BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15170.1
Length=2219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488358 jgi|Araly1|488358|fgenesh2_kg.6__1492__AT5G15170.1 2929 0.0
> Ahg488358 jgi|Araly1|488358|fgenesh2_kg.6__1492__AT5G15170.1
Length=2200
Score = 2929 bits (1586), Expect = 0.0
Identities = 1919/2072 (93%), Gaps = 53/2072 (3%)
Strand=Plus/Plus
Query 7 TGATGATGATGCGGTTGTCTGATTGTCGCCGCCGGCGTGGAG-A-----ACCGTTACCGT 60
||||| |||||||| || ||||||||||||||||||||||| | ||||||| |||
Sbjct 1 TGATGCTGATGCGGCGGTGTGATTGTCGCCGCCGGCGTGGAGAATCGTTACCGTTATCGT 60
Query 61 TACTATGAATTTCTTGCCC------A-TTA-TTCTCCATTGAAACATC--C-CAAAATTT 109
|||||||| ||| |||||| | ||| ||||||||||||||||| | | ||| ||
Sbjct 61 TACTATGAGTTTGTTGCCCATTATTACTTACTTCTCCATTGAAACATCATCGC-AAA-TT 118
Query 110 TCGCTAGTTAG-T-TCACTGAAACGCAGCGTTTTGCATCTTCTTCTTCTTC--CTT-GGT 164
|| || || | | || || | || ||||||||| ||||||||| |||| ||| |
Sbjct 119 TC-TTA-TTTGATCCCATTG--A-GC-GCGTTTTGCTTCTTCTTCTCCTTCTTCTTCACT 172
Query 165 TCAATTCAACCTCAGACACTTGTCTTCCTTAATGGCTCACTCTCAGGTTGCTTATTTGAT 224
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 173 TCACTTCAACCTCAGACACTTGTCTTCCTTAATGGCTCACTCTCAGGTTGCGTATTTGAT 232
Query 225 TCCATTGAAAGCAGATTTAAAGGAAGACAATTCATCTCCAAGGATAACTTTATCCGAAGG 284
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCCATTGAAAGCTGATTTAAAGGAAGACAATTCATCTCCAAGGATAACTTTATCCGAAGG 292
Query 285 TCCAAACATCATTGGCCGTGGCAACGTTTCAATCGTCGATAAGCGTCTCAGTCGCAAACA 344
||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 293 TCCAAACTTCATCGGCCGCGGCAACGTTTCAACCGTCGATAAGCGTCTCAGTCGCAAACA 352
Query 345 CATCACCATTATCGTTTCCACTTCTGGCTCAGCTTCGTTGTCAGTGGACGGAACAAATCC 404
|||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 353 CATCACCATTATCGCTTCCACGTCTGGCTCAGCTTCGTTGTCAGTGGAAGGAACGAATCC 412
Query 405 GGTTGTTATTAGGTCTTCCGGTGACGGAGAGAGAAAGAAAGTGAAACCTAGTGAAGAGGT 464
|||||||||||||||||| |||| ||| ||||| |||||||||||||| ||||||||||
Sbjct 413 GGTTGTTATTAGGTCTTCTGGTGGCGGCGAGAGGAAGAAAGTGAAACCCCGTGAAGAGGT 472
Query 465 TTCAGTATGTAATGATGATCTTATTGAATTGATCCCTGGTCACCATTTCTTCAAGCTAGT 524
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 473 TTCAGTAAGTAATGATGATCTTATTGAATTGATCCCTGGTCATCATTTCTTCAAGCTAGT 532
Query 525 TTTG-----C--T-----C------A---ATGGAAGAGCTGCTAAGAAAGCTCGAAAGGC 563
|||| | | | | ||| |||||||||||||||||||||||||||
Sbjct 533 TTTGTTACCCGTTGAAAACAAAGGAAGCCATGAAAGAGCTGCTAAGAAAGCTCGAAAGGC 592
Query 564 TGAAGACGATGTAGAGGCCATTCGTCGTTTTTGTCCACCTAATGAGAAACTACCTTCAAC 623
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGAAGATGATGTAGAGGCGATTCGTCGTTTTTGTCCACCTAATGAGAAACTACCTTCAAC 652
Query 624 ATTTCGGCTTTTGAGTGTTGATGCATTGCCTGATTGGGCTAATACTTCTTGTGTTTCCAT 683
