| | || |||||||||||||| || | ||||||| | ||||||||||||||
Sbjct 348 CCACTCCAATGATAAGTGAAGAACTTAAGATCTATTCTCACTTAAAGAAGTTTACTTTCA 407
Query 698 ATGATCTTAAGCTATCTACTAGAAATTTCAGACCCGAGAGTCTTCTTGGAGAAGGTGGTT 757
|||||| ||| | |||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 408 TTGATCTCAAGTTGGCTACTAGAAATTTCAGACCCGAAAGTCTTCTCGGAGAAGGTGGCT 467
Query 758 TTGGTTGTGTCTTTAAAGGATGGATCGAAGAAAACGGTACTGCTCCTGTTAAACCTGGTA 817
||||||| ||||| ||||| ||| |||| || ||||| |||||||||||||| |||||||
Sbjct 468 TTGGTTGCGTCTTCAAAGGGTGGGTCGAGGAGAACGGAACTGCTCCTGTTAAGCCTGGTA 527
Query 818 CTGGTCTTACGGTTGCAGTCAAAACCTTAAATCCTGATGGACTTCAAGGTCACAAAGAAT 877
|||| || || || || |||||||||||||||||||| |||||||| ||||| ||||| |
Sbjct 528 CTGGGCTCACTGTAGCCGTCAAAACCTTAAATCCTGACGGACTTCAGGGTCATAAAGAGT 587
Query 878 GGCTTGCTGAGATTAATT-TCCTTGGTAACCTTCTCCATCCAAATCTAGTTAAGCTTGTT 936
|||||||||||||||||| | |||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 588 GGCTTGCTGAGATTAATTAT-CTTGGTAATCTTCTTCATCCCAATCTTGTTAAACTGGTG 646
Query 937 GGTTATTGCATTGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCCTAGAGGAAGT 996
|||||||| || ||||||||||||||| |||| || ||||||||||||||| ||||||||
Sbjct 647 GGTTATTGTATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTCGAGGAAGT 706
Query 997 CTGGAGAATCACCTTTTCAGAAGGTCCTTGCCTCTTCCTTGGTCTATCCGGATGAAGATT 1056
|||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 707 TTGGAGAATCACCTTTTTAGAAGGTCGTTGCCTCTTCCATGGTCAATTCGGATGAAGATT 766
Query 1057 GCATTAGGTGCTGCAAAAGGTCTCAGTTTCCTCCATGAAGAAGCTTTGAAGCCTGTTATA 1116
|| |||||||||||||| |||||||||||||| || ||||||||||| ||||| || ||
Sbjct 767 GCGTTAGGTGCTGCAAAGGGTCTCAGTTTCCTTCACGAAGAAGCTTTAAAGCCGGTCATT 826
Query 1117 TATCGAGATTTCAAAACATCAAACATTTTACTTGATGCAGACTACAATGCAAAACTATCA 1176
||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||| |||||
Sbjct 827 TATCGAGATTTCAAAACCTCAAATATTTTACTGGATGCAGAGTACAATGCTAAATTATCA 886
Query 1177 GATTTTGGACTTGCCAAAGATGCTCCTGATGAAGGCAAAACCCATGTTTCTACTAGGGTT 1236
|||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | ||
Sbjct 887 GATTTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGCGTC 946
Query 1237 ATGGGTACATATGGCTATGCTGCTCCCGAATATGTAATGACCGGTCACTTGACATCAAAG 1296
||||| || ||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 947 ATGGGCACTTATGGTTACGCTGCTCCCGAGTATGTAATGACCGGTCACTTGACATCAAAA 1006
Query 1297 AGCGATGTTTATAGTTTTGGGGTGGTTCTACTTGAAATGTTGACTGG-ACGACGATCTAT 1355
||||||||||| ||||| || |||||||| ||||||||| ||||||| | || |||||||
Sbjct 1007 AGCGATGTTTACAGTTTCGGTGTGGTTCTTCTTGAAATGCTGACTGGTA-GAAGATCTAT 1065
Query 1356 GGACAAAAACCGCCCAAATGGTGAGCACAAC-TTAGTGGAATGGGCAAGACCGCATCTTC 1414
|||||||||||| ||||| ||||| |||||| || || |||||||| ||||||||||| |
Sbjct 1066 GGACAAAAACCGACCAAACGGTGAACACAACCTT-GTCGAATGGGCGAGACCGCATCTCC 1124
Query 1415 TTGACAAGAGAAGGTTTTACCGG 1437
| ||||| ||||| || ||||||
Sbjct 1125 TGGACAAAAGAAGATTCTACCGG 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75761497305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5