BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15230.1
Length=629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488368 jgi|Araly1|488368|fgenesh2_kg.6__1502__AT5G15230.1 869 0.0
> Ahg488368 jgi|Araly1|488368|fgenesh2_kg.6__1502__AT5G15230.1
Length=615
Score = 869 bits (470), Expect = 0.0
Identities = 580/628 (92%), Gaps = 28/628 (4%)
Strand=Plus/Plus
Query 10 AAACTCCTCTCTCAGTACACTTCTTTTCATACCT----C-----AAGAGACTAAAACTAG 60
|||||||||||||||||||||||||||||||||| | |||| || ||||||||
Sbjct 1 AAACTCCTCTCTCAGTACACTTCTTTTCATACCTCAAACAAAAAAAGATACCAAAACTAG 60
Query 61 TTTGAGGAGATTTAGAGGAGTGTTTGGTTCTTTGGATAACAATATCCCAAACTGAAAATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGAGGAGATTTAGAGGAGTGTTTGGTTCTTTGGATAACAATATCCCAAACTGAAAATG 120
Query 121 GCTAAGTCATATGGAGCTATCTTCCTCTTGACCCTCATTGTCCTCTTCATGCTTCAAACC 180
|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 GCTAAGTCATGTGGAGCTATCTTCCTCTTGGCTCTCATTGTCCTCTTCATGCTTCAAACC 180
Query 181 ATGGTTATGGCCTCAAGTGGATCTAATGTGAAGTGGAGCCAGAAACGTTATGGACCAGGA 240
|| |||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 181 ATTGTTATGGCCTCAAGTGGATCTAATGTAAATTTGAGCCAGAAACGTTATGGACCAGGA 240
Query 241 AGCCTGAAACGT-ACCCAATGCCCATCGGAATGTGATAGGAGGTGTAAAAAGACACAGTA 299
|||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 AGCCTGAAACGTTACC-AATGCCCATCGGAATGCGATAGGAGGTGTAAAAAGACACAGTA 299
Query 300 CCACAAGGCTTGCATTACGTTCTGCAACAAATGCTGCAGGAAGTGTCTCTGTGTGCCTCC 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CCACAAGGCTTGCATTACGTTCTGCAACAAATGCTGCAGAAAGTGTCTCTGTGTGCCTCC 359
Query 360 GGGTTACTATGGGAACAAACAAGTTTGCTCCTGCTACAACAACTGGAAAACTCAAGAGGG 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGGTTACTATGGGAACAAACAAGTTTGCTCTTGCTACAACAACTGGAAAACTCAAGAGGG 419
Query 420 TGGACCAAAATGCCCTTGAAAAAATCTCCCTT--CGTTCC-CTTTTTAT--AATAAAAAT 474
|||||| |||||||||||||| |||||| ||| |||||| |||||| | |||||||||
Sbjct 420 TGGACCTAAATGCCCTTGAAATAATCTCACTTATCGTTCCTCTTTTTTTTTAATAAAAAT 479
Query 475 TTTCAACTATAACTAAATTTCCTTTGATCAATGTTTTATCTACTTTATTCCTAATGTTGT 534
| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 480 GT-CAACTATAACTAAATCTCCTTTGATGAATGTTTTATCTACTTTATTCCGAATGTTGT 538
Query 535 AATGTTATGTCACTCCTTTTCGGATTTTGTTCTAAATCCTaaaaaaaaTGAGAGTGGCCC 594
|||||||||||||||||||| | || |||||||||||||||| |||||||||||
Sbjct 539 AATGTTATGTCACTCCTTTT-G--TT-----CTAAATCCTAAAAAAA-TGAGAGTGGCC- 588
Query 595 TATGAATGATATTTTTCATGAATACTTG 622
||||||||||||||| ||||||||||||
Sbjct 589 TATGAATGATATTTT-CATGAATACTTG 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23026241868
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5