||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 653 GTTTCGGCTTTTGAATGTTAATGGATTGCCTGATTGGGCTAATACCTCTTGTGTTTCCAT 712
Query 684 TAATGATGTCATTGAGGGAGACGTTGTTGCTGCGATCTTATCGAATTATATGGTTGATAT 743
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |
Sbjct 713 TAATGATGTCATTGAGGGAGACGTTGTTGCTGCAATCCTATCGAATTATATGGTCGATGT 772
Query 744 AGACTGGTTGATGTCAGCTTG-CCCAAAACTGGCCAACATTCCCCAGGTTATGGTTATTC 802
||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct 773 AGACTGGTTAATGTCAGCTTGTCCC-AAACTGGCCAACATTCCCCAGGTTATGGTCATTC 831
Query 803 ATGGAGAAGGTGATGGTAGGCAAGAGTATATTCAGAGGAAGAAGCCAGCTAATTGGATTC 862
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 832 ATGGAGAAGGTGATGGTAGGCAAGAGTATATTCAGAGGAAGAAGCCAGTTAATTGGATTC 891
Query 863 TTCATAAGCCTCGGTTACCTATTTCATTCGGGACACACCATTCGAAGGCTATATTTCTTG 922
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TTCATAAGCCCCGGTTACCTATTTCATTCGGGACACACCATTCGAAGGCTATATTTCTTG 951
Query 923 TCTATCCTCGAGGGGTGAGAGTTGTAGTACACACCGCGAATCTGATCCATGTTGATTGGA 982
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 952 TCTATCCACGAGGAGTGAGAGTTGTAGTACACACTGCGAATCTGATCCATGTTGATTGGA 1011
Query 983 ATAACAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCTTGGAAAGATGATGACAAAGATC 1042
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ACAACAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCTTGGAAAGATGATGACAAAGATC 1071
Query 1043 CACCTAAAGGTTGTGGATTCGAAGGTGATCTCATTGATTACCTCAATGTTCTTAAGTGGC 1102
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 1072 CACCTAAAGGTTGTGGATTCGAAGGTGATCTTATCGATTACCTCACTGTTCTTAAGTGGC 1131
Query 1103 CTGAGTTTACTGCAAACTTACCTGGCCGTGGTAATGTCAAGATCAATGCAGCCTTCTTCA 1162
||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1132 CTGAGTTCAGTGCAAACTTGCCTGGCCGTGGTAATGTCAAAATCAATGCAGCCTTCTTCA 1191
Query 1163 AAAAGTTTGATTATTCTGATGCTACGGTTCGACTAATTGCTTCAGTCCCTGGATACCACA 1222
|||||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||
Sbjct 1192 AAAAGTTTGATTATTCTGATGCTAAGGTTAGACTAATTGCATCGGTCCCTGGATACCACA 1251
Query 1223 CTGGTTTTAACTTGAACAAATGGGGACACATGAAGCTACGGACTATTCTTCAAGAATGCA 1282
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CTGGTTTGAACTTGAAAAAATGGGGACACATGAAGCTACGGACTATTCTTCAAGAATGCA 1311
Query 1283 TTTTCGATAGAGAGTTCCGCAGATCCCCGCTAATCTATCAGTTTTCTTCACTTGGTTCTT 1342
| ||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||
Sbjct 1312 TATTCGATAGAGAGTTCTGCAGATCCCCGTTAGTTTATCAGTTTTCTTCACTTGGTTCTT 1371
Query 1343 TAGACGAGAAGTGGTTGGCTGAGTTTGGAAATTCTTTGTCTTCTGGTATAACAGAGGACA 1402
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1372 TAGACGAGAAATGGTTGGCTGAATTTGGAAATTCTTTGTCTTCTGGTATAACAGAGGACA 1431
Query 1403 AAACTCCTCTCGGTCCCGGGGATTCGTTGATAATATGGCCTACAGTAGAAGACGTCAGAT 1462
