BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15180.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325975 jgi|Araly1|325975|fgenesh1_pm.C_scaffold_6001195 1480 0.0
> Ahg325975 jgi|Araly1|325975|fgenesh1_pm.C_scaffold_6001195
Length=990
Score = 1480 bits (801), Expect = 0.0
Identities = 929/992 (94%), Gaps = 4/992 (0%)
Strand=Plus/Plus
Query 43 ATGGCTGCTTTGAAGATGACTATCTCTTGTTTCTTGTTT-CTTCAAGTAATATATTGCTT 101
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1 ATGACTGCTTTGAAGATGACTATCTCTTGTTTCTT-TTTCCTTCAAGTAATATCGTGCTT 59
Query 102 GCTCTCTTCATTTGCTCCAACAAATGTGCAAGGATTGAAAGTTGGATTCTACGACAAGGC 161
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 60 GCTCTCTTCATTTGCCCCAACAAATGTGCAAGGATTGCAAGTTGGGTTCTACGACAAGGC 119
Query 162 ATGCCCCAAAGCCGAGCTTATTGTCAAAAAGTCTGTCTTCGAGGCTGTGAAGAATGATCG 221
|||||| ||||| |||||||||||||| ||||||||||||||||| | || || ||||
Sbjct 120 ATGCCCGAAAGCTGAGCTTATTGTCAAGAAGTCTGTCTTCGAGGCAATTAACAAGGATCC 179
Query 222 GACAATTGCAGCTCCTTTGCTCAGGATGTTCTTCCACGATTGCTTCGTTAGGGGATGCGA 281
||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 180 AACACTTGGAGCTCCTTTGCTCAGAATGTTCTTCCACGATTGCTTCGTTCGGGGATGCGA 239
Query 282 AGGGTCGGTATTGCTAGAGCTAAAGAACAAAAAAGATGAGAAAAACTCAATTCCTAACCT 341
||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 AGGCTCGCTCTTGCTAGAGCTAAAGAACAAAAAAGATGAGAAAAACGCAATTCCTAACCT 299
Query 342 CACCCTTCGAGGATTTGAGATCATAGACAATGTCAAGGCAGCTCTAGAAAAGGAGTGTCC 401
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 CACCCTTCGAGGATTTGAGATCATAGACAATGCCAAGGCAGCTCTAGAAAAGGAGTGTCC 359
Query 402 GGGCATTGTTTCTTGCTCTGATGTATTGGCTCTTGTCGCTAGAGACGCAATGGTTGCGCT 461
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 360 GGGCATTGTTTCTTGCTCTGATGTATTGGCTCTTGTCGCTAGAGATGCAATGCTTGCACT 419
Query 462 CAATGGACCGTCGTGGGAGGTTGAAACGGGACGAAGAGACGGTCTGGTTACAAACATCAC 521
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 CAATGGACCGTCGTGGGAGGTTGAAACGGGAAGAAGAGACGGTCTGGTTACAAACATCAC 479
Query 522 TGAGGCCTTATTAAACTTACCATCACCATTTAATAATATCAGTAGCCTTATCACTCAATT 581
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGAGGTCTTATTAAACTTACCATCACCATTTAATAATATCAGTAGCCTTATCACTCAATT 539
Query 582 CCAGTCCAAAGGCCTCGACAAGAAAGACCTCGTTGTGCTTTCAGGTGGGCACACAATTGG 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCAGTCCAAAGGCCTCGACAAGAAAGACCTCGTTGTGCTTTCAGGTGGGCACACAATTGG 599
Query 642 GAATGGACATTGTCCACAGATCACAAACCGTCTCTACAACTTCACCGGAAAAGGAGATAG 701
| | ||||||||||| || ||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 600 GCACGGACATTGTCCTCAAATCACGAACCGGCTCTACAATTTCACCGGCAAAGGAGATAG 659
Query 702 TGACCCGAACTTAGACACGGAATACGCAGTCAAACTCAGAGGAAAATGCAAGCCAACTGA 761
||| ||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||
Sbjct 660 TGATCCGAACTTAGACACGAAATACGCAGCCAACCTCAGAAGAAAATGCAAGCCAACTGA 719
Query 762 TACCACAACGGCTCTAGAAATGGATCCAGGAAGCTTTAAAACGTTCGATGAAAGTTACTT 821
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 720 TACCACGACGGCTCTAGAAATGGATCCAGGAAGCTTCAAAACGTTTGATGAAAGCTACTT 779
Query 822 CAAGCTTGTGTCTCAAAGAAGAGGATTGTTTCAATCTGATGCAGCTCTTTTAGACAATCA 881
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 780 CAAGCTTGTGTCTCAAAGAAGAGGGTTGTTTCAATCTGACGCAGCTCTTTTAGACAATCA 839
Query 882 AGAAACTAAGTCTTATGTTCTCAAG-AGTTTGAATAGTGATGGGTCTACTTTCTTTAAAG 940
|||||||||||||||| |||| ||| | | |||||||||| |||||||||||||||||
Sbjct 840 AGAAACTAAGTCTTATCTTCTAAAGCACAT-GAATAGTGATAAGTCTACTTTCTTTAAAG 898
Query 941 ACTTTGGTGTCTCCATGGTAAAAATGGGTCGGATTGGAGTTTTAACGGGTCAGGTTGGGG 1000
| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 899 ATTTTGGTGTCTCTATGGTAAAGATGGGTCGGATTGGAGTTTTAACGGGTCAGGCTGGGG 958
Query 1001 AAGTTCGCAAGAAGTGCAGAATGGTTAATTAA 1032
||||||||||||||||||||||||||||||||
Sbjct 959 AAGTTCGCAAGAAGTGCAGAATGGTTAATTAA 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5