BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15130.1
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940996 jgi|Araly1|940996|scaffold_601540.1 2621 0.0
> Ahg940996 jgi|Araly1|940996|scaffold_601540.1
Length=1708
Score = 2621 bits (1419), Expect = 0.0
Identities = 1616/1708 (95%), Gaps = 26/1708 (2%)
Strand=Plus/Plus
Query 60 ATCTTCTGATATTTCTGACAATGGAGGTTCTTTTGAAATTACCCTCTTCAGAGTCTCCTC 119
|||||||||||||| | || |||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATCTTCTGATATTTATAACTATGGAGGTTCTTTTGAAATTACCCACTTCAGAGTCTCCTC 60
Query 120 TTAAGGATAA---ATTTGGATCTGTTCAAATCCATGAAGCTAATAAGGGTGATGGTGATC 176
|||||||||| ||||||||||||||| |||||||||||| ||||| |||||| ||||
Sbjct 61 TTAAGGATAAGGTTTTTGGATCTGTTCAAGTCCATGAAGCTAGTAAGGATGATGGAGATC 120
Query 177 ATCAAGAACTTGAATCTGCCAAGGCAGAGATGAGCGAGGTGAAGGAAGAGAACGAGAAGC 236
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAAGAACTTGAATCTGCCAAGGCAGAGATGAGCGAGGTGAAGGAAGAGAACGAGAAGC 180
Query 237 TTAAAGGAATGCTCGAACGAATTGAAAGTGATTACAAATCTCTCAAGCTCAGATTCTTCG 296
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTAAAGGGATGCTGGAACGAATTGAAAGTGATTACAAATCTCTCAAGCTCAGATTCTTCG 240
Query 297 ACATAATTCAACAAGAACCTTCAAACACCGCAACTAAAAATCAAAACATGGTTGATCATC 356
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACATAATTCAACAAGAACCTTCAAACACCGCAACTAAAGATCAAAACATGGTTGATCATC 300
Query 357 CCAAGCCAACGACGACGGATTTGAGTTCTTTTGACCAAGAACGCGAGCTTGTATCGCTTT 416
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 301 CCAAGCCAACGACGACGGATTTGAGTTCTATTGACCAAGAACGCGAGCTTGTATCCCTTT 360
Query 417 CACTAGGGAGAAGAAGTTCTTCCCCAAGTG-ATAGCGTCCCCAAAAAG-GAAGAGAAAAC 474
|||||||||||||||||||||||||||||| || || |||| ||||| |||||||||||
Sbjct 361 CACTAGGGAGAAGAAGTTCTTCCCCAAGTGAAT-GC-ACCCCCAAAAGAGAAGAGAAAAC 418
Query 475 GGACGCAATCAGCGCAGAAGTCAACGCTGACGAAGAGTTGACTAAGGCCGGCTTGACCTT 534
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 419 GGACGCAATCAGCGCAGAAGTCAACGCTGACGAAGAGTTGACCAAGGCTGGCTTGACCTT 478
Query 535 AGGGATCAATAATGGCAACGGAGGTGAACCGAAAGAGGGTTTATCTATGGAGAATCGTG- 593
||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||
Sbjct 479 AGGGATCAATAATGGCAACGGCCGTGAAACGGACGAGGGTTTATCTATGGAGAATCGTGC 538
Query 594 CAAAT-T---C-TGGCTCGGAAGAAGCT--TGG-G---C---G---CCAGGTAAAGTTAC 636
||| | | | |||||||||||||||| ||| | | | ||||||||||||||
Sbjct 539 CAATTCTAGCCATGGCTCGGAAGAAGCTCCTGGAGAAACTTGGCCACCAGGTAAAGTTAC 598
Query 637 GGGGAAGAGAAGCTCTCCAGCACCAGCCTCCGGTGGCGATGCTGACGGTGAGGCCGGTCA 696
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 GGGGAAGAGAAGCTCTCCAGCACCAGCCTCCGGTGGCGATGCTGATGGTGAGGCCGGTCA 658
Query 697 ACAAAACCATGTTAAGAGAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACACCAACGAT 756
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 ACAAAACCATGTTAAGAGAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACGCCAACGAT 718
Query 757 GAATGATGGTTGTCAATGGAGAAAATATGGACAAAAGATTGCGAAAGGAAATCCATGTCC 816
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAATGATGGTTGCCAATGGAGAAAATATGGACAAAAGATTGCGAAAGGAAATCCATGTCC 778
Query 817 ACGAGCATATTATCGCTGCACGGTTGCACCTGGATGTCCCGTTAGAAAACAGGTCCAAAG 876
