BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15090.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488350 jgi|Araly1|488350|fgenesh2_kg.6__1484__AT5G15090.1 1537 0.0
> Ahg488350 jgi|Araly1|488350|fgenesh2_kg.6__1484__AT5G15090.1
Length=1051
Score = 1537 bits (832), Expect = 0.0
Identities = 988/1060 (93%), Gaps = 24/1060 (2%)
Strand=Plus/Plus
Query 21 ACCTCATTTTCTCCAGAATCCTCCATTA--C-TCTTCTTCTCGACTTCGGAATCTTTCA- 76
||| |||||||||||||||||||||||| | |||||||||| ||||| ||||| || |
Sbjct 1 ACCACATTTTCTCCAGAATCCTCCATTACTCTTCTTCTTCTCAACTTCTGAATC-TTGAC 59
Query 77 AAGC-TTCTTCGATTTTTCCAGAGGCAATCATGGTTAAAGGTCCAGGACTCTACACTGAA 135
|| | || ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 60 AA-CTTTGTTCGATTTTTCCAGAAGCAATCATGGTTAAAGGTCCAGGACTCTACACCGAA 118
Query 136 ATCGGCAAAAAGGCCAGAGATCTTCTGTACAGGGATTACCAAGGAGACCAGAAATTCAGT 195
||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 119 ATCGGCAAAAAAGCCAGAGATCTTCTGTACAAGGACTACCAAGGAGACCAGAAATTCAGT 178
Query 196 GTCACCACTTACTCTTCAACTGGTGTTGCGATCACTACAA-CGGGAACAAACAAAGGAAG 254
|| |||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||
Sbjct 179 GTTACCACTTACTCTTCCACCGGTGTTGCGATCACTACAACCGGG-ACAAACAAAGGAAG 237
Query 255 CT-TGTTTTTGGGTGATGTTGCTACCCAAGTGAAGAACAACAACTTCACTGCTGATGTCA 313
| |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 238 -TGTGTTTTTGGGAGATGTAGCTACCCAAGTGAAGAACAAGAACTTCACTGCTGATGTCA 296
Query 314 AAGTTTCCACTGATTCTTCTCTTTTGACCACTCTTACCTTTGATGAGCCTGCCCCTGGAC 373
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 297 AAGTTTCCACTGATTCTTCTCTGTTGACCACTCTTACCTTTGATGAGCCTGCCCCTGGAC 356
Query 374 TGAAAGTTATTGTTCAGGCTAAGTTGCCCGATCACAAATCTGGAAAGGCTGAGGTTCAGT 433
| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 357 TTAAAGTAATTGTTCAGGCTAAGTTGCCTGATCACAAATCTGGAAAGGCTGAGGTTCAGT 416
Query 434 ATTTCCATGACTATGCTGGTATCTCTACCAGCGTTGGATTCACAGCTACCCCGATTGTCA 493
|||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 417 ATTTCCATGACTATGCTGCTATCTCCACCAGCGTTGGATTCACAGCTAGCCCGATTGTCA 476
Query 494 ACTTCTCCGGTGTGGTTGGAACCAATGGTT-TGTCTCTTGGTACTGATGTGGCCTAT-AA 551
| ||||||||||||||||||||||||| || || ||||||||||||||||||||| | ||
Sbjct 477 ATTTCTCCGGTGTGGTTGGAACCAATG-TTCTGGCTCTTGGTACTGATGTGGCCT-TCAA 534
Query 552 CACCGAATCTGGCAACTTCAAACATTTCAATGCTGGTTTCAACTTCACCAAGGATGATTT 611
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 535 CACTGAATCTGGCAACTTCAAACATTTCAATGCTGGTTTGAACTTCACCAAGGATGATTT 594
Query 612 GACTGCTTCCCTCATTCTGAATGACAAAGGTGAGAAATTGAATGCATCCTACTACCAGAT 671
|| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 595 GATTGCTTCCCTCATTCTGAATGAAAAAGGTGAGAAACTGAACGCATCCTACTACCAGAT 654
Query 672 TGTGAGCCCGTCGAC------TGTGGTTGGAGCTGAGATTAGCCACAACTTCACGACCAA 725
||||| ||| | ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 655 TGTGAACCCATTGACCAACACTGTGGTTGGAGCTGAGATTAGCCACAACTTCACGACGAA 714
Query 726 AGAGAACGCCATCACTGTCGGAACTCAACACGCGCTTGACCCATTGACCACAGTGAAGGC 785
|||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 715 AGAGAATGCCATCACTGTCGGGACTCAACACGCAATTGACCCATTGACCACAGTGAAGGC 774
Query 786 AAGAGTGAACAATGCTGGTGTGGCTAACGCTCTGATCCAACATGAGTGGCGTCCAAAGTC 845
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 775 ACGAGTGAACAATGCTGGTGTGGCTAACGCACTGATCCAACATGAGTGGCGTCCAAAGTC 834
Query 846 GTTCTTCACCGTTTCTGGAGAGGTTGATTCTAAGGCGATCGATAAGAGTGCCAAGGTTGG 905
|||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||
Sbjct 835 GTTCTTCACCGTTTCTGGAGAGGTTGATTCTAGGGCGATCGAGAAGAGTGCTAAGGTTGG 894
Query 906 GATTGCTCTCGCTCTCAAGCCCTGAGAAGATACCACCAAATGGGCCCTGAAGTGGGTAGA 965
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 895 GATTGCTCTCGCTCTCAAGCCTTGAGAAGATACCACCAAATGGGCCCTGATGTGGGTAGA 954
Query 966 ATAGGTGTTATTTCTTTTTCGTCTTCAAATCTTTGGACAAATCGCTGTCTGGTTTGCTAA 1025
|||| | | ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 955 ATAG-T-T-ATTTCGTTTTCGTCTTCAAATCTTTGGACAAATCTCTGTCTGGTTTGCTAA 1011
Query 1026 ACAATCTTTCATTTGttttttttGTTCGGTGTTGGGATTT 1065
||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ACAATCTTTCATTTGTTTTTTTTGTTCGGTGTTGGGATTT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5