BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15210.1
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488363 jgi|Araly1|488363|fgenesh2_kg.6__1497__AT5G15210.1 1596 0.0
> Ahg488363 jgi|Araly1|488363|fgenesh2_kg.6__1497__AT5G15210.1
Length=1216
Score = 1596 bits (864), Expect = 0.0
Identities = 1103/1210 (91%), Gaps = 49/1210 (4%)
Strand=Plus/Plus
Query 1 CTTCTCATCTCTTTCTTCCTCCATGAGAGACTTGAGT-A-AATAAT--ACATAGTTTT-A 55
||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||| |
Sbjct 1 CTTCTCATCTCTTTCTTCCTCCATGAGAGACTTGAGTAATAATAATACACATA-TTTTAA 59
Query 56 AATTTCCCCTTTTCTAATC-T-TATCTCTCCCAAATACATAAACCCATCCCAAAGATTTC 113
|||||| |||| ||||||| | ||||| ||||||||||||||||| ||||| | |
Sbjct 60 AATTTCTCCTTCTCTAATCTTATATCTGTCCCAAATACATAAACCTATCCC--A-A---- 112
Query 114 GAGTTTACAATTTAAAAACAGTTTTGTTTAGTGCAATCTTTACCTTATCTTTACTT--C- 170
|| |||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 113 -AG------ATTTAAAAACAGTTTTGTTTAGTGCAATCTTTACCTTATC-TTCCTTCACT 164
Query 171 TATCATCTATTCTTCTTCTTCCTCCATCTCTAGAAAATTATAATACTTCTTGTTTCTTAA 230
| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 165 TCTCATCTATTCTTCTTCTTCCTCCATCTCTAGAAAATCATAATACTTTTTGTTTCTTAA 224
Query 231 ATCTTATTTGTATTACAATAACCAAAACCCAAGTTTACAAAACATTTCTTCTTCTTGTTT 290
|||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 225 ATCTTATTTGTATTCCAATAACCAAAACCCAAGTTTACAAAACA--------T-TTGTTT 275
Query 291 TTCGAAACCCTAAATGTTTTGAGTTGTCAT-G--G---ATGTAATAGCTACTACAACTAC 344
|| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 276 TT-GAAACCCTAAATGTTTTGAGTTGTCATGGATGTAAATGTAATAGCTACTACAACTAC 334
Query 345 TATAGTATCCGACTTGGATTCACGACAACCCGAAATCGAAGCTCCGATCCGGATCCAGCC 404
||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||
Sbjct 335 TATAGTATCCGACTTGGATTCACGACAGCCCGAAACCGAAGCTCCGACCCGGATCCAGCC 394
Query 405 CGCGAAGCCTATTTCTTTCTCAAACGGCAAACGCTGCCACCACCATCATCTTGCATCTGA 464
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 395 CGCGAAGCCTATTTCTTTCTCCAACGGCAAACGCTGCCACCACCATCATCTTGCGTCTGA 454
Query 465 AGCGGTTGCGGTTGCGACTTATAAAGAATGTCTAAAGAATCACGCAGCAGGTATCGGCGG 524
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 455 AGCGGTTGCGGTTGCGACTTATAAAGAATGTCTAAAGAATCATGCCGCAGGAATAGGCGG 514
Query 525 TCACGCTTTAGACGGATGCGGCGAGTTTATGCCGTCACCGTCGTTTAACTCCAATGACCC 584
||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||
Sbjct 515 TCACGCTTTAGACGGATGCGGCGAGTTTATGCCGTGTCCGTCGTTTAACACCAACGAACC 574
Query 585 CGCTTCACTAACGTGCGCTGCTTGTGGTTGCCACCGTAACTTCCACCGCCGTGAGGAGGA 644
| | ||| |||||||||| || || ||||||||||||||||||||||||||||| || ||
Sbjct 575 CACGTCATTAACGTGCGCCGCCTGCGGTTGCCACCGTAACTTCCACCGCCGTGAAGAAGA 634
Query 645 TCCATCTTCTCTCTCTGCCATCGTCCCTGCGATCGAATTTCGACCTCACAACCGTCACCA 704
|||||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 635 TCCATCTTCTCTTTCTGCCGTCGTCCCGGCGATCGAATTTCGTCCTCACAACCGTCACCA 694
Query 705 GCTTCCTCCACCGCCTCCTCCTCAT-CTGGCGGGGATTCGTAGTCCAGACGACGATGATT 763
|||||||| || |||||||||||| | || ||||||||||||||||||||| |||||||
Sbjct 695 ACTTCCTCCGCCTCCTCCTCCTCATGC-GGTGGGGATTCGTAGTCCAGACGATGATGATT 753
Query 764 CAGCTTCTCCACCGCCGATCTCGTCTTCTTACATGCTTCTCGCACTCTCTGGAGGAAGAG 823
|||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 754 CAGCTTCTCCGCCGCCGATCTCGTCTTCTTACATGCTTCTTGCACTCTCCGGAGGAGGAG 813
Query 824 GAGGAGCTAACACGGCGGTTCCAATGTCTAGGAAACGTTTTAGGACGAAGTTTAGTCAGT 883
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 814 GAGGAGCTAACACGGCGGTTCCGATGTCTAGGAAACGTTTTAGGACGAAGTTTAGTCAGT 873
Query 884 ATCAGAAGGAGAAGATGTTCGAGTTCTCGGAGAGAGTTGGGTGGAGGATGCCGAAAGCTG 943
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATCAGAAGGAAAAGATGTTTGAGTTCTCGGAGAGAGTTGGGTGGAGGATGCCGAAAGCTG 933
Query 944 ATGACGTGG-TGGTTAAGGAGTTTTGTCGGGAGATTGGAGTTGATAAAAGCGTTTTCAAA 1002
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 ATGACGTGGAT-GTTAAGGAGTTTTGTCGGGAGATTGGAGTTGATAAAAGCGTTTTCAAA 992
Query 1003 GTGTGGATGCATAACAACAAGATTTCAGGACGCAGCGGCGCTAGAAGAGCTAACGGCGGA 1062
||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 993 GTGTGGATGCACAACAACAAGATTTCAGGACGCGGCGGAGCTAGAAGAGCTAACAGCGGA 1052
Query 1063 G-TAGTAGTAGGAGGAGTAGGAGATAGTCGTCAGAGTGTTGTTCCGACAAATGGGTCGTT 1121
| || ||| |||||||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1053 GGTA-TAGGAGGAGGAGGAGGAGATAGTCGTGAGAGTGTTGTTCCGACGAATGGGTCGTT 1111
Query 1122 TTCTTCGACGTGAGGAAAAGAATGGAAAGCGTTGAAAAAGCGTCGTCGTTTTAGAGGCTA 1181
|||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||
Sbjct 1112 TTCTTCGACGTGAGGAAAAGAACGGAAAACGTTGGAAAAGCGTCGTCGTTT-AGAGGCTA 1170
Query 1182 ATTCtttttt 1191
||||||||||
Sbjct 1171 ATTCTTTTTT 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53440613735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5