BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15240.1
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488371 jgi|Araly1|488371|fgenesh2_kg.6__1505__AT5G15240.1 2244 0.0
> Ahg488371 jgi|Araly1|488371|fgenesh2_kg.6__1505__AT5G15240.1
Length=1421
Score = 2244 bits (1215), Expect = 0.0
Identities = 1356/1425 (95%), Gaps = 6/1425 (0%)
Strand=Plus/Plus
Query 1 CTtctctctatctatttccttcgtctctcgatctctccgtctctctctctttgtctctTC 60
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CTTCTCTCTATCTATCTCCTTCGTCTCTCGATCTCTCCG--TCTCTCTCTTTGTCTCTTC 58
Query 61 GATATCCAAAGAGCAGAGTCAAAGACTAAACAAGTATGAGCGAGGACAAAGATTACATGT 120
|| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 59 GACATCGAAAGAGCAGAGTCAAAGACTAAACAATTATGAGCGAGGAGAAAGATTACATGT 118
Query 121 CGGAGCCATTTATCGTTAAGAAGATTGATGATGAAGAATCATTGCTTGATGATTATAATC 180
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 119 CGGAGCCATTTATCGTTAAGAAGATTGATGATGAAGAAGCATCGCTTGATGATTATAATT 178
Query 181 CACAGGGCAATACTTCTTTCTCCAAGACTTGTTTCCATGGCATTAACGCCTTATCAGGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 179 CACAGGGCAATACTTCTTTCTCCAAGACTTGTTTCCATGGCATTAACGCTTTATCAGGTG 238
Query 241 TGGGTATATTATCGGTCCCTTATGCCTTAGCATCCGGAGGATGGCTAAGTTTGATCATAC 300
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TGGGTATATTATCGGTTCCTTATGCTTTAGCATCCGGAGGATGGCTAAGTTTGATCATAC 298
Query 301 TTTTCACCGTAGCGATCACAACTTTCTACTGTGCCATTCTCATTAAGAGATGTATGGAAA 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 TTTTCACCGTAGCGATCACAACTTTCTACTCTGCCATTCTCATTAAGAGATGTATGGAAA 358
Query 361 TGGATCCACTTCTTAGATCATACCCGGACATTGGCTACAAAGCCTTTGGAAACACAGGAC 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGATCCACTTCTTAGATCTTACCCGGACATTGGCTACAAAGCCTTTGGAAACACAGGAC 418
Query 421 GTGTTATCGTCTCCATCTTCATGAACCTCGAGCTTTACCTAGTTGCAACTAGTTTCTTGA 480
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 419 GTGTCGTCGTCTCCATCTTCATGAACCTCGAGCTTTACCTAGTCGCCACTAGTTTCTTGA 478
Query 481 TCCTAGAAGGTGACAACCTTAACAAACTCTTCTCAAACGTTGGACTCAACTTCATGGGGC 540
|| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 479 TCTTAGAAGGTGACAACCTTAACAACCTCTTCTCAAACGTTGGAGTCAACTTCATGGGGC 538
Query 541 TTGAATTCCAAGGCAAGCAAATGTTCATCATCATGGTGGCTCTCATTATTCTTCCTTCGG 600
||||||||||||||||||||||||||||| || | || ||||||||||||||||| ||||
Sbjct 539 TTGAATTCCAAGGCAAGCAAATGTTCATCGTCCTTGTAGCTCTCATTATTCTTCCCTCGG 598
Query 601 TTTGGTTAGACAATATGAGGATTCTTTCTTATGTTTCCGCGAGTGGTGTCTTTGCTTCCG 660
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 TTTGGTTAGACAATATGAGGATTCTTTCTTATATTTCCGCGAGTGGTGTCTTTGCTTCC- 657
Query 661 GGGTT-ATTCTTGCTTCTATCTTTTCGGTTGGAGCTTTTGAAGGCGTAGGGTTCAAGAAC 719
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 GGGTTGATTCTTGCTTCTATCTTTTCGGTTGGAGCTTTTGAAGGAGTAGGGTTCAAGAAC 717
Query 720 AATGACTCAGAGGTCTTTCGACTTAATGGAGTCGCTACTTCGGTGAGCTTATACGCGTTT 779
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 AATGACTCAGAGGTCTTTCGTCTTAATGGAGTCGCTACTTCGGTGAGCTTATACGCGTTT 777
Query 780 TGTTATTGCGCTCATCCAGTTTTCCCAACTCTATACACTTCCATGAAGAACAAACGCCAA 839
||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 778 TGTTACTGCGCTCATCCGGTTTTCCCAACTCTAGACACTTCCATGAAGAACAAACGGCAA 837
Query 840 TTCTCAAACGTTATGATTATATGTTTCACAATATGCACCTTCATATATGCATCAGTGGCG 899
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 838 TTCTCAAACGTTATGATTATATGTTTCACTATATGCACATTCATATATGCATCAGTGGCG 897
Query 900 GTATTGGGTTACTTAATGTATGGATCAGATGTTGAATCACAGATCACTTTGAATCTTCCT 959
||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 898 ATATTGGGGTACTTAATGTATGGATCAAATGTTGAATCACAGATCACACTGAATCTTCCT 957
Query 960 ACTGATAAGCTTAGTTCAAAAGTGGCGATATGGACTACATTGGTCAACCCAATAGCTAAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACTGATAAGCTTAGTTCAAAAGTGGCGATATGGACTACATTGGTCAACCCAATAGCTAAG 1017
Query 1020 TTTGCTCTCATGGTTACACCTATTATTGACGCAATGAGAAGCCGGTTTTCTCGAGTTTTG 1079
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1018 TTTGCTCTCATGGTTACACCAATTATTGACGCAATGAGAAGCCGGTTTTCTCGATTTTTG 1077
Query 1080 CCTAATAAAAGAGCTTCTGGATTTTTGCTAAGTACAATACTAGTTACTAGCAATGTGATT 1139
||||||||||||||||| || ||||| || ||||| || | ||||||||||||||||||
Sbjct 1078 CCTAATAAAAGAGCTTCCGGGTTTTTACTTAGTACGATGTTGGTTACTAGCAATGTGATT 1137
Query 1140 GTGGCATTGCTTCTTCCGTTTTTTGGTGATCTTATGAGTCTTGTGGGAGCATTCTTGAGC 1199
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1138 GTGGCATTGCTTCTTCCATTTTTCGGTGATCTTATGAGTCTTGTCGGAGCATTCTTGAGC 1197
Query 1200 GCATCCGCATCGGTTATATTGCCATGTTTATGTTACTTAAAGATCTCTGGGAAATATCAA 1259
|| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1198 GCTTCCGCATCGGTTATATTGCCATGTTTGTGTTACTTAAAGATTTCCGGGAAATATCAA 1257
Query 1260 AGACTCGGATTCGAAACATTGGTGCTCATCGGAATCACTCTAACCGGTATCGTGGTTGTG 1319
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1258 AGACTCGGATTCGAAACACTGGTGCTCATCGGAATCATTCTAACCGGTATCGTGGTTGTG 1317
Query 1320 ATAACCGGAACTTACCAAGCGGTCAAGGACATTTTTGGTCGATTTTGAAATCCCAATAGG 1379
||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1318 ATAACGGGAACTTACCAAGCGATCAAGGACATTTTTGGCCGATTTTGAAATCCCAATAGG 1377
Query 1380 TGAAGT-TTAGCTTATAGAGTATTTGTTTAGGAAGATATTTGTAC 1423
|||||| || ||||||||| |||||||||||||| ||||||||||
Sbjct 1378 TGAAGTCTT-GCTTATAGAATATTTGTTTAGGAATATATTTGTAC 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5