BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15110.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488352 jgi|Araly1|488352|fgenesh2_kg.6__1486__AT5G15110.1 2505 0.0
Ahg477401 jgi|Araly1|477401|fgenesh2_kg.3__102__AT3G01270.1 913 0.0
> Ahg488352 jgi|Araly1|488352|fgenesh2_kg.6__1486__AT5G15110.1
Length=1617
Score = 2505 bits (1356), Expect = 0.0
Identities = 1551/1641 (95%), Gaps = 30/1641 (2%)
Strand=Plus/Plus
Query 1 GCAGTACGATTCATCATCTTAAAGGCTTTAGGCTCTaaaag-aaaaaatagaaaaaaaaa 59
|||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||
Sbjct 1 GCAGTACGATTCATCATC-TAAAGGCTTTAGGCTCTTAAAGAAAAAAATAG---AAAAAA 56
Query 60 aGCGACCTAAAGCCATGTCGAAAGCTTAGTAAATTTCTCCATATAA-AATCTTAACCCCT 118
| ||||||||||||||||||| ||||||||||| | || | ||| || || |
Sbjct 57 A-CGACCTAAAGCCATGTCGAGAGCTTAGTAAA---C-CC-TTTAAGAA----AA---C- 102
Query 119 TAAGAAAACAAGGaaaaaaaaaGAAGAGATTGTTTAAATATTATATaaaa-aaactattt 177
||| || || |||||| ||||||||||||||||||||||| | |||| |||||| ||
Sbjct 103 -AAGGGAA-AA--AAAAAAGAAGAAGAGATTGTTTAAATATTAAAAAAAATAAACTA-TT 157
Query 178 ttctgagaaagaaa-ttttttgaaaaacaaaa-aaagaaaGATGGAGATGGTTAGGCTGT 235
|||||||||||||| |||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct 158 TTCTGAGAAAGAAATTTTTTTTAAAAATAAAAGAAAGAAAGATGGAGATGGCTAGGCTGT 217
Query 236 CAAAGTTGATGTTTACGTTTTGTATTGCCGTTCTAATTCCGACCATTCGAGGTAACATTT 295
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 218 CAAAGTTGATGTTTATGTTTTGTATTGCCGTTCTGATTCCGACCATTCGAGGTAACATTT 277
Query 296 CTGAGCTGGACGAGTATTGGTCGCAACGAGCCGACGAAGCCAGAGAATTCACTCTTCAAG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CTGAGCTGGACGAGTATTGGTCGCAACGAGCCGACGAAGCCAGAGAATTCACTCTTCAAG 337
Query 356 CTTACCATTCTGATCCTTACGAAATCGTCGATCACTTTCACGAGCGTCACTACGACAACT 415
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 338 CTTACCATTCTGATCCTTACGAAATCGTCGATCACTTTCATGAGCGTCACTACGACAACT 397
Query 416 CTACTGATGTTACAACG-CCTGAGGAAGATGGTGATGCGAAGCCCGAAGAGGAGGAAAAA 474
||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 398 CTACTGATGTTACAACGACC-GAGGAAGAGGGTGATGCGAAGCCTGAAGAGGAGGAAAAA 456
Query 475 GAGTTCATTGAAATGCTCGGAAGCTCGACGAACAGCACCAGACGAAGCCTAAGAGGTAAA 534
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 457 GAGTTCATTGAAATGCTCGGAAGCTCGACGAACAGCACCAGACGAAGCTTAAGAGGTAAA 516
Query 535 GGCAAGGGAAAATGGAGTAAGCTAAAGGGACCTTGTACCGCAAGTAACCCCATAGATAAA 594
|| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 517 GGTAAAGGCAAATGGAGTAAGCTAAAGGGACCTTGTACCGCAAGTAACCCGATAGATAAA 576
Query 595 TGTTGGCGTTGCCGATCGGATTGGGCTAAGCGTCGGAAGAAGCTTACACGTTGTGTCCGA 654
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 577 TGTTGGCGTTGCCGATCGGATTGGGCTAAGCGTCGGAAGAGGCTTACACGTTGTGTCCGA 636
Query 655 GGGTTTGGTCACAGGACGACCGGAGGAAAACGAGGACGCATCTATGTGGTTACAAGCAAC 714
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 637 GGGTTCGGTCACAGGACGACCGGAGGAAAACGAGGACGCATCTACGTGGTTACAAGCAAC 696
