BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15270.2
Length=2806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488375 jgi|Araly1|488375|fgenesh2_kg.6__1509__AT5G15270.1 2748 0.0
> Ahg488375 jgi|Araly1|488375|fgenesh2_kg.6__1509__AT5G15270.1
Length=2456
Score = 2748 bits (1488), Expect = 0.0
Identities = 1693/1786 (95%), Gaps = 37/1786 (2%)
Strand=Plus/Plus
Query 1 AACAACAGATTAAGCTCAGG-GCAAACCCTAGAAATACTGA-TTACCCCCAAATCCGAAG 58
|||||| |||||| ||| || |||||||||||||| ||||| ||| ||||||||| ||||
Sbjct 1 AACAACCGATTAAACTC-GGCGCAAACCCTAGAAACACTGATTTA-CCCCAAATCGGAAG 58
Query 59 AAACGATTTCGTCTGGAGATATCAAAGATTTGACAATGTCACCGGATCATAGAATGTCAC 118
|||||||||||||||||||||||||||| || | | | | ||||||||
Sbjct 59 AAACGATTTCGTCTGGAGATATCAAAGA-TT-----T-T------A-C----AATGTCAC 100
Query 119 CGGATCATAGAGATAGCCATAGAAAGAGGTCTCGTCCTCAGTCTGACTACGATGATAACG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 CGGATCATAGAGATAGCCATAGAAAGAGGTCTCGTCCTCAGTCTGACTACGATGATAACG 160
Query 179 GTGGAAGCAAACGGAGATATCGTGGTGACGATAGAGATTCACTTGTGATTGATCGCGATG 238
||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct 161 GTGGAAGCAAACGAAGATATCGTAGTGATGATAGAGATTCACTTGTAATTGATCGCGATG 220
Query 239 ACACTGTATTCCGATACCTGTGCCCGGTAAAAAAGATTGGGAGTGTTATTGGTAGAGGAG 298
| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 221 ATACTGTATTCCGATATCTGTGCCCGGTTAAAAAGATTGGGAGTGTTATTGGTAGAGGTG 280
Query 299 GTGATATTGTCAAGCAATTGAGGAAT-GATACTAGATCGAAAATTAGAATAGGCGAAGCA 357
|||| |||||||||||||||||| || || ||||||||||||||||||||||| ||||||
Sbjct 281 GTGAGATTGTCAAGCAATTGAGG-ATGGACACTAGATCGAAAATTAGAATAGGGGAAGCA 339
Query 358 ATTCCGGGATGTGATGAACGTGTTATTACTATCTATAGCCCTAGTGATGAGACCAATGCC 417
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 340 ATTCCGGGATGTGATGAACGTGTGATTACGATCTATAGCCCTAGTGATGAGACCAATGCC 399
Query 418 TTTGGAGATGGAGAGAAAGTTCTTTCTCCTGCGCAGGATGCTTTGTTTAGGATTCATGAT 477
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 400 CTTGGAGATGGAGAGAAAGTTCTTTCTCCTGCGCAGGATGCTTTGTTCAGGATTCATGAT 459
Query 478 AGAGTAGTTGCTGATGATGCG-AGAAGTGAAGATAGCCCTGAAGGAGAGAAGCAAGTTAC 536
||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||
Sbjct 460 AGAGTAGTTGCTGATGATGCGCA-AAGTGAAGATAGCTCTGAAGGAGAGCAGCAAGTTAC 518
Query 537 TGCTAAGCTGCTTGTACCTTCGGATCAGATTGGTTGTATTCTTGGGAGAGGTGGCCAAAT 596
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 519 TGCTAAGCTGCTTGTTCCTTCGGATCAGATTGGATGTATTCTTGGGAGAGGTGGCCAAAT 578
Query 597 TGTTCAGAACATTCGGAGTGAAACTGGTGCTCAGATTCGTATCGTCAAGGACAGAAACAT 656
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 579 TGTTCAGAACATTCGGAGTGAAACTGGTGCTCAAATTCGCATCATCAAGGACAGAAACAT 638
Query 657 GCCTCTATGTGCCTTGAATTCAGATGAGCTCATTCAGATATCTGGAGAAGTGCTCATTGT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GCCTCTATGTGCCTTGAATTCAGATGAGCTCATTCAGATATCTGGAGAAGTGCTCATTGT 698
Query 717 TAAGAAGGCACTGCTTCAGATTGCTTCTCGCCTTCATGAAAATCCCTCACGTAGTCAGAA 776
||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 699 TAAGAAGGCTCTGCATCAGATTGCGTCTCGCCTTCACGAAAATCCCTCACGTAGTCAGAA 758
Query 777 TCTACTTTC-T-T-C---TTCCGGTGGATATCCTGCTGGCTCACTCATGAGCCATGCGGG 830
