BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15100.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg325967 jgi|Araly1|325967|fgenesh1_pm.C_scaffold_6001187 1749 0.0 > Ahg325967 jgi|Araly1|325967|fgenesh1_pm.C_scaffold_6001187 Length=1116 Score = 1749 bits (947), Expect = 0.0 Identities = 1054/1106 (95%), Gaps = 6/1106 (1%) Strand=Plus/Plus Query 1 ATGATCTCCTGGCTCGATATCTACCATGTTGTTTCAGCAACTGTTCCTCTCTATGTCTCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATCTCCTGGCTCGATATCTACCATGTTGTTTCAGCAACTGTTCCTCTCTATGTCTCA 60 Query 61 ATGACATTAGGTTTCCTCTCTGCAAGACATCTAAAGCTCTTCTCACCCGAACAATGCGCA 120 ||||| ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| Sbjct 61 ATGACCTTAGGTTTCCTCTCTGCAAAACATATAAAGCTCTTCTCACCCGAGCAATGCGCA 120 Query 121 GGCATCAACAAATTCGTGGCCAAATTCTCCATCCCTTTGCTTTCTTTTCAAATAATCTCT 180 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GGCATCAACAAATTCGTCGCCAAATTCTCAATCCCTTTGCTTTCTTTTCAAATAATCTCT 180 Query 181 GAAAACAACCCCT-TCAAGATGAGCCCTAAACTCATTCTCTCTGATATTCTCCAGAAATT 239 |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| | Sbjct 181 CAAAACAACCCCTAT-AAGATGAGCCCTAAACTCATTCTCTCTGACATTCTCCAGAAAAT 239 Query 240 CTTAGTCGTTGTTGTATTAGCCATGGTTTTAAGATTCTGGCATCCAACAGGAGGAAGAGG 299 ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 240 CTTAGCCGTTGTTGTATTAGCCGCGGTTTTAAGATTCTGGCATCCACCAGGAGGAAGAGG 299 Query 300 AGGAAAATTGGGTTGGGTCATAACCGGATTATCTATATCGGTGTTGCCAAATACTCTCAT 359 |||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| Sbjct 300 AGGAAAATTGGGTTGGCTCATAACCGGTTTATCTATATCGGTGTTGCCAAACACTCTCAT 359 Query 360 TCTTGGAATGCCAATCTTGAGTGCCATCTATGGAGATGAAGCTGCGAGCATCTTGGAGCA 419 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TCTTGGAATCCCAATCTTGAGTGCCATCTATGGAGATGAAGCTGCGAGCATCTTGGAGCA 419 Query 420 GATTGTTGTCTTGCAAAGCTTGATTTGGTACACCATCTTGCTCTTTTTGTTCGAGCTTAA 479 ||||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||| Sbjct 420 GATTGTTGTGTTGCAAAGCTTGATTTGGTATAGCATCTTGCTCTTCTTGTTCGAGCTTAA 479 Query 480 CGCCGCAAGGGCGTTACCATCTTCTGGAGCTTCCCTAGAACATACAGGCAATGACCAGGA 539 ||||||||||||||||| || |||||| ||||| ||||| |||||||||||||||| || Sbjct 480 TGCCGCAAGGGCGTTACCTTCATCTGGACCTTCCTTAGAATATACAGGCAATGACCATGA 539 Query 540 AGAGGCTAATATAGAGGACGAGCCAAAAGAAGAAGAGGACGAAGAAGAAGTAGCAATAGT 599 |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| Sbjct 540 AGAGGCTAATATAGAGGAAGAGCCAAAAGAAGAA-A--ACGAAGAAGAAGTAGCAATAGT 596 Query 600 GAGAACAAGATCTGTTGGAACTATGAAGATTCTATTGAAGGCTTGGAGAAAGCTTATAAT 659 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 597 GAGAACAAGATCTATTGGAACTATGAAGATTTTATTGAAGGCTTGGAGAAAGCTTATAAT 656 Query 660 CAATCCAAATACATACGCAACATTGATCGGAATCATTTGGGCTACTTTACATTTCAGATT 719 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 CAATCCTAATACATACGCAACATTGATCGGAATCATTTGGGCTACTTTACATTTCAGATT 716 Query 720 GGGATGGAATTTGCCTGAGATGATTGATAAATCAATACATTTATTATCTGATGGAGGCTT 779 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 GGGATGGAATTTGCCAGAGATGATTGATAAATCAATACATTTATTATCTGATGGAGGCTT 776 Query 780 AGGAATGGCCATGTTCAGCTTAGGTCTGTTCATGGCATCACAAAGTAGTATCATAGCATG 839 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 777 AGGAATGGCCATGTTCAGCTTAGGTCTTTTCATGGCATCACAAAGTAGTATCATAGCATG 836 Query 840 TGGTACAAAAATGGCGATTATAACAATGCTGCTCAAGTTCGTATTAGGACCTGCTCTTAT 899 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 837 TGGAACAAAAATGGCGATTATAACAATGCTCCTCAAGTTCGTATTAGGACCTGCTCTTAT 896 Query 900 GATTGCTTCTGCGTATTGCATCAGATTAAAAAGTACTCTCTTCAAAGTAGCAATATTACA 959 ||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 897 GATTGCTTCCGCGTTTTGCATCAGATTAAGAAGTACTCTCTTCAAAGTCGCAATATTACA 956 Query 960 GGCAGCATTGCCTCAAGGAGTAGTGCCATTTGTTTTTGCAAAAGAGTATAATCTTCACCC 1019 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 957 GGCTGCATTGCCTCAAGGAGTAGTGCCATTTGTTTTTGCAAAAGAGTATAATCTTCATCC 1016 Query 1020 GGAGATCATTAGTACTGG-GGTGATATTTGGAATGCTAATTGCCTTACCAACAACTTTGG 1078 ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1017 GGAGATCATTAGTACCCCTGGTGATCTTTGGAATGCTAATTGCCTTACCAACAACTTTGG 1076 Query 1079 CATATTATTTTCTATTGGACCTATGA 1104 |||||||||||||||||||||||||| Sbjct 1077 CATATTATTTTCTATTGGACCTATGA 1102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5