BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15150.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325972 jgi|Araly1|325972|fgenesh1_pm.C_scaffold_6001192 1574 0.0
Ahg927652 jgi|Araly1|927652|scaffold_300109.1 414 8e-115
> Ahg325972 jgi|Araly1|325972|fgenesh1_pm.C_scaffold_6001192
Length=951
Score = 1574 bits (852), Expect = 0.0
Identities = 920/952 (97%), Gaps = 8/952 (1%)
Strand=Plus/Plus
Query 284 ATGTATATGTATGAGGAGGAAAGGAACAATATCAATAATAATCAAGAAGGACTGAGATTG 343
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGTATATGTATGAGGAGGAAAGGAACAATATTAATAATAATCAAGAAGGATTGAGATTG 60
Query 344 GAGATGGCCTTTCCTCAACATGGCTTCATGTTTCAGCAACTCCATGAAGACAATGCTCAT 403
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGATGGCCTTTCCACAACATGGCTTCATGTTTCAGCAACTCCATGAAGACAATGCTCAT 120
Query 404 CACTTACCTTCCCCAACCTCTCTCCCCTCTTGTCCTCCTCATCTCTTCTAT---GGAGGA 460
|||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 121 CACTTACCTTCCCCTACCTCTCTCCCTTCTTGTCCTCCTCACCTCTTCTATGGAGGAGGA 180
Query 461 GGAGGAAACTACATGATGAACAGATCAATGTCGTTCACGGGAGTATCAG---ATCATCAT 517
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GGAGGAAACTACATGATGAACAGATCAATGTCGTTCACGGGAGTATCAGATCATCATCAT 240
Query 518 CATCTAACTCAAAAAAGCCCGACAACAACGAACAACATGAATGATCAAGACCAGGTAGGC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CATCTAACTCAAAAAAGCCCGACAACAACGAACAACATGAATGATCAAGACCAGGTAGGC 300
Query 578 GAGGAAGACAACCTATCAGACGATGGGTCACATATGATGTTAGGAGAGAAGAAGAAGAGG 637
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGAAGACAATCTATCAGATGATGGGTCACATATGATGTTAGGAGAGAAGAAGAAGAGG 360
Query 638 CTGAATTTAGAGCAAGTTAGGGCATTAGAGAAGAGCTTCGAGCTAGGGAACAAGCTGGAG 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGAATTTAGAGCAAGTTAGGGCATTAGAGAAGAGCTTCGAGCTAGGGAACAAGCTGGAG 420
Query 698 CCAGAGAGGAAGATGCAGCTTGCTAAGGCTTTAGGATTGCAGCCTAGGCAGATTGCAATA 757
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 CCAGAGAGGAAGATGCAGCTTGCTAAGGCTTTAGGGTTGCAGCCTAGGCAGATTGCGATA 480
Query 758 TGGTTTCAGAACAGGAGAGCTAGGTGGAAGACAAAGCAGCTCGAGAGAGACTATGATTCT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGTTTCAGAACAGGAGAGCTAGGTGGAAGACAAAGCAGCTCGAGAGAGACTATGATTCT 540
Query 818 CTCAAAAAACAGTTCGATGTTTTGAAATCGGACAATGATTCTCTTCTTGCCCACAACAAG 877
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 CTCAAGAAACAGTTCGATGTTTTGAAATCAGACAATGATTCTCTTCTTGCCCACAACAAG 600
Query 878 AAACTACATGCTGAGTTAGTGGCATTGAAGAAACACGACCGTAAAGAATCAGCAAAGATC 937
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 AAACTACATGCTGAGTTAGTGGCATTGAAAAAACACGACCGTAAAGAATCAGCAAAGATC 660
Query 938 AAGAGAGAATTCGCAGAAGCTTCATGGAGCAACAATGGAAGCACAGAAAATAATCATAAC 997
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 AAGAGAGAATTGGCAGAAGCTTCATGGAGCAACAATGGGAGCACAGAAAATAATCATAAC 720
Query 998 AATAATAGTTCAGACGCTAATCATGTGAGCATGATCAAAGATCTTTT-CCCTTCTTCGAT 1056
|||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 721 AATAATAGTTCAGACGTTAATCATGTGAGCATGATCAAAGATCTTTTTCCCT-CTTCAAT 779
Query 1057 CCGATCCGCGACCGCGACCACGACCTCTACCCATATTGATCATCAGATTGTTCAAGATCA 1116
|| |||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 780 CCCATCCGCAACCACGACCACGACCTCGACCAATATTGATCATCAGATTGTTCAAGAACA 839
Query 1117 AGATCAAGGGTTTTGCAATATGTTCAATGGTATTGATGAAACGACGTCGGCTAGTTATTG 1176
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGATCCAGGGTTTTGCAATATGTTCAATGGTATTGATGAAACGACGTCGGCTAGTTATTG 899