Query 715 CTCGACGAAGACATGGTGAACCCTAAACCGGGGACATTGCGTCATGCCGTGATTCAGAAG 774
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 697 CTCGACGACGACATGGTGAACCCTAAACCCGGGACATTGCGTCATGCCGTAATTCAGAAG 756
Query 775 GAACCTCTGTGGATCATTTTCAAGAACGATATGAGCATTCGGTTAAACCAAGAGCTTCTG 834
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 757 GAACCTCTCTGGATCATTTTCAAGAATGATATGAGCATTCGGTTAAACCAAGAGCTTCTC 816
Query 835 ATTAATAGCCACAAGACTATCGATGCACGAGGAGCTAATGTCCATGTAGCCCATGGCGCA 894
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 817 ATTAATAGCCACAAGACTATCGATGCACGAGGAGCCAATGTCCATGTAGCGCATGGTGCA 876
Query 895 GGGATCACAATGCAGTTTGTGAAAAATGTCGTCATCCATGGACTGCATATTCACCACATT 954
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 877 GGGATCACAATGCAGTTTGTGAAAAATGTCATCATCCATGGACTGCATATTCACCACATT 936
Query 955 TCTGAGAGTAGCGGTGGTATGATCCGAGACTCTGTAGACCATTTCGGAATGAGGACTAGA 1014
|| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 937 TCCGAGAGTAGCGGTGGTATGATCCGAGACTCGGTCGACCATTTTGGAATGAGGACTAGA 996
Query 1015 GCTGATGGAGATGGTCTATCGATTTATGGTTCGTCTAACATTTGGCTTGACCATATCTCG 1074
||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 997 GCTGATGGAGACGGTTTATCGATTTACGGTTCGTCTAACATTTGGCTTGACCATATTTCG 1056
Query 1075 ATGTCGAAATGTCAAGATGGACTCATCGATGCCATTGTTGGATCCACTGGCATTACAATC 1134
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1057 ATGTCTAAATGTCAAGATGGACTTATTGATGCCATTGTTGGATCCACTGGCATTACAATC 1116
Query 1135 TCCAACTCCCACTTCACTCACCACAACGATGTGATGTTGCTTGGTGCTCAAAACACGAAT 1194
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TCCAACTCTCACTTCACTCACCACAACGATGTGATGTTGCTTGGTGCTCAAAACACGAAT 1176
Query 1195 GAAGCGGACAAACATATGCAAGTCACAGTGGCTTATAACCATTTTGGTAAAGGACTTGTA 1254
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1177 GAAGCAGACAAGCATATGCAAGTCACAGTTGCTTATAACCATTTTGGTAAAGGACTTGTA 1236
Query 1255 CAGAGAATGCCTAGGATCCGATGGGGATTTGTTCATGTTGTGAACAACGACTACACTCAT 1314
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1237 CAGAGAATGCCAAGGATCCGATGGGGATTTGTTCATGTTGTGAACAATGACTACACTCAC 1296
Query 1315 TGGGAGCTTTACGCGATCGGAGGTAGTCAAGGTCCTACGATTCTCAGCCATGGAAACCGA 1374
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TGGGAGCTTTATGCGATCGGAGGTAGTCAAGGTCCTACGATTCTCAGCCATGGAAACCGA 1356
Query 1375 TTCATAGCTCCTCCACACAAACCGCATTACAGAGAGGTGACAAAGAGAGATTATGCTTCG 1434
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1357 TTCATAGCTCCTCCACACAAACCTCATTACAGAGAGGTGACAAAGAGAGATTATGCTTCG 1416
Query 1435 GAGGACGAGTGGAAACACTGGAACTGGAGATCTGATAAAGATGTATTCATGAACGGTGCT 1494
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1417 GAGGATGAGTGGAAACACTGGAACTGGAGATCTGAGAAAGATGTATTCATGAACGGAGCT 1476
Query 1495 TATTTCAGACAATCTGGTAATCCTCAATACAAATGTGCACACACAAGACAACAAATGATC 1554
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TATTTCAGACAATCTGGAAATCCTCAATACAAATGTGCACACACAAGACAACAAATGATC 1536
