BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15130.1 Length=1941 Score E Sequences producing significant alignments: (Bits) Value Ahg940996 jgi|Araly1|940996|scaffold_601540.1 2621 0.0 > Ahg940996 jgi|Araly1|940996|scaffold_601540.1 Length=1708 Score = 2621 bits (1419), Expect = 0.0 Identities = 1616/1708 (95%), Gaps = 26/1708 (2%) Strand=Plus/Plus Query 60 ATCTTCTGATATTTCTGACAATGGAGGTTCTTTTGAAATTACCCTCTTCAGAGTCTCCTC 119 |||||||||||||| | || |||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATCTTCTGATATTTATAACTATGGAGGTTCTTTTGAAATTACCCACTTCAGAGTCTCCTC 60 Query 120 TTAAGGATAA---ATTTGGATCTGTTCAAATCCATGAAGCTAATAAGGGTGATGGTGATC 176 |||||||||| ||||||||||||||| |||||||||||| ||||| |||||| |||| Sbjct 61 TTAAGGATAAGGTTTTTGGATCTGTTCAAGTCCATGAAGCTAGTAAGGATGATGGAGATC 120 Query 177 ATCAAGAACTTGAATCTGCCAAGGCAGAGATGAGCGAGGTGAAGGAAGAGAACGAGAAGC 236 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACCAAGAACTTGAATCTGCCAAGGCAGAGATGAGCGAGGTGAAGGAAGAGAACGAGAAGC 180 Query 237 TTAAAGGAATGCTCGAACGAATTGAAAGTGATTACAAATCTCTCAAGCTCAGATTCTTCG 296 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTAAAGGGATGCTGGAACGAATTGAAAGTGATTACAAATCTCTCAAGCTCAGATTCTTCG 240 Query 297 ACATAATTCAACAAGAACCTTCAAACACCGCAACTAAAAATCAAAACATGGTTGATCATC 356 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 ACATAATTCAACAAGAACCTTCAAACACCGCAACTAAAGATCAAAACATGGTTGATCATC 300 Query 357 CCAAGCCAACGACGACGGATTTGAGTTCTTTTGACCAAGAACGCGAGCTTGTATCGCTTT 416 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 301 CCAAGCCAACGACGACGGATTTGAGTTCTATTGACCAAGAACGCGAGCTTGTATCCCTTT 360 Query 417 CACTAGGGAGAAGAAGTTCTTCCCCAAGTG-ATAGCGTCCCCAAAAAG-GAAGAGAAAAC 474 |||||||||||||||||||||||||||||| || || |||| ||||| ||||||||||| Sbjct 361 CACTAGGGAGAAGAAGTTCTTCCCCAAGTGAAT-GC-ACCCCCAAAAGAGAAGAGAAAAC 418 Query 475 GGACGCAATCAGCGCAGAAGTCAACGCTGACGAAGAGTTGACTAAGGCCGGCTTGACCTT 534 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 419 GGACGCAATCAGCGCAGAAGTCAACGCTGACGAAGAGTTGACCAAGGCTGGCTTGACCTT 478 Query 535 AGGGATCAATAATGGCAACGGAGGTGAACCGAAAGAGGGTTTATCTATGGAGAATCGTG- 593 ||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||| Sbjct 479 AGGGATCAATAATGGCAACGGCCGTGAAACGGACGAGGGTTTATCTATGGAGAATCGTGC 538 Query 594 CAAAT-T---C-TGGCTCGGAAGAAGCT--TGG-G---C---G---CCAGGTAAAGTTAC 636 ||| | | | |||||||||||||||| ||| | | | |||||||||||||| Sbjct 539 CAATTCTAGCCATGGCTCGGAAGAAGCTCCTGGAGAAACTTGGCCACCAGGTAAAGTTAC 598 Query 637 GGGGAAGAGAAGCTCTCCAGCACCAGCCTCCGGTGGCGATGCTGACGGTGAGGCCGGTCA 696 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 599 GGGGAAGAGAAGCTCTCCAGCACCAGCCTCCGGTGGCGATGCTGATGGTGAGGCCGGTCA 658 Query 697 ACAAAACCATGTTAAGAGAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACACCAACGAT 756 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 ACAAAACCATGTTAAGAGAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACGCCAACGAT 718 Query 757 GAATGATGGTTGTCAATGGAGAAAATATGGACAAAAGATTGCGAAAGGAAATCCATGTCC 816 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GAATGATGGTTGCCAATGGAGAAAATATGGACAAAAGATTGCGAAAGGAAATCCATGTCC 778 Query 817 ACGAGCATATTATCGCTGCACGGTTGCACCTGGATGTCCCGTTAGAAAACAGGTCCAAAG 876 