BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15100.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325967 jgi|Araly1|325967|fgenesh1_pm.C_scaffold_6001187 1749 0.0
> Ahg325967 jgi|Araly1|325967|fgenesh1_pm.C_scaffold_6001187
Length=1116
Score = 1749 bits (947), Expect = 0.0
Identities = 1054/1106 (95%), Gaps = 6/1106 (1%)
Strand=Plus/Plus
Query 1 ATGATCTCCTGGCTCGATATCTACCATGTTGTTTCAGCAACTGTTCCTCTCTATGTCTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCTCCTGGCTCGATATCTACCATGTTGTTTCAGCAACTGTTCCTCTCTATGTCTCA 60
Query 61 ATGACATTAGGTTTCCTCTCTGCAAGACATCTAAAGCTCTTCTCACCCGAACAATGCGCA 120
||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct 61 ATGACCTTAGGTTTCCTCTCTGCAAAACATATAAAGCTCTTCTCACCCGAGCAATGCGCA 120
Query 121 GGCATCAACAAATTCGTGGCCAAATTCTCCATCCCTTTGCTTTCTTTTCAAATAATCTCT 180
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GGCATCAACAAATTCGTCGCCAAATTCTCAATCCCTTTGCTTTCTTTTCAAATAATCTCT 180
Query 181 GAAAACAACCCCT-TCAAGATGAGCCCTAAACTCATTCTCTCTGATATTCTCCAGAAATT 239
|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 181 CAAAACAACCCCTAT-AAGATGAGCCCTAAACTCATTCTCTCTGACATTCTCCAGAAAAT 239
Query 240 CTTAGTCGTTGTTGTATTAGCCATGGTTTTAAGATTCTGGCATCCAACAGGAGGAAGAGG 299
||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 240 CTTAGCCGTTGTTGTATTAGCCGCGGTTTTAAGATTCTGGCATCCACCAGGAGGAAGAGG 299
Query 300 AGGAAAATTGGGTTGGGTCATAACCGGATTATCTATATCGGTGTTGCCAAATACTCTCAT 359
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 300 AGGAAAATTGGGTTGGCTCATAACCGGTTTATCTATATCGGTGTTGCCAAACACTCTCAT 359
Query 360 TCTTGGAATGCCAATCTTGAGTGCCATCTATGGAGATGAAGCTGCGAGCATCTTGGAGCA 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTGGAATCCCAATCTTGAGTGCCATCTATGGAGATGAAGCTGCGAGCATCTTGGAGCA 419
Query 420 GATTGTTGTCTTGCAAAGCTTGATTTGGTACACCATCTTGCTCTTTTTGTTCGAGCTTAA 479
||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct 420 GATTGTTGTGTTGCAAAGCTTGATTTGGTATAGCATCTTGCTCTTCTTGTTCGAGCTTAA 479
Query 480 CGCCGCAAGGGCGTTACCATCTTCTGGAGCTTCCCTAGAACATACAGGCAATGACCAGGA 539
||||||||||||||||| || |||||| ||||| ||||| |||||||||||||||| ||
Sbjct 480 TGCCGCAAGGGCGTTACCTTCATCTGGACCTTCCTTAGAATATACAGGCAATGACCATGA 539
Query 540 AGAGGCTAATATAGAGGACGAGCCAAAAGAAGAAGAGGACGAAGAAGAAGTAGCAATAGT 599
|||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 540 AGAGGCTAATATAGAGGAAGAGCCAAAAGAAGAA-A--ACGAAGAAGAAGTAGCAATAGT 596
Query 600 GAGAACAAGATCTGTTGGAACTATGAAGATTCTATTGAAGGCTTGGAGAAAGCTTATAAT 659
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 597 GAGAACAAGATCTATTGGAACTATGAAGATTTTATTGAAGGCTTGGAGAAAGCTTATAAT 656
Query 660 CAATCCAAATACATACGCAACATTGATCGGAATCATTTGGGCTACTTTACATTTCAGATT 719
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAATCCTAATACATACGCAACATTGATCGGAATCATTTGGGCTACTTTACATTTCAGATT 716
Query 720 GGGATGGAATTTGCCTGAGATGATTGATAAATCAATACATTTATTATCTGATGGAGGCTT 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGGATGGAATTTGCCAGAGATGATTGATAAATCAATACATTTATTATCTGATGGAGGCTT 776
Query 780 AGGAATGGCCATGTTCAGCTTAGGTCTGTTCATGGCATCACAAAGTAGTATCATAGCATG 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 AGGAATGGCCATGTTCAGCTTAGGTCTTTTCATGGCATCACAAAGTAGTATCATAGCATG 836
Query 840 TGGTACAAAAATGGCGATTATAACAATGCTGCTCAAGTTCGTATTAGGACCTGCTCTTAT 899
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 TGGAACAAAAATGGCGATTATAACAATGCTCCTCAAGTTCGTATTAGGACCTGCTCTTAT 896
Query 900 GATTGCTTCTGCGTATTGCATCAGATTAAAAAGTACTCTCTTCAAAGTAGCAATATTACA 959
||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 897 GATTGCTTCCGCGTTTTGCATCAGATTAAGAAGTACTCTCTTCAAAGTCGCAATATTACA 956
Query 960 GGCAGCATTGCCTCAAGGAGTAGTGCCATTTGTTTTTGCAAAAGAGTATAATCTTCACCC 1019
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 957 GGCTGCATTGCCTCAAGGAGTAGTGCCATTTGTTTTTGCAAAAGAGTATAATCTTCATCC 1016
Query 1020 GGAGATCATTAGTACTGG-GGTGATATTTGGAATGCTAATTGCCTTACCAACAACTTTGG 1078
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1017 GGAGATCATTAGTACCCCTGGTGATCTTTGGAATGCTAATTGCCTTACCAACAACTTTGG 1076
Query 1079 CATATTATTTTCTATTGGACCTATGA 1104
||||||||||||||||||||||||||
Sbjct 1077 CATATTATTTTCTATTGGACCTATGA 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5