Query 1555 AAACCGAAAAATGGATTGGCTGTTTCAAAGCTGACCAAATATGCCGGAGCACTTGATTGC 1614
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 AAACCGAAACATGGATTGGCTGTTTCAAAGCTGACCAAATATGCCGGAGCACTTGATTGC 1596
Query 1615 AGAGTCGGGAGACGCTGTTAG 1635
|||||||||| ||||||||||
Sbjct 1597 AGAGTCGGGAAACGCTGTTAG 1617
> Ahg477401 jgi|Araly1|477401|fgenesh2_kg.3__102__AT3G01270.1
Length=1822
Score = 913 bits (494), Expect = 0.0
Identities = 1155/1463 (79%), Gaps = 90/1463 (6%)
Strand=Plus/Plus
Query 209 aaagaaaGATGGAGATGGTTAGGC-TGTCAAAGTTGA-TGTTTACGTTTTGTATTGCC-G 265
||| ||| ||||||| | ||||| | ||||| || | ||| | ||||||||||||| |
Sbjct 181 AAATAAA-ATGGAGACAGCTAGGCTTTTCAAA-TT-AGTGTGTGTGTTTTGTATTGCCAG 237
Query 266 TTCTAATTCCGACCATTCGAGGTAACATTTCTGAGCTG-GA-CGA-G--TATT-GGTCGC 319
|| | ||||||||||| |||| || || |||| || || ||| | |||| |||
Sbjct 238 TT-TGATTCCGACCATACGAGCCAATGTTGCTGA--TGAGACCGATGATTATTGGGT--A 292
Query 320 AACGA-GCCGACGAAGC-CAG-AGAA-TTCACTCTTCA-AGCTTACCATTCTGATCCTTA 374
||| | ||| | ||||| | | | || | || ||| | ||||||||| | || |||||
Sbjct 293 AACAAGGCCAATGAAGCTC-GTA-AACAT-ACCCTT-ATGGCTTACCATCCCGACCCTTA 348
Query 375 CGAAATCGTCGATCACTTTCACGAGCGTCACTACGACAACTCTACTGATGTTAC-A-ACG 432
|| |||||||| ||||| ||||||||||| ||||||||||| ||||||| | | | |
Sbjct 349 TGAGATCGTCGACCACTTCCACGAGCGTCATTACGACAACTCGACTGATG-T-CGAGGGG 406
Query 433 -CCTGAGGAAGATGGTGATGCGAAGCCCGAAGAGGAGGAAAAAGA-GTTCATTGAAATGC 490
|| |||||||| | | ||| | || |||||| |||| | ||||||| |||
Sbjct 407 ACC-GAGGAAGA--G-AAGGCG--G-TCGCTTCCGAGGAAGAAGACG-TCATTGAGATGA 458
Query 491 TCGGAAGCT-CGACGAACAGCACCAGACGAAGCCT-A-----A---G--A-GGTAAAGGC 537
| || | |||| |||||||| || || ||||| | | | | || |||||
Sbjct 459 TTTCTAG-TCCGACAAACAGCACAAGGCGGAGCCTAACCGGTAGGGGCAAGGGAAAAGGA 517
Query 538 AAGGGAAAATGGAGTAAGCTAAAGGGACCTTGTACCGCAAGTAACCCCATAGATAAATGT 597
|| ||||||||||| ||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 518 AAAGGAAAATGGAGCAAGCTAAAGGGACCTTGCACCGCAAGCAACCCGATTGATAAATGC 577
Query 598 TGGCGTTGCCGA-TCGGATTGGGCTAAGCGTCGGAAGAAGCT--TACACGTTGTGTCCGA 654
|||||||||| | | |||||||| | |||||| |||||||| | || |||||||||
Sbjct 578 TGGCGTTGCC-AGCCCGATTGGGCCAGGCGTCGCAAGAAGCTCGTTCA--TTGTGTCCGT 634
Query 655 GGGTTTGGTCACAGGACGACCGGAGGAAAACGAGGACGCATCTATGTGGTTACAAGCAAC 714
||||||||| ||||||| || ||||| ||||| || || || |||||||| || ||| |
Sbjct 635 GGGTTTGGTTACAGGACCACAGGAGGCAAACGCGGCCGTATATATGTGGTCACGAGC-CC 693
Query 715 C-TCGACGAAGACATGGTGAACCCTAAACCGGGGACATTGCGTCATGCCGTGATTCAGAA 773
| ||||| || ||||||||||||| ||| || ||| | ||||| || ||||| |||||
Sbjct 694 CAGAGACGATGATATGGTGAACCCTAGACCTGGAACACTACGTCACGCTGTGATCCAGAA 753
Query 774 GGAACCTCTGTGGATCATTTTCAAGAACGATATGAGCATTCGGTTAAACCAAGAGCTTCT 833
|||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| |
Sbjct 754 AGAACCTCTATGGATCATTTTTAAGCACGATATGAGCATTAGGTTAAACCAAGAGCTGAT 813
Query 834 GATTAATAGCCACAAGACTATCGATGCACGAGGAGCTAATGTCCATGTAGCCCATGGCGC 893
