BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15290.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488377 jgi|Araly1|488377|fgenesh2_kg.6__1511__AT5G15290.1 1179 0.0
> Ahg488377 jgi|Araly1|488377|fgenesh2_kg.6__1511__AT5G15290.1
Length=783
Score = 1179 bits (638), Expect = 0.0
Identities = 725/767 (95%), Gaps = 6/767 (1%)
Strand=Plus/Plus
Query 31 ACCTAACTTCCTTCCCAAGAAACCTAGCAAACCTTAAAGAGTAAAGAGAGAAAATGAAGT 90
|||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 17 ACCTAACTTCCTTCTCAAGAAACCCCGAAAACCTTAAAGAGCAAAGAGAGAAAATGAAGT 76
Query 91 CCGGTCAGGCTGAAATCATGGAAACAAGCAAAGGTATCCAAAAGAGCGGTCTGATGAGCA 150
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct 77 CCGGTCAGGCTGAAATCGTGGAAACGAGCAAAGGTATCCAGAAGAGCGGTCTGATGAGCA 136
Query 151 GAAGGATCGCGATTCTTGAGTTTATCCTCAGGATTGTTGCATTCTTCAACACTATAGGTA 210
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 137 GAAGGATTGCGATTCTTGAGTTCATTCTCAGGATTGTTGCATTCTTCAACACTATAGGTA 196
Query 211 GTGCAATCCTCATGGGAACCACACACGAAACTCTGCCTTTCTTTACTCAATTCATACGGT 270
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 197 GTGCAATCCTCATGGGAACCACACATGAAACTCTGCCTTTCTTTACTCAATTTATACGGT 256
Query 271 TCCAAGCAGAATACAACGACCTTCCAGCCTTAAC----GT--TTTTCGTGGTTGCAAATG 324
||||||| ||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct 257 TCCAAGCCGAATACAACGATCTTCCAGCCTTAACGTATGTCATTTTTGTGGTTGCAAATG 316
Query 325 CTGTTGTGAGTGGTTACCTCATCTTGTCTCTAACTTTGGCCTTTGTACACATCGTCAAGA 384
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 317 CTGTTGTGAGTGGCTACCTTATAATGTCTCTAACTTTGGCCTTTGTACACATCGTCAAGA 376
Query 385 GAAAGACTCAGAACACTAGAATTCTTCTTATCATCCTTGATGTGGCAATGTTGGGTCTTC 444
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 377 GAAAGACTCAGAACACTAGAATTCTTCTTATCGTCCTTGATGTGGCAATGTTGGGTCTTC 436
Query 445 TAACTTCTGGAGCATCCTCAGCAGCAGCCATTGTCTACTTGGCACACAATGGGAACAATA 504
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TAAGTGCTGGAGCGTCCTCAGCAGCAGCCATTGTCTACTTGGCACACAATGGGAACAATA 496
Query 505 AAACAAACTGGTTTGCTATTTGTCAACAGTTCAACTCCTTCTGTGAGCGTATCTCCGGTT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AAACAAACTGGTTTGCTATTTGTCAACAGTTCAACTCCTTCTGTGAGCGTATCTCCGGTT 556
Query 565 CTTTGATTGGATCTTTCATTGCCATTGTCCTCCTCATTCTTCTTATTCTCCTATCAGCCA 624
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 557 CTTTGATTGGATCTTTCATTGCCGTTGTCCTCCTCATTCTTCTCATTCTCCTATCAGCCA 616
Query 625 TTGCTCTTTCTCGACGCCATTGAAGATCTGGTGTTAGCCTGAAATATGAGTTTTCTTTTC 684
|||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 617 TTGCTCTTTCCCGACGCCACTGAAGATCTGGTCTTAGCCTGAAATATGAGTTTTCTTTTC 676
Query 685 CACTGCTTTAAGAAATGCATGGTTTGGTGTGTAAAAATGTTCACTTAAGcttttcttttc 744
|||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||| | |
Sbjct 677 CACTGCTTTAAGAAATACATGATTTGGTGTGTAAAAATGTTAACTTGAGCTTTTCTCTGC 736
Query 745 atttgtgctttttcttttcTCATCTCCATTGATATTTTGTGTGTGAT 791
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 737 ATTTGTGGTTTTTCTTTTCTCATCTCCATTGATATTTTGTGTGTGAT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5