BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15310.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1 2058 0.0
Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1 577 8e-164
Ahg484660 jgi|Araly1|484660|fgenesh2_kg.5__652__AT3G28910.1 139 5e-32
Ahg937505 jgi|Araly1|937505|scaffold_501696.1 111 1e-23
Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 106 5e-22
Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2 65.8 8e-10
> Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1
Length=1310
Score = 2058 bits (1114), Expect = 0.0
Identities = 1257/1322 (95%), Gaps = 25/1322 (2%)
Strand=Plus/Plus
Query 1 AAAAGGGATTCATTTGTTGTGTGTGTCTTTCTCTTTCCTCTATATATCATCCTTCTTCAC 60
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 1 AAAAGGGATTCATTTGTTGTGTGTGTCTTTCTCTCTCTTCTATATATCAACCTTCTTCAC 60
Query 61 TGAGATATGCTTCACTTGTAACATTTCCACAACTGTAGCCAAACTTTTGTGT-TCTGATA 119
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 61 TGAGATATGCTTCACTTGTAACATTTCCACAACTGTAGCC-AACTTTTGT-TCTCTGATA 118
Query 120 GTGATGATCATGATCATCACATGA-ATA-AGTAGAAGATATCTCTTACCTTC-TCCTTCT 176
||||||||||||||||| | || | ||| | || |||||||||||||||||| ||| |||
Sbjct 119 GTGATGATCATGATCATGATAT-ATATATA-TATAAGATATCTCTTACCTTCTTCC-TCT 175
Query 177 TCTAATAAGATCAGAGTTTTGGTTCTTATTTCTTTGCTC-TCA-AAACAATGGGTAGATC 234
|||||||||| |||||||||||||||| |||||| || | | ||| ||||||||||||
Sbjct 176 TCTAATAAGAACAGAGTTTTGGTTCTT-CATCTTTGTTCTTTACAAA-AATGGGTAGATC 233
Query 235 ACCGTGTTGTGACAAATTGGGTTTGAAGAAAGGACCTTGGACACCAGAGGAGGATCAGAA 294
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 234 ACCGTGCTGTGACAAATTGGGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATCAGAA 293
Query 295 ACTTTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTTCATTGCCTGAGAAAGC 354
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 294 ACTTTTAGCTTATATTGAAGAGCATGGTCATGGAAGTTGGCGTTCATTGCCTGAGAAAGC 353
Query 355 TGGTCTCCATCGATGC-GGAAAGAGTTGTAGACTAAGATGGACTAACTACCTAAGACCTG 413
|||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 354 TGGTCTTCATCGATGCGGGAAA-AGTTGCAGACTAAGATGGACTAACTACCTAAGACCTG 412
Query 414 ACATCAAAAGAGGCAAATTCAACTTACAAGAAGAACAAACCATTATCCAACTCCATGCTC 473
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 413 ACATCAAAAGAGGCAAATTCAACTTGCAAGAAGAACAAACTATTATCCAACTCCATGCTC 472
Query 474 TGTTAGGAAACAGATGGTCAGCGATTGCTACTCATTTGCCAAAGAGAACAGACAACGAGA 533
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 473 TGTTAGGAAACAGATGGTCAGCGATTGCTACTCATTTGCCTAAGAGAACAGACAACGAAA 532
Query 534 TCAAGAACTATTGGAACACTCATTTGAAGAAACGGTTAGTGAAAATGGGGATTGATCCAG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TCAAGAACTATTGGAACACTCATTTGAAGAAACGGTTAGTGAAAATGGGGATTGATCCAG 592
Query 594 TGACTCATAAACCCAAAAACGAGACTCCTTTATCTTCTCTTGGTCTATCCAAGAACGCAG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGACTCATAAACCCAAAAACGAGACTCCTTTATCTTCTCTTGGTCTATCCAAGAACGCAG 652
Query 654 CTATACTTAGCCACACTGCTCAATGGGAAAGTGCAAGGCTTGAAGCTGAAGCAAGACTAG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 653 CTATACTTAGCCACACTGCTCAATGGGAAAGTGCAAGGCTTGAAGCTGAAGCAAGGCTAG 712
Query 714 CTAGAGAATCAAAGCTTCTTCATTTACAACATTACCAAACCAAAACATCATCTCAACCTC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 713 CTAGAGAATCAAAGCTTCTTCATTTACAACATTACCAAACCAAAACATCATCTCA---TC 769
Query 774 ATCATCATCATGGATTCACTCACAAGTCATTGTTACCTAATTGGACAACAAAACCACACG 833
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||
Sbjct 770 ATCATCATCATGGATTCACTCACAAGTCATTGCTACCCAATTGGACAACAAAACCAAACG 829
Query 834 AAGATCAACAACAGCTTGAATCTCCGACATCTACAGTGTCATTCTCTGAGATGAAGGAAT 893
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AAGATCAACAACAACTTGAATCTCCGACATCTACAGTGTCATTCTCTGAGATGAAGGAAT 889
Query 894 CAATCCCGGCGAAGATAGAGTTTGTCGGATCATCAACTGGTGTGACTCTGATGAAAGAAC 953
||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 890 CAATCCCAGCGAAGATAGAGTTTGTCGGATCATCAACTGGTCTAAGTCTGATGAAAGAAC 949
Query 954 CTGAACA---CGATTGGATCAATTCAACGATGCACGAGTTTGAAACTACGCAGATGGGAG 1010
|||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 950 CTGATCAAAACGATTGGATCAACTCAACGATGCACGAGTTTGAAACTACGCAGATGGGGG 1009
Query 1011 AAGGAATCGAAGAAGGGTTCACGGGTCTCTTGCTCGGTGGTGATTCAATCGACCGGAGTT 1070
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1010 AAGGAATCGAAGAAGGCTTCACGGGTCTCTTGCTCGGTGGTGATTCGATCGACCGGAGTT 1069
Query 1071 TCTCCGGCGATAAAAACGAGACGGCCGGCGAGAGTAGTGGTGGTGACTGCAACTACTATG 1130
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1070 TCTCCGGAGAGAAAAACGAGACGGCAGGCGAGAGTAGTGGTGGTGACTGCAACTACTATG 1129
Query 1131 AGGACAACAAGAACTACTTGGACAGCATTTTTAACTTTGTAGATCCTTCACCGTCGGATT 1190
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1130 AGGACAACAAGAACTACTTGGACAGCATTTTTAACTTTGTGGATCCTTCACCGTCGGTTT 1189
Query 1191 CACC---GATGTTCTGAATCTAAGGGTTGATATTTGTTGGGAATGtttttgattcttttt 1247
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CACCACCGATGTTCTGAATC-AAGGGTTGATATTTGTTGGGAATGTTTTTGATTCTTTTT 1248
Query 1248 tagtttctagtttttGTGCTTAAACTCTGATTAGACAATTTTTAAACTAATCCAAttttt 1307
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1249 TAGTTTCTAGTTTTTGTGCTTAAACTCTGATTAGACAATTTTTAGACTAATCCAATTTTT 1308
Query 1308 gc 1309
||
Sbjct 1309 GC 1310
> Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1
Length=1412
Score = 577 bits (312), Expect = 8e-164
Identities = 559/673 (83%), Gaps = 37/673 (5%)
Strand=Plus/Plus
Query 232 ATCACCGTGTTGTGACAA-ATTGGGTTTGAAGAAAGGACCTTGGACACCAGAGGAGGATC 290
||| ||||||||||| || | | ||||||||||| |||||||||||||| |||||||
Sbjct 285 ATCGCCGTGTTGTGATAAGGCCGAG-TTGAAGAAAGGGCCTTGGACACCAGAAGAGGATC 343
Query 291 AGAAACTTTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTTCATTGCCTGAGA 350
|||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 344 AGAAACTTTTGGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTTCTTTGCCTGAGA 403
Query 351 AAGCTGGTCTCCATCGATGCGGAAAGAGTTGTAGACTAAGATGGACTAACTACCTAAGAC 410
|||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 404 AAGCCGGTCTCCAAAGATGCGGAAAGAGTTGCAGACTCAGATGGACTAACTACCTAAGAC 463
Query 411 CTGACATCAAAAGAGGCAAATTCAACT-TACAAGAAGAACAAACCATTATCCAACTCCAT 469
|||||||||| ||||||||||||| || ||||||||||||||||||| || |||||||||
Sbjct 464 CTGACATCAAGAGAGGCAAATTCA-CTGTACAAGAAGAACAAACCATCATTCAACTCCAT 522
Query 470 GCTCTGTTAGGAAACAGATGGTCAGCGATTGCTACTCATTTGCC-AAAGAGAACAGACAA 528
||||| | |||||||| |||||||| ||||| ||||| || || ||| || ||||||||
Sbjct 523 GCTCTCCTCGGAAACAGGTGGTCAGCAATTGCAACTCACTTACCCAAA-AGGACAGACAA 581
Query 529 CGAGATCAAGAACTATTGGAACACTCATTTGAAGAAACGGT-TAGTGAAAATGGGGATTG 587
||||||||||||||| |||||||| || ||||||||||| | | || ||||||||||| |
Sbjct 582 CGAGATCAAGAACTACTGGAACACACACTTGAAGAAACG-TCTGGTCAAAATGGGGATAG 640
Query 588 ATCCAGTGACTCATAA-ACCCAAAAACGAGACTCCTTTA-TCTTCT-CTTGGTCTA-TCC 643
|||||||||| || || | | ||||||||||| | ||| ||| | | |||| | |||
Sbjct 641 ATCCAGTGACCCACAAGAAC-AAAAACGAGACAC-TTTCGTCTACCACA-GGTC-AGTCC 696
Query 644 AAGAACGCAGCTATACTTAGCCACACTG-CTCAATGGGAAAGTGCAAGGCTTGAAGCTGA 702
||||||||||| | ||||| || | || |||||||||| ||||| || || ||||||||
Sbjct 697 AAGAACGCAGCCACGCTTAGTCATA-TGGCTCAATGGGAGAGTGCTAGACTCGAAGCTGA 755
Query 703 AGCAAGACTAGCTAGAGAATCAAAGCTTCTTCATTTACAACATTACCAAACCAA-AACAT 761
|||||| ||||||||||||||||||||||| |||||||| |||||||||| ||| ||| |
Sbjct 756 AGCAAGGCTAGCTAGAGAATCAAAGCTTCTCCATTTACAGCATTACCAAAACAATAACCT 815
Query 762 CATC---TCAACCTCATCATCATCATGGATTCACTCACAAGTCATTGTTACCTAATTGGA 818
| | ||| | || ||| || ||| | |||||||| || ||| || |||||||
Sbjct 816 TAACAAATCAGC-TCCTCAACAACATTGCTTCACTCATAAAACATCA--ACA-AATTGGA 871
Query 819 C-AA-CAAAACCACACGAAGATC--A-A-CAACAGCTTGAATCTