BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15160.1

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940999 jgi|Araly1|940999|scaffold_601543.1                        545    1e-154


> Ahg940999 jgi|Araly1|940999|scaffold_601543.1
Length=326

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 320/331 (97%), Gaps = 5/331 (2%)
 Strand=Plus/Plus

Query  74   AGAATATTTTTTCAAATCAAACATGTCTTCTAGCAGAAGGTCGAGACAAGCAAGCTCATC  133
            |||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  1    AGAATA-TTTTTCAAGTCAAA-ATGTCGTCTAGCAGAAGGTCGAGACAAGCAAGCTCATC  58

Query  134  ATCAAGAATTAGCGATGACCAGATCACTGATCTCATCTCAAAGCTCCGACAGTCCATTCC  193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   ATCAAGAATTAGCGATGACCAGATCACTGATCTCATCTCAAAGCTCCGACAGTCCATTCC  118

Query  194  GGAGATTCGCCAGAACCGTCGTTCCAACACGGTATCAGCGTCGAAAGTGTTACAAGAGAC  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  GGAGATTCGCCAGAACCGTCGTTCCAACACGGTATCAGCGTCGAAAGTGTTACAAGAGAC  178

Query  254  TTGCAACTACATAAGAAACTTGAACAAGGAAGCCGATGACCTCAGTGATCGATTGACTCA  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  TTGCAACTACATAAGAAACTTGAACAAGGAAGCCGATGACCTCAGTGATCGATTGACTCA  238

Query  314  GCTTCTGGAATCCATTGATCCTAATAGCCCACAAGCCGCAGTTATTAGGAGCTTGATTAA  373
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  239  GCTTCTGGAATCCATTGATCCTAATAGCCCACAAGCCGCCGTTATTAGGAGCTTGATTAA  298

Query  374  TGGATAATTAAGATATAAATTGATTAGTTGT  404
            |||||||| |   ||||| || |||||||||
Sbjct  299  TGGATAAT-AT--TATAAGTTTATTAGTTGT  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22015774853


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5