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1432 AAACTCCTCTCGGTCCCGGGGATCCGTTGATAATATGGCCTACAGTAGAAGACGTCAGAT 1491
Query 1463 GTTCTTTAGAGGGTTATGCTGCTGGCAATGCAATTCCGAGCCCATTGAAGAACGTGGAGA 1522
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1492 GTTCTTTAGAGGGTTATGCTGCTGGCAATGCAATTCCGAGCCCTTTGAAGAACGTGGAGA 1551
Query 1523 AACCATTCTTGAAAAAGTATTGGGCTAGATGGAAAGCGGATCATAGCGCTCGCGGTCGTG 1582
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1552 AACCATTCTTGAAAAAGTATTGGGCTAGATGGAAAGCGGATCATAGTGCTCGTGGTCGTG 1611
Query 1583 CCATGCCACATATAAAGACGTTCACACGTTACAACGACCAGAAGATTGCATGGTTCTTAC 1642
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct 1612 CCATGCCACATATAAAGACATTCACACGTTACAACAACCAGAAGCTTGCATGGTTCTTAC 1671
Query 1643 TAACCTCATCGAATCTTAGCAAAGCGGCCTGGGGAGCACTTCAGAAGAACAATTCACAGT 1702
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1672 TAACCTCATCGAATCTTAGCAAAGCGGCCTGGGGAGCACTTCAGAAAAACAATTCCCAGT 1731
Query 1703 TGATGATTCGTTCCTACGAGTTGGGCGTCTTGTTTTTACCATCTCCAATAAAAACACAGG 1762
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1732 TGATGATCCGTTCCTACGAGTTGGGTGTCTTGTTTTTACCATCTCCAATAAAAACACAAG 1791
Query 1763 GTTGTGTATTTTCGTGCACTGAGAGCAACCCGAGTGTTATGAAGGCAAAACAAGAGACGA 1822
||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1792 GTTGTATATTTTCATGCACTGAGAGCAACCCGAGTACTATGAAGGCAAAACAAGAGAGGA 1851
Query 1823 AAGACGAGGTAGAGAAGAGGAGTAAGCTAGTGACAATGACCTGGCAAGGAGACCGAGATT 1882
||||||| | |||||||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 1852 AAGACGAAGCAGAGAAGAGGGGTAAGCTAGTGACCATGACCTGGCAAGGAGACAGAGATT 1911
Query 1883 TGCCTGAGATAATCTCATTACCAGTTCCTTATCAACTACCTCCTAAGCCATACTCACCCG 1942
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1912 CGCCTGAGATAATCTCATTACCAATTCCTTATGAACTACCTCCTAAGCCATACTCAGCCG 1971
Query 1943 AAGATGTTCCATGGTCATGGGACCGAGGCTACTCGAAGAAAGATGTGTATGGACAAGTCT 2002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 AAGATGTTCCATGGTCATGGGACCGAGGCTACTCGAAGAAAGATGTGTATGGACAAGTCT 2031
Query 2003 GGCCAAGATAGTTGATGATAGCTTTAGTAGCT 2034
||||||||||||||||||||||||||||||||
Sbjct 2032 GGCCAAGATAGTTGATGATAGCTTTAGTAGCT 2063
Score = 147 bits (79), Expect = 5e-34
Identities = 96/104 (92%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 2116 CTAAGCGATGAACAACCAGACGGATAAACAAAAATTAGTGTGAAA-CTGATTGAAGTCTG 2174
|||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 2097 CTAAGCGAACAACAACCAGACGGATAAACAAAAATTAGTGTGAAAACAGATTGAAATCTG 2156
Query 2175 TGGATTAATCCGGATTAGTCCACCAATGGATAGGATTAGTATTG 2218
|||||||||||||| ||||||| |||| ||||||||||||||||
Sbjct 2157 TGGATTAATCCGGAGTAGTCCAACAATTGATAGGATTAGTATTG 2200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83531907285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5