BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15220.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488367 jgi|Araly1|488367|fgenesh2_kg.6__1501__AT5G15220.1 990 0.0
> Ahg488367 jgi|Araly1|488367|fgenesh2_kg.6__1501__AT5G15220.1
Length=758
Score = 990 bits (536), Expect = 0.0
Identities = 693/762 (91%), Gaps = 37/762 (5%)
Strand=Plus/Plus
Query 47 TCGCCGTCGTCATCTCCGGCCACGCTTGTCATCGTTCGCAAT-TAATCGAAATCGAAATT 105
||||||||||||||||||| ||||||||||||||||||| || | | || |||||||| |
Sbjct 23 TCGCCGTCGTCATCTCCGGTCACGCTTGTCATCGTTCGCTATCT-ACCGGAATCGAAAAT 81
Query 106 TTCCGATTCCTGaaaaaaaTGAATTTCTTAAACTCAGCAGCATCCATTTGCAGAAGAGTT 165
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 TTCCGATTCCTG--AAAAATGAATTTCTTAAACTCAGCAGCATCCATTTGCAGAAGAGTT 139
Query 166 AGTTTGAGGGAACTGATCACTGAGGTTCCTGCTTATAGTGGCAGTAGCATTTCCGATGGT 225
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 AGTCTGAGGGAACTGATCACTGAGGTTCCTGCTTATAGTGGCAGTAGCATTTCCGATGGT 199
Query 226 TCTTCAAGTGGCTTGAGTTTGGTCTTCAAGCGTTGGGCTACTAAGAAAACTGCTGGTTCT 285
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 200 TCTTCAAGTGGGTTGAGTTTGGTTTTGAAGCGTTGGGCTACTAAGAAAACCGCTGGTTCT 259
Query 286 ACAAAGAACGGTCGTGACTCTAATCCCAAGTTTCTCGGTGTTAAGAAATTCGGAGGAGAG 345
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 260 ACAAAGAATGGTCGTGACTCTAATCCAAAGTTTCTTGGTGTTAAGAAATTCGGAGGAGAG 319
Query 346 AGTGTGATACCAGGAAACATCATAGTTCGTCAACGGGGAACTCGGTTTCATCCTGGAGAC 405
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 320 AGTGTGATACCTGGAAACATCATAGTTCGTCAACGTGGAACTCGGTTTCATCCTGGAGAC 379
Query 406 TATGTGGGGATTGGTAAGGACCATACTCTGTTTGCATTGAAGGAAGGACGAGTCAGGTTC 465
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 380 TATGTCGGGATCGGTAAGGACCATACTCTGTTTGCCTTGAAGGAAGGACGAGTCAGGTTC 439
Query 466 GAGAAAAGCAAGATTACAGGACGCAAATGGATTCATGTTGATCCAACAGGTGGTCATGTT 525
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GAGAAAAGCAAGATAACAGGACGCAAATGGATTCATGTTGATCCAACAGGTGGTCATGTT 499
Query 526 CTTCACCCTATCTACACAAAAGCTGCAGCTGCTCAATCGACTAAGTTGAAGACAGCTTCA 585
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 500 CTTCACCCTATCTACAGAAAAGCTGCAGCTGCAAAATCGACTAAGTTGAAGACAGCTTCA 559
Query 586 TAGTCGTGAATAC---T-GATTGCAACAATCTAAACGTGGTTTTCATTTCCTTTAGATCA 641
|||||||||| || | |||| |||| ||||||||||| | ||| | |
Sbjct 560 TAGTCGTGAAAACACATTGATT-CAACCATCTAAACGTG-T---CAT-------A--T-- 603
Query 642 TGTGATCTCTCGAGTAAAAGATGATGCTATCTTAGAGCAG-AACCACTCAATTCAATAAC 700
| |||||||||||| ||||||||| ||||||||| ||| ||| ||||| ||||| |||
Sbjct 604 -G--ATCTCTCGAGTATAAGATGATGGTATCTTAGAACAGCAAC-ACTCAGTTCAACAAC 659
Query 701 ATCTGCTGTTTTGTTTCCCTCTAGTCTTTGTCTGGATTTTGATGAAGGGCTTTGTTTGGA 760
|||||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||
Sbjct 660 ATCTGCTGTTTTGTTTCCCT--AGTCTCTGTCTGGATTTTGATGATGGGCTT-GTTTGGA 716
Query 761 TTCAACAAATCAAGTTTTATT-----CGGAAATAGATGTTAA 797
|||||||||||||||||| || ||||||||||||||||
Sbjct 717 TTCAACAAATCAAGTTTTTTTTTTTTCGGAAATAGATGTTAA 758
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 7 TTCCATCCTAATCGCGCTTCCGTCGCCG 34
||||||||||||||||||||||||||||
Sbjct 1 TTCCATCCTAATCGCGCTTCCGTCGCCG 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5