|||||||| | | | |||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 759 CCTACTTTCTTCTGCAATTTCCGGCGGATATCCTTCTGGCTCGCTCATGAGCCATGCGGG 818
Query 831 TGGTCCTCGACTTGTAGGTTTAGCACCACTGATGGGTTCCTATGGACGTGATGCAGGAGA 890
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 819 TGGTCCTCGACTTGTAGGAATAGCACCACTGATGGGTTCCTATGGACGTGATGGAGGAGA 878
Query 891 TTGGTCACGCCCTTTATACCAACCTCCAAGAAATGACCCACCGGCAACAGAGTTCTTTAT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TTGGTCACGCCCTTTATACCAACCTCCAAGAAATGACCCACCGGCAACAGAGTTCTTTAT 938
Query 951 TCGGCTAGTTTCCCCAGTTGAAAACATTGCAAGTGTTATAGGAAAAGGTGGTGCTCTAAT 1010
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 939 TCGGCTAGTTTCCCCAGTTGAAAACATTGCAAGTGTTATAGGGAAAGGTGGTGCTCTAAT 998
Query 1011 CAATCAGCTTCGACAGGAAACCAGAGCAACCATTAAAGTTGATAGCTCTAGAACTGAAGG 1070
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 999 CAATCAGCTTCGACAGGAGACCAGAGCAACCATTAAAGTTGATAGCTCCAGAACTGAAGG 1058
Query 1071 AAACGATTGTTTGATAACTATATCAGCAAGAGAGGTTTTTGAGGATGCGTATTCCCCAAC 1130
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1059 AAACGATTGTTTAATAACTATTTCAGCAAGAGAGGTTTTTGAGGATGCGTATTCCCCAAC 1118
Query 1131 CATTGAAGCAGTAATGCGGCTGCAACCAAAATGCAGCGACAAGGTGGAAAGAGATTCTGG 1190
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1119 CATTGAAGCAGTTATGCGGCTGCAACCTAAATGCAGTGACAAGGTGGAAAGAGATTCTGG 1178
Query 1191 ACTTGTTTCATTCACCACTCGTCTTCTTGTGCCAAGTTCTAGGATTGGTTGTATCCTTGG 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 ACTTGTTTCATTCACCACTCGTCTTCTTGTGCCAAGTTCTAGGATTGGTTGTATCCTTGG 1238
Query 1251 TAAAGGAGGAGCCATCATAACTGAGATGAGAAGAATGACCAAAGCTAACATCCGCATACT 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TAAAGGAGGAGCCATCATAACTGAGATGAGAAGAATGACCAAAGCTAACATCCGCATACT 1298
Query 1311 TGGGAAGGAAAATCTTCCAAAAGTTGCATCTGACGATGATGAGATGGTTCAGATTTCTGG 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 CGGGAAGGAAAATCTTCCAAAAGTTGCATCTGACGATGATGAGATGGTTCAGATTTCTGG 1358
Query 1371 AGAACTTGACGTTGCCAAGGAAGCTCTCATACAAATTACATCAAGATTAAGAGCCAATGT 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 AGAACTTGACGTTGCCAAGGAAGCTCTCATACAAATTACATCAAGATTAAGAGCCAATGT 1418
Query 1431 TTTTGACCGAGAAGGTGCTGTTTCTGCACTTATGCCGGTCTTGCCTTATGTTCCCGTTGC 1490
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1419 TTTTGACCGAGAAGGTGCTGTTTCTGCACTTATGCCGGTGTTGCCTTATGTTCCTGTTGC 1478
Query 1491 ACCAGATGCTGGTGATAGATTTGACTATGATAGTAGAGATAGCAGAAGACTTGAACGCGG 1550
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1479 ACCAGATGCTGGTGATAGATTGGACTATGATAGTAGAGATAGCAGAAGACTTGAACGCGG 1538
Query 1551 GAATCCTTATCCTGGTGGTTATGGCTCAAGTGG-TGTGTCTGCTGAAGGGTACTCGCCTT 1609
||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
Sbjct 1539 GAATCCTTATCCTGGTGGTTATGGCTCAAGTGGCTTT-TCTGCTGAAGGGTACTCGCCAT 1597
Query 1610 ATGGTGCGCCGGTTGGTGGTAGTAGTAGTACTCCATATGGAGTGTATGGAGGTTATGCAT 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 ATGGTGCGCCGGTTGGTGGTAGTAGTAGTACTCCATATGGAGTGTATGGAGGTTATGCAT 1657
Query 1670 CTGGACGCAGTAGCAGTTCTGGGTTATCAAGTCATTCTTCAACCTATCGACGCAGAAACT 1729