|||| ||| |||||||| |||||||| || || ||||| || || | || |||| ||
Sbjct 814 GATTGCTAGTCACAAGACAATCGATGCTCGTGGCGCTAACGTGCACATCGCATATGGTGC 873
Query 894 AGGGATCACAATGCAGTTTGTGAAAAATGTCGTCATCCATGGACTGCATATTCACCACAT 953
|| || || ||||||| |||| | ||| || |||||||||| || || || |||||||
Sbjct 874 CGGTATTACGATGCAGTATGTGCACAATATCATCATCCATGGGCTTCACATCCACCACA- 932
Query 954 TTC-TG-AGAGTAGCGGTGGTATGATCCGAGACTCTG-TAGACCA-TTTCGG-AATGAGG 1008
|| || | || || ||||||||||| |||| || | | ||||| ||| || || ||||
Sbjct 933 -TCGTGCAAAGCAGTGGTGGTATGATAAGAGATTC-GATTGACCACTTTGGGCAAAGAGG 990
Query 1009 ACTAGAGCTGATGGAGATGGTCTATCGAT-TTATGGTTCGTCTAACATTTGGCTTGACCA 1067
|| | ||||||||||||||| | || || || || | | |||||||||||||||||
Sbjct 991 AC--GGGCTGATGGAGATGGTATCTCTATCTT-CGGGGCAACAAACATTTGGCTTGACCA 1047
Query 1068 TATCTCGATGTCGAAATGTCAAGATGGACTCATCGATGCCATTGTTGGATCCACTGGC-A 1126
|| || ||||| ||||| |||||||| |||||||| || || | || ||||| || |
Sbjct 1048 CATTTCTATGTCTAAATGCCAAGATGGCCTCATCGACGCTATAATGGGTTCCAC-CGCAA 1106
Query 1127 TTACAATCTCCAACTCCCACTTCACTCACCACAACGATGTGATGTTGCTTGGTGCTCAAA 1186
| || ||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1107 TCACCATCTCTAACTCTCATTTCACCCACCACAACGATGTGATGTTGCTTGGTGCACAAG 1166
Query 1187 ACA-CGA-ATGAAGCGGACAA-ACATATGCAAGTCACAGTGGCTTATAACCATTTTGGTA 1243
||| | | ||| | | |||| | | |||||||||||||||||||| |||||||| ||||
Sbjct 1167 ACAACAACATGGAT-G-ACAAGA-AGATGCAAGTCACAGTGGCTTACAACCATTTCGGTA 1223
Query 1244 AAGGACTTGTACAGAGAATGCCTAGGATCCGATGGGGATTT-GTTCATGTTGTGAACAAC 1302
|||||||||| ||||| |||||||||||||||||||| ||| || || ||||| |||||
Sbjct 1224 AAGGACTTGTCCAGAGGATGCCTAGGATCCGATGGGG-TTTCGTCCACGTTGTCAACAAT 1282
Query 1303 GACTACACTCATTGGGAGCTTTACGCGATCGGAGGTAGTCAAGGTCCTACGATTCTCAGC 1362
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1283 GACTACACTCATTGGGAGCTTTACGCGATCGGTGGTAGCCAAGGTCCTACCATTCTCAGC 1342
Query 1363 CATGGAAACCGATTCATAGCTCCTCCACACAAACCGCATTACAGAGAGGTGACAAAGAGA 1422
||||||||||| ||||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct 1343 CATGGAAACCGTTTCATCGCTCCTCCTCACAAACAACACTACAGAGAGGTGACAAAGAGG 1402
Query 1423 GATTATGCTTCGGAG-GACGAGTGGAAACACTGGAACTGGAGATCTGATAAAGATGTATT 1481
||||||||||| || | || |||||| |||||||||||||||| || |||||||||||
Sbjct 1403 GATTATGCTTCAGAAAGT-GAATGGAAAAACTGGAACTGGAGATCCGAGAAAGATGTATT 1461
Query 1482 CATGAACGGTGCTTATTTCAGACAATCTGGTAATCCTCAATACAAATGTGCACACACAAG 1541
||||||| ||| ||||||||||||||||| |||||||| | ||| ||| | ||| | ||
Sbjct 1462 CATGAACAATGCATATTTCAGACAATCTGGAAATCCTCATTTCAAGTGTTCGCACTCTAG 1521
Query 1542 ACAACAAATGATCAAACCGAAAAATGGAT-TGGCTGTTTCAAAGCTGACCAAATATGCCG 1600
||||| ||||| || || ||| |||| | |||| ||||| ||||| |||||||| ||||
Sbjct 1522 GCAACAGATGATTAAGCCCAAACATGG-TGTGGCCGTTTCTAAGCTTACCAAATACGCCG 1580
Query 1601 GAGCACTTG-ATTGCAGAGTCGG 1622
||||| ||| ||||| | |||||
Sbjct 1581 GAGCA-TTGGATTGCCGGGTCGG 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5