BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15120.1
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488353 jgi|Araly1|488353|fgenesh2_kg.6__1487__AT5G15120.1 1517 0.0
> Ahg488353 jgi|Araly1|488353|fgenesh2_kg.6__1487__AT5G15120.1
Length=987
Score = 1517 bits (821), Expect = 0.0
Identities = 914/960 (95%), Gaps = 2/960 (0%)
Strand=Plus/Plus
Query 63 TTTGGTGAGACTTTTATGGGGTTTGAGATGAAACCAGAGAAAGAGGTTTTGGAATTGATT 122
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 29 TTTTGTGAGATTTTTATGGGGTTTGAGATGAAACCAGAGAAAGAGGTTATGGAATTGATT 88
Query 123 TCTAGTAAGAATCAATGCAAGTCTAATCCCAATTCTGTGAAGAAGAAGAACAAAAACAAG 182
|| |||||||| ||||| | ||||| |||||||||||| ||||||||||| || ||||||
Sbjct 89 TCGAGTAAGAACCAATGTATGTCTAGTCCCAATTCTGTCAAGAAGAAGAATAAGAACAAG 148
Query 183 AATAAGAAGATGATGATGACGTGGCGACGGAAGAAGATTGATTCCCCGGCGGATGGGATC 242
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 149 AATAAGAAGATGATGATGACGTGGAGACGGAAGAAGATTGATTCTCCGGCGGATGAGATC 208
Query 243 ACGGCGGTGCGGCGGTTGTTTAATACTTGCAAGGAAGTGTTCTCTAATGGTGGTCCTGGT 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 ACGGCGGTGCGGCGGTTGTTTAATACTTGCAAGGAAGTGTTCTCTAATGGTGGTCCTGGT 268
Query 303 GTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTGACGATATGAAACCA 362
||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 269 GTTGTTCCTTCTGAAGATAAAATTCAACAGCTACGAGACATTCTTGACGATATGAAACCA 328
Query 363 GAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCCGACCAAACTCCGGAGTCGAAGCT 422
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 329 GAGGATGTCGGTTTAGCTCCGACCATGCCGTATTTCCGACCAAACACCGGACTCGAAACT 388
Query 423 CGGTCTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCGATTGGG 482
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 389 CGGTCTTCGCCACCGATAACGTATCTGCATCTACACCAATGTGATCAATTCTCGATTGGG 448
Query 483 ATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCATCCAGGGATGACAGTT 542
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 449 ATTTTCTGTTTGCCGCCTTCTGGTGTTATTCCACTTCATAACCATCCAGGGATGACAGTT 508
Query 543 TTTAGTAAGCTTCTCTTTGGTACAATGCACATCAAGTCATATGATTGGGTGGTTGATGCT 602
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 509 TTTAGTAAGCTTCTCTTTGGTACAATGCACATCAAGTCGTATGATTGGGTGGTTGATACT 568
Query 603 CCAATGAGAGATTCAAAAACCAGGCTAGCGAAATTGAAGGTGGATTCAACATTCACCGCG 662
|||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 569 CCAATGAGAGATCCAAAAACCAGGCTAGCGAAACTGAAGGTGGACTCAACATTCACCGCG 628
Query 663 CCATGTAACGCCTCGATTTTGTACCCGGAAGATGGCGGGAACATGCATCGGTTCACAGCT 722
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CCGTGCAACGCCTCGATTTTGTACCCGGAAGATGGCGGGAACATGCATCGGTTCACAGCT 688
Query 723 ATAACAGCATGTGCGGTGCTAGACGTGCTAGGACCTCCTTACTGCAATCCAGAAGGCAGA 782
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 689 AAAACAGCATGTGCGGTGCTAGACGTGCTTGGACCTCCTTACTGCAATCCAGAAGGCAGA 748
Query 783 CATTGCACTTATTTCCTAGAATTCCCTTTAGACAAACTCTCATCAGAGGACGACGACGTT 842
||||||||||||||||||||||||||||| ||| || | ||||||||||||||||| ||
Sbjct 749 CATTGCACTTATTTCCTAGAATTCCCTTTTGACCAATTTTCATCAGAGGACGACGATATT 808
Query 843 TTGAGCAGTGAAGAGGAGAAGGAAGGTTATGCATGGCTGCAAGAAAGGGATGATAATCCA 902
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TTGAGAAGTGAAGAGGAGAAGGAAGGTTATGCATGGCTGCAAGAAAGGGATGATAATCCA 868
Query 903 GAAGATCATACTAACGTAGTTGGAGCGTTATACAGAGGCCCAAAGGTTGAAGATTGAGAG 962
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 869 GAAGATCATACTAACGTAGTTGGAGCATTATACAGAGGCCCAAAGGTTGAAGATTGAGAG 928
Query 963 cttctttttt-acccatttcgcttttcagatttcgaatcaactttcttcttctttttttc 1021
||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 929 CTTTTTTTTTTATCCATTTCGCTTTTCAGATTTCGAATCA-CTTTCTTCTTCTTTTTTTC 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44375075388
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5