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1658 CTGGACGCAGTAGCAGTTCTGGGTTATCAAGCCATTCTTCTACCTACCGACGCAGAAACT 1717
Query 1730 ATGATTACTAGAAGCTATTGGTGGAGGTGATTAAAAAG-GTTAGAT 1774
|||||||||||||||||||||| | | ||||||||||| || ||||
Sbjct 1718 ATGATTACTAGAAGCTATTGGTTG-G-TGATTAAAAAGTGTGAGAT 1761
Score = 1026 bits (555), Expect = 0.0
Identities = 679/734 (93%), Gaps = 28/734 (4%)
Strand=Plus/Plus
Query 1920 TAAAACAGTGTGAGATCCTGAAGCCTGAAGCCAA-CCCACAGCCCACAGTTGAAGCC-TT 1977
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1747 TAAAA-AGTGTGAGATCCTGAAGCCTGAAGCCAACCCCACAGCCCACAGTTGAAGCCTTT 1805
Query 1978 TTCACCAAACAAGATGACAAAGCTGAACCACCAAACTCTACCTAGGAGAACTGATTACAT 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 TTCACCAAACAAGATGACAAAGCTGAACCACCAAACTCTACCTAGGAGAACTGATTACAT 1865
Query 2038 GTGGATGAGATATTTAAGTTTGTTTCAAAACTTTCCATGTCCTCTTGTAACCAAAA-TAC 2096
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 1866 GTGGATGAGATATTTAAGTTTCTTTCAAAACTTTCCATGTCCGCTTGTAACCAAAAATAC 1925
Query 2097 TGCCAAGTTCCTACCCATTAAACCTTATCCAGTTGGCCTTGGCTGTAATGCTGTCTATCT 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 TGCCAAGTTCCTACCCATTAAACCTTATCCAGTTGGCCTTGGCTGTAATGCTGTCTATCT 1985
Query 2157 TTCAGTTTACCTTTGTCTTTCCTTGGATTAGATTCAGAAAACCTTAGTTTGGTTGTGCGT 2216
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1986 TTCACTTTACCTTTGTCTTTCCTTGGATTAGATTCAGAAAACCTTAGTTTGGTTGTG--T 2043
Query 2217 AGTTCCGTTTTGTATGAATTATATA-TGTTAAAAGCTCTCATGTACTGGTTAAGCTTACA 2275
||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||
Sbjct 2044 AGTTCCGTTTTGTATGAATTATATAATTTTAAACGCTCTCATGTACTGGTTTTGCTTACA 2103
Query 2276 GCACGCTTAAGCCTCTCTCCCTGACAGGTTTCGGAATCACAAACTATTTTACCTTATAAT 2335
||| ||||||||||||||| |||||||||| || ||||||||||||| ||||| ||||
Sbjct 2104 GCATGCTTAAGCCTCTCTC--TGACAGGTTTTGGTATCACAAACTATT--ACCTTGTAAT 2159
Query 2336 AATCTCTCAGATTTTTAAAAGATCGTATGCAGGGAAAGAGATAAGTGAGAATCTCTTGGT 2395
|||||||| |||||||||||| |||||||||| |||||| ||||||||||| ||| |
Sbjct 2160 ---CTCTCAGAGTTTTAAAAGATCTTATGCAGGGAGAGAGATGAGTGAGAATCTATTGCT 2216
Query 2396 TCTTGTCGACATTGTTCAGGTTAATCAACCACTTGGGCATATCAATCTGTTGTGCCCATT 2455
||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2217 TCTTGTCGACATTGTTCAGGT-------------GG-CATATCAATCTGTTGTGCCCATT 2262
Query 2456 TGGTCCACATGAAAGGTATATACAATTCTTCTTCTCTCTTTGTTGTTTCTTTGCACATAT 2515
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2263 TGGTCCACTTGAAAGGTATATACAATTATTCTTCTCTCTTTGTTGTTTCTTTGCACATAT 2322
Query 2516 GCTTCTCTGCTAGCAGTTCAAAGACAGGTTGCTATTTCTGGAAGATTGTCGTTTTTGGAA 2575
||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2323 ACTTCTCTGCCAGCAGTTAAAAGACAGGTTGCTATTACTGGAAGATTGTTGTTTTTGGAA 2382
Query 2576 ACCAATCTTTTGACCATTAGATTGTCGATAGCTCCATCTCGCCATCAGTTTGCGCGGTGA 2635
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2383 ACCAATCTTTTGACCATTAGATTGTCGATAGCTCCATCTCGCCATAAGTTTGCACGGTGA 2442
Query 2636 ACACTCCGAAAGAT 2649
|||||| |||||||
Sbjct 2443 ACACTCGGAAAGAT 2456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105890881100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5