BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15200.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488362 jgi|Araly1|488362|fgenesh2_kg.6__1496__AT5G15200.1 1341 0.0
> Ahg488362 jgi|Araly1|488362|fgenesh2_kg.6__1496__AT5G15200.1
Length=810
Score = 1341 bits (726), Expect = 0.0
Identities = 784/812 (97%), Gaps = 4/812 (0%)
Strand=Plus/Plus
Query 1 CATTCGTCTCTTTCGTTCCTCTCTGCGTGCCCTAGTTA-TTCAGATCGCCGAATTTGCAG 59
|||||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 1 CATTCGTCTCCTTCGTTCCTCTCTGCGTGCCCTAG-TATTTCAGATCGCCGATTTTGCAG 59
Query 60 TAAGGAGACGAAAATATGGTGCACGTTTGCTACTACCGCAACTATGGAAAGACCTTCAAG 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAAGGAGACGAAGATATGGTGCACGTTTGCTACTACCGCAACTATGGAAAGACCTTCAAG 119
Query 120 GGACCACGTCGTCCTTACGAGAAGGAGCGTCTTGATTCTGAATTGAAGCTGGTTGGTGAG 179
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 120 GGACCACGTCGTCCTTACGAGAAGGAGCGTCTTGACTCTGAATTGAAGCTTGTTGGTGAG 179
Query 180 TATGGTCTGCGTAACAAGCGTGAGCTCTGGAGAGTGCAGTACTCTCTTAGCCGTATCCGT 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TATGGTCTGCGTAACAAGCGTGAGCTCTGGAGAGTGCAGTATTCTCTTAGCCGTATCCGT 239
Query 240 AATGCTGCTAGAGATCTTTTGACTCTTGATGAGAAGAGTCCAAGAAGGATCTTTGAAGGT 299
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 240 AATGCTGCAAGGGATCTTTTGACTCTCGATGAGAAGAGTCCAAGAAGGATCTTTGAGGGT 299
Query 300 GAGGCT-TTGCTCCGTAGGATGAACCGTTACGGGCTTCTTGATGAGAGCCAGAACAAGCT 358
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGGCTCTT-CTCCGTAGGATGAACCGTTACGGGCTTCTTGATGAGAGCCAGAACAAGCT 358
Query 359 CGATTACGTCTTGGCTTTGACTGTTGAGAACTTTCTTGAGCGTCGTCTTCAGACTATTGT 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 CGATTACGTCTTGGCTTTGACTGTTGAGAACTTTCTTGAACGTCGTCTTCAGACTATTGT 418
Query 419 GTTCAAGTCTGGTATGGCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTCAAGTCTGGTATGGCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCA 478
Query 479 TATCAGGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTCACA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATCAGGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTCACA 538
Query 539 GAAGCACATTGACTTTGCCCTCACCAGTCCCTTCGGTGGTGGCCGTCCAGGAAGAGTGAA 598
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAAGCACATTGACTTTGCTCTGACCAGTCCCTTCGGTGGTGGCCGTCCAGGAAGAGTGAA 598
Query 599 GAGAAGGAACGAGAAGTCTGCCTCCAAGAAAGCCTCAGGTGGCGGTGATGCAGACGGTGA 658
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 599 GAGAAGGAACGAGAAGTCTGCCTCCAAGAAAGCCTCTGGTGGTGGTGATGCAGACGGTGA 658
Query 659 TGACGAAGAGTAAATCTGAAGTCGCACCGTTTTAGCTATGAATCAATCTGCTTTTTGATA 718
||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||||
Sbjct 659 TGACGAAGAGTAAATCTAAAGTCCCATCGTTTTAGCTATGAAGCAATCTGCTTTTTGATA 718
Query 719 TTTTGTAGTAAGCAACTTTGTTGTTCGTTTTCAGAGGATTGTTTTATGGTTTCTTTCTTT 778
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 TTTTGTAGTATGCGACTTTGTTGTTCGTTTTCAGAGGATTGTTTTATGGTTTCTTTATTT 778
Query 779 TACTCTCGAGATTGCTAAACCTTTGGGTTATC 810
||| |||||||||||| |||||||||||||||
Sbjct 779 TACCCTCGAGATTGCTGAACCTTTGGGTTATC 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5