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ACGGGCATATTATCGCTGCACGGTTGCACCTGGATGTCCCGTTAGAAAACAGGTCCAAAG 838 Query 877 ATGTGCAGATGACATGTCTATACTAATCACAACCTATGAAGGAACACACAGCCACTCTCT 936 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 839 ATGTGCAGATGACATGTCTATACTAATCACAACCTATGAAGGAACACACAGCCATTCTCT 898 Query 937 TCCACTCTCAGCCACCACCATGGCTTCCACCACATCAGCCGCTGCCTCCATGCTCCTCTC 996 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 899 TCCACTCTCAGCCACCACCATGGCCTCCACCACCTCAGCCGCTGCCTCCATGCTCCTCTC 958 Query 997 TGGCTCCTCCTCCTCACCAGCCGCTGAAATGATCGGAAATAACCTCTACGACAATTCAAG 1056 ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 959 GGGCTCTTCCTCCTCATCAGCCGCCGAAATGATCGGAAATAACCTCTACGACAATTCAAG 1018 Query 1057 ATTCAACAACAACAACAAATCCTTCTATTCACCCACCCTTCACTCCCCATTACATCCCAC 1116 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1019 ATTCAACAACAACAACAAATCCTTCTACTCACCCACGCTTCACTCCCCATTACATCCCAC 1078 Query 1117 CGTCACTCTAGACCTCACTGCTCCACAACACTCTTCCTCGTCTTCTTCTTCATTGCTTTC 1176 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1079 CGTCACTCTAGACCTCACCGCTCCACAACACTCTTCATCGTCTTCTTCTTCATTGCCTTC 1138 Query 1177 TTTAAATTTCAACAAATTCTCGAACTCTTTCCAAAGATTCCCATCTACAAGCCTAAATTT 1236 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1139 TTTAAATTTCAACAAATTCTCAAACTCTTTCCAAAGATTCCCATCCACAAGCCTAAATTT 1198 Query 1237 CTCTTCTACTTCATCAACATCATCAAACCCGTCTACTCTCAACCTACCCGCGATTTGGGG 1296 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1199 CTCTTCTACTTCATCAACATCATCAAACTCGTCTACTCTCAACCTACCCGCGATTTGGGG 1258 Query 1297 TAATGGGTATTCTTCTTATACTCCATATCCTTACAACAACGTCCAATTTGGGACGTCCAA 1356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TAATGGGTATTCTTCTTATACTCCATATCCTTACAACAACGTCCAATTTGGGACGTCCAA 1318 Query 1357 CCTAGGAAAAACAGTCCAAAATAGCCAGTCCTTAACCGAAACCCTAACAAAAGCGCTTAC 1416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 CCTAGGAAAAACAGTCCAAAATAGCCAGTCCTTAACCGAAACCCTAACAAAAGCGCTTAC 1378 Query 1417 TTCCGACCCAAGTTTCCACTCGGTGATCGCTGCTGCCATCTCAACTATGGTCGGATCAAA 1476 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || Sbjct 1379 TTCCGACCCAAGTTTTCACTCGGTGATCGCTGCTGCGATCTCAACTATGGTCGGATCCAA 1438 Query 1477 TGGAGAACAACAGATTGTCGGTCCACGGCATTCGATTAGCAATAACATTCAACAAACCAA 1536 || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1439 CGGGGAACAACAGATCGTCGGTCCACGGCATTCGATTAGCAATAACATTCAGCAAACCAC 1498 Query 1537 CACGACGAATAATAACAAAGGATGTGGAGGCTATTTTAGCAGCTTATTGATGTCTAACAT 1596 | |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1499 CGCGACAAATAATAACAAAGGTTGTGGAGGCTATTTTAGCAGCTTATTGATGTCTAACAT 1558 Query 1597 TATGGCGAGTAATCAAACGGGTGCTTCTTTGGATCAACCATCGTCGCAACTTCCTCCCTT 1656 ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| Sbjct 1559 AATGGCGAGTAATCAAACGGGTGCGGCTATGGATCAACCATCGTCGCAACTTCCTCACTT 1618 Query 1657 CTCTATGTTCAAGAATTCTTCTTCTTCGTCTTCTACGACTAATTTCGTGAACAAGGAAGA 1716 |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 1619 CTCTATGTTCAAGAATTCTTCTTCTTCGTCATCCACGACTAATTTCGTGAACAACGAAGA 1678 Query 1717 GAAAAGCTAGTCA-TTGTTCTTGttttt 1743 ||||||||||| | || ||||||| ||| Sbjct 1679 GAAAAGCTAGTAAATTCTTCTTGTCTTT 1706 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72942819175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5