Query 1177 GGCATGGCCTGACCAGCAGCAACAACATCACAATCATCATCAGTTCAATTGA 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGCATGGCCTGACCAGCAGCAACAACATCACAATCATCATCAGTTCAATTGA 951
> Ahg927652 jgi|Araly1|927652|scaffold_300109.1
Length=893
Score = 414 bits (224), Expect = 8e-115
Identities = 500/625 (80%), Gaps = 51/625 (8%)
Strand=Plus/Plus
Query 590 CTATCAGACGATGGGTCACATA-TGATG-TTAGGAGAGAAGAAGAAGAGGCTG-AATTTA 646
||||||||||||||| |||||| | ||| || || |||||||||||||||||| || |||
Sbjct 244 CTATCAGACGATGGGGCACATACT-ATGCTT-GGGGAGAAGAAGAAGAGGCTGCAA-TTA 300
Query 647 GAGCAAGTTAGGGCATTAGAGAAGAGCTTCGAGCTAGGGAACAAGCTGGAGCCAGAGAGG 706
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GAGCAAGTTAAGGCATTAGAGAAGAGCTTCGAGCTTGGGAACAAGCTGGAGCCAGAGAGG 360
Query 707 AAGATGCAGCTTGCTAAGGCTTTAGG-ATTGCAGCCTAGGCAGATTGCAATATGGTTTCA 765
||||| || || ||||| || ||||| || ||| || || |||||||| || ||||||||
Sbjct 361 AAGATACAACTAGCTAAAGCATTAGGGAT-GCAACCGAGACAGATTGCGATTTGGTTTCA 419
Query 766 GAACAGGAGAGCTAGGTGGAAGACAA-AGCAGCTCGAGAGAGACTATGATTCTCTCAAAA 824
||||||||||||||||||||||| | | |||||||||||||| |||||||| ||||| |
Sbjct 420 AAACAGGAGAGCTAGGTGGAAGACTAGA-CAGCTCGAGAGAGATTATGATTCACTCAAGA 478
Query 825 AACAGTTCGATGT-T-TTGAAATCGGACAATGATTCTCTTCTTGCCCACAACAAGAAACT 882
||||||| || || | || ||||| |||||||||||||| |||||| |||||||||||||
Sbjct 479 AACAGTTTGA-GTCTCTT-AAATCCGACAATGATTCTCTACTTGCCTACAACAAGAAACT 536
Query 883 ACATGCTGAGTTAGTGGCATTGAAGAA-ACACGACCGTAAAGAATCAG-CAAAGATCAAG 940
| ||||||| || |||| || ||||| | | || |||| ||| | || || |||
Sbjct 537 CCTTGCTGAGGTAATGGCTTTAAAGAACAAA-GAATGTAATGAAGGAAACATT-ATAAAG 594
Query 941 AGAGAATTCGCAGAAGCTTCATGGAGCAACAATGGAAGCACAGAAAATAAT-CATA-A-C 997
|||||| ||||||||||||||||||||||||||||||||||| |||| | || | | |
Sbjct 595 AGAGAA---GCAGAAGCTTCATGGAGCAACAATGGAAGCACAGAGAATAGTTCAGACATC 651
Query 998 AATA-ATAGTT-C--AGAC-G-C---TA-ATCA--TGTGAGCATGATCAAAGATCTTTTC 1045
||| | || | | ||| | | || | || ||||| || ||||||||| ||||||
Sbjct 652 AATCTAGAGATGCCTAGAGAGACCACTACAACACATGTGAACACGATCAAAGACCTTTTC 711
Query 1046 CCTTCTTCGATCCGATCCGCGACCGCGACCACGACCTCTACCCATATTGATCATCAGATT 1105
||||| ||||| ||||| | || || | || | | | | | | ||||| | ||
Sbjct 712 CCTTCATCGATTCGATCATCT---GC-AC-ATGA--TG-ATC-AGAATCATCATGAAATA 762
Query 1106 GTTCAAGATCAAGATCAAGGGTTTTGCAATATGTTCAATGGTATTGATGAAACGACGTCG 1165
|||||||| | || ||| ||| | || ||||| ||||| |||||||||||||| |||
Sbjct 763 GTTCAAGA--A-GA--AAGCCTTT-GTAACATGTTTAATGGCATTGATGAAACGACCTCG 816
Query 1166 GCTAGTTATTGGGCATGGCCTGACC 1190
||| |||| ||||||||| ||||||
Sbjct 817 GCTGGTTACTGGGCATGGTCTGACC 841
Score = 93.5 bits (50), Expect = 4e-18
Identities = 128/162 (79%), Gaps = 20/162 (12%)
Strand=Plus/Plus
Query 332 GGACTGAGATTGGAGATGGCCTTTCCTCAACATGGCTTCATGTTTCAGCAACTCCATGAA 391
||| ||||||| |||||||| |||||||||||||| || ||||| || ||||| ||||||
Sbjct 52 GGATTGAGATTAGAGATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAA 111
Query 392 GACAATGCTCA-TCACTTACCTTCCCCAACCTCTCTCCCCTCTTGTCCTCCTCATCTCTT 450
||||| || ||| | | ||| || || ||||||||||||||||||||
Sbjct 112 GACAA----CAGTCA---A-GAT---CAA-----CTACCTTCTTGTCCTCCTCATCTCTT 155
Query 451 CTATGGAGGAGGAGGAAACTACATGATGAACAGATCAATGTC 492
| ||||||||||| || |||||||||||||||||| |||||
Sbjct 156 CAATGGAGGAGGA--AA-CTACATGATGAACAGATCTATGTC 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5