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACGGGCATATTATCGCTGCACGGTTGCACCTGGATGTCCCGTTAGAAAACAGGTCCAAAG 838
Query 877 ATGTGCAGATGACATGTCTATACTAATCACAACCTATGAAGGAACACACAGCCACTCTCT 936
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 ATGTGCAGATGACATGTCTATACTAATCACAACCTATGAAGGAACACACAGCCATTCTCT 898
Query 937 TCCACTCTCAGCCACCACCATGGCTTCCACCACATCAGCCGCTGCCTCCATGCTCCTCTC 996
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 899 TCCACTCTCAGCCACCACCATGGCCTCCACCACCTCAGCCGCTGCCTCCATGCTCCTCTC 958
Query 997 TGGCTCCTCCTCCTCACCAGCCGCTGAAATGATCGGAAATAACCTCTACGACAATTCAAG 1056
||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 GGGCTCTTCCTCCTCATCAGCCGCCGAAATGATCGGAAATAACCTCTACGACAATTCAAG 1018
Query 1057 ATTCAACAACAACAACAAATCCTTCTATTCACCCACCCTTCACTCCCCATTACATCCCAC 1116
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1019 ATTCAACAACAACAACAAATCCTTCTACTCACCCACGCTTCACTCCCCATTACATCCCAC 1078
Query 1117 CGTCACTCTAGACCTCACTGCTCCACAACACTCTTCCTCGTCTTCTTCTTCATTGCTTTC 1176
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1079 CGTCACTCTAGACCTCACCGCTCCACAACACTCTTCATCGTCTTCTTCTTCATTGCCTTC 1138
Query 1177 TTTAAATTTCAACAAATTCTCGAACTCTTTCCAAAGATTCCCATCTACAAGCCTAAATTT 1236
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1139 TTTAAATTTCAACAAATTCTCAAACTCTTTCCAAAGATTCCCATCCACAAGCCTAAATTT 1198
Query 1237 CTCTTCTACTTCATCAACATCATCAAACCCGTCTACTCTCAACCTACCCGCGATTTGGGG 1296
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1199 CTCTTCTACTTCATCAACATCATCAAACTCGTCTACTCTCAACCTACCCGCGATTTGGGG 1258
Query 1297 TAATGGGTATTCTTCTTATACTCCATATCCTTACAACAACGTCCAATTTGGGACGTCCAA 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TAATGGGTATTCTTCTTATACTCCATATCCTTACAACAACGTCCAATTTGGGACGTCCAA 1318
Query 1357 CCTAGGAAAAACAGTCCAAAATAGCCAGTCCTTAACCGAAACCCTAACAAAAGCGCTTAC 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CCTAGGAAAAACAGTCCAAAATAGCCAGTCCTTAACCGAAACCCTAACAAAAGCGCTTAC 1378
Query 1417 TTCCGACCCAAGTTTCCACTCGGTGATCGCTGCTGCCATCTCAACTATGGTCGGATCAAA 1476
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1379 TTCCGACCCAAGTTTTCACTCGGTGATCGCTGCTGCGATCTCAACTATGGTCGGATCCAA 1438
Query 1477 TGGAGAACAACAGATTGTCGGTCCACGGCATTCGATTAGCAATAACATTCAACAAACCAA 1536
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1439 CGGGGAACAACAGATCGTCGGTCCACGGCATTCGATTAGCAATAACATTCAGCAAACCAC 1498
Query 1537 CACGACGAATAATAACAAAGGATGTGGAGGCTATTTTAGCAGCTTATTGATGTCTAACAT 1596
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CGCGACAAATAATAACAAAGGTTGTGGAGGCTATTTTAGCAGCTTATTGATGTCTAACAT 1558
Query 1597 TATGGCGAGTAATCAAACGGGTGCTTCTTTGGATCAACCATCGTCGCAACTTCCTCCCTT 1656
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 1559 AATGGCGAGTAATCAAACGGGTGCGGCTATGGATCAACCATCGTCGCAACTTCCTCACTT 1618
Query 1657 CTCTATGTTCAAGAATTCTTCTTCTTCGTCTTCTACGACTAATTTCGTGAACAAGGAAGA 1716
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1619 CTCTATGTTCAAGAATTCTTCTTCTTCGTCATCCACGACTAATTTCGTGAACAACGAAGA 1678
Query 1717 GAAAAGCTAGTCA-TTGTTCTTGttttt 1743
||||||||||| | || ||||||| |||
Sbjct 1679 GAAAAGCTAGTAAATTCTTCTTGTCTTT 1706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72942819175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5