BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15260.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488373 jgi|Araly1|488373|fgenesh2_kg.6__1507__AT5G15260.1 1570 0.0
> Ahg488373 jgi|Araly1|488373|fgenesh2_kg.6__1507__AT5G15260.1
Length=1194
Score = 1570 bits (850), Expect = 0.0
Identities = 1092/1200 (91%), Gaps = 52/1200 (4%)
Strand=Plus/Plus
Query 209 TGTTC-TCTACTTTCAACCCTCGCTAACGTTTTCGACTTCTCCACATCTCGATTCAGCTT 267
||||| ||| |||||||||||||| |||||| ||||||||||||||||| || | |
Sbjct 20 TGTTCATCTTGTTTCAACCCTCGCTTACGTTTCCGACTTCTCCACATCTC---TC-G-AT 74
Query 268 CTCCTTCGTCCAAATTCGATTAGATTTTGAATTGGGAAGCTGACAAGTTTGAAGATTTCT 327
| | | | |||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 75 -T-C--AG--C---TTCGATTAGA-TTTGAATTGGGAAGTTGACAAGTTTGAAGATTTTT 124
Query 328 CATTTGATGGATTGATCTGATTTCGCAATTTTCATTTTCCCGTTTCGGGTTCAATTGATT 387
||||| ||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 125 CATTTAATGGATTGATCTGATTTCGAAATTTTCA-TTACCCGTTTCGGGTTCAATTGATT 183
Query 388 TCGATCAGATTGAACCCAATCCAAATC-CAAT-CAGGGCTACTTCGATTTGATCTGTTTC 445
|||||||||||||||||| | || |||| || ||||||||| ||| ||||||||||
Sbjct 184 TCGATCAGATTGAACCCAGT--TGTTCTCAATCCAAGGCTACTTCAATTGGATCTGTTTC 241
Query 446 CTC--AAAAAAGGATTCGACTTTCTCTGAGATGGTATATTTCCAGAACTCAATCTCCC-T 502
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 242 CTCAAAAAAAAGGATTCGACTTTCTCTGAGATGGTATATTTCCAGAACTCAATC-CCCGT 300
Query 503 CGTAGACCAATCTCCAATCATGGCTCACTCACCAGATTTTCATCATCATTCAAAACAATC 562
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 301 CGTAGACCAATCTCCAATCATGGCTCAATCAGCAGATTTTCATCATCATTCAAAACAATC 360
Query 563 AAGAACCAGCAGCAGCAACAGAAAG---TCATCA---TCGTCAAGCTGTTCTTCAAATTT 616
||| | ||||||| |||||||||| |||||| |||||||||||||||||| ||||
Sbjct 361 AAG-A--AGCAGCACCAACAGAAAGTCATCATCATCGTCGTCAAGCTGTTCTTCACATTT 417
Query 617 CTC-TGTTTGCTGTGACGGATCTAGATCAGCTGCTATCGATGTTGTGATCTTAATCGCTG 675
| | || ||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 418 C-CAAGTCTGCTGCGACGGATCTAGATCAGCTGCAATCGATGTTTTGATCTTAATCGCTG 476
Query 676 TGATCACATCCTCCGGGTTTTTAATCTTCCCTTACATCAAATTCATCACTATCAAATCTG 735
|||||||||| |||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 477 TGATCACATCTTCCGGGTTCTTGATCTTCCCTTACATCAAATTCATCACTGTCAAATCTG 536
Query 736 TTGAAATCTTCTCTGAGCTCTCTTGTTTAGTGAAAGAAGAGATTTTGCGTAACCCTGATC 795
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 537 TTGAAATCTTCTCAGAGCTCTCTTGTTTAGTCAAAGAAGAGATTTTGCGTAACCCTGATC 596
Query 796 CAATTGTCTACGGTTTAATAGCTTTGAGTATCTCGTGTACTGCGTTATCTGCTTGGATGA 855
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 CAATTGTGTACGGTTTGATAGCTTTGAGTATCTCGTGTACTGCGTTATCGGCTTGGATGA 656
Query 856 TTGTTATACTAC-TGTGTAGTCGTCATCGATGTGGGAAACCGAACTGTAAAGGGCTTAGG 914
|||||||||| | |||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 657 TTGTTATACT-CTTGTGTAGTCGTCATCGATGTGGGAAACCCAATTGCAAAGGGCTTAGG 715
Query 915 AAAGCTAATGCTGAGTTTGATATTCAGTTAGAGACTGAGGATTGTGTTAAGAGCTCTAAT 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAAGCTAATGCTGAGTTTGATATTCAGTTAGAGACTGAGGATTGTGTTAAGAGCTCTAAT 775
Query 975 AGTGGCAAGAGTGTTAGTAAGAAGGGTTTGTTTGAGTTGCCTCGTGATCATCACCGTGAG 1034
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 776 AGTGGCAAGAGTGTTAGCAAGAAGGGTTTGTTTGAGTTGCCTCGTGACCATCACCGTGAG 835
Query 1035 TTAGAGGCGGAGTTGAAGAAGATGGCTCCACCTAATGGGCGAGCCGTGCTTGTTTTTCGG 1094
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 836 TTAGAGGCGGAGTTGAAGAAGATGGCTCCACCGAATGGGAGAGCCGTGCTGGTTTTTCGG 895
Query 1095 GCTAAATGTGGGTGTTCGGTTGGGAGATTAGAGGTTCCTGGACCTAAGAAGCAGCAACTG 1154
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCGAAATGTGGGTGTTCTGTTGGGAGATTAGAGGTTCCTGGACCTAAGAAGCAGCAACTG 955
Query 1155 CAGCAAAGGAAGGTTAAGAAATGAAGTATAAA-GGTTCAATCTTTTTGAGGTAAAG--G- 1210
|||||||||||||| ||||| ||| | | ||| |||| |||||||||||||||||| |
Sbjct 956 CAGCAAAGGAAGGTCAAGAAGTGATG-AGAAAAGGTTTAATCTTTTTGAGGTAAAGATGG 1014
Query 1211 --T--T-A----TTatgatgatgatgatgatTACTTTGATTAGTTTATAAACAACCtttt 1261
| | | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1015 GATCATTACAGGTTATGATGATGATGATGATTACTTTGATTAGCTTATAAACAACCTTTT 1074
Query 1262 tttCTTTTGGGTTTAGTTATTTTCAGAAGAACTTCTTACAGAAACTAATACTATGTTAAA 1321
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1075 TTTCTTTTTGGTTTAGTTATTTTCACAAGAACTTCTTACAGAAACTAATACTATGTTAAA 1134
Query 1322 TCTCCATGTGTTTAAATAAAAGCTTTACAAGGATATTGCAACAGAAAATGGTTAACAGTG 1381
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1135 TCTCCATGTGTTTAAATAAAAGCTTTACAAGGATATTACAAGAGAAAATGGTTAACAGTG 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5