BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15190.1
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488361 jgi|Araly1|488361|fgenesh2_kg.6__1495__AT5G15190.1 619 7e-177
> Ahg488361 jgi|Araly1|488361|fgenesh2_kg.6__1495__AT5G15190.1
Length=689
Score = 619 bits (335), Expect = 7e-177
Identities = 553/650 (85%), Gaps = 48/650 (7%)
Strand=Plus/Plus
Query 1 GTCTTTCACACTGGACAATAACTTTTCAAATTTCGAAATTCGAATTTTTGTTACTCACAA 60
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GTCTTTCACAGTTCACAATAACTTTTCAAATTTCGAAATTCGAATTTTTGTTCCTCACAA 60
Query 61 ATCTCTCTTTATATAAACGATGATGACGA-T-G-GGTGGA--A-GAGAAGCTGAATCGTG 114
|||||||| |||||||||||||||||||| | | || ||| | ||||||||||||||||
Sbjct 61 ATCTCTCTCTATATAAACGATGATGACGATTGGAGGAGGAGGAGGAGAAGCTGAATCGTG 120
Query 115 GCCGGAGATGGAAGCGATAGCTAGGAAGATGGTTGAGGAAGTTGAAACAGAGAGTAGCGG 174
||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||
Sbjct 121 GCCGGAGATGGAAGCCATAGCTAGGAAGATGGTGGAAGAGGTTGAAACAGAGAGTAGCGG 180
Query 175 ATCATCGGAAGCTGAGACAGAGTCTCCGAGATCCGTCGGACGTTGGATCACGGCTAAAGA 234
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 181 ATCATCGGAAGCTGAGACGGAGTCTCCGAGATCCGTCGGACGTTGGATCACAGCTAAGGA 240
Query 235 GAAAGTACATAACCAGGTATTGAAGATTAGGGAAGAGGATCTCTGTGTTCTTGTTGAAGA 294
||| |||| |||||| |||||||||| |||||||||||| |||||||| || |||||
Sbjct 241 CCGAGTTCATAGCCAGGTTTTGAAGATTATGGAAGAGGATCTATGTGTTCTCGTCGAAGA 300
Query 295 CAAAG-TGACGAATCCAGAGGATCGACGATATCTTCGTCCACGTCGTTTTAATCTGTTCC 353
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 TAAAGCTG-CGAATCCAGAGGATCGACGATATCTTCGTCCACGTCGTCTTAATCTGTTTT 359
Query 354 TGATCTCGCGTCAGAATTTGCCTTGTTCGCCACTTAGTGGAAAAGGGAGATCCGTT---- 409
|||||||||| | |||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct 360 TGATCTCGCGGCCGAATCTGCCTTGTTCGCCTCTTAGTGGAAAAGTGAGATCCGTTCGTT 419
Query 410 AACGTTGTTCAGACTCAGTGATGATGAT--TCA--C--A--GATCCAAAATCGATCAAGG 461
|||| |||||||| |||||||||||||| | | | | |||| ||| ||||||||||
Sbjct 420 AACGCTGTTCAGAGTCAGTGATGATGATGATGATTCCCATAGATCTAAA-TCGATCAAGG 478
Query 462 TTTGTTTCTCGATGTATATATCGATCCAACAAATTACAC--TAAACTTATATGAATT-TG 518
|| || |||||||| | |||||||||||||||||| ||| ||| | ||| || |
Sbjct 479 TTCGTCTCTCGATGGAC----CGATCCAACAAATTACACACTAAGCTT-T-TGATTTCT- 531
Query 519 ATCTCATTTACACTAGTTTGTGCAGGTGATATGTCTTCTTTCAATTTCTCTgtttttttt 578
|||||| |||||||| ||| ||||||||||||||| ||| | | || |||||||||
Sbjct 532 ATCTCAATTACACTATTTTTTGCAGGTGATATGTC--CTT-C--T--CT--GTTTTTTTT 582
Query 579 -tggttgctttgaacttttttttattgttgtttcgtttcgttttgttttt 627
|| || || ||||||||||| |||||||||||| |||| |||||
Sbjct 583 CTGCTT--TT-GAACTTTTTTT----GTTGTTTCGTTTTTTTTTTTTTTT 625
Score = 102 bits (55), Expect = 3e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 660 tttttttgttttttATGGTGATAAAAGTCATGTGTATATAAACCGTGAATCTGTATATAT 719
||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 626 TTTTTTTTTTTTTTCTGGTGATAAATGTCATGTGTATATAAACCGTGAATCTGTATATAT 685
Query 720 GAGC 723
||||
Sbjct 686 GAGC 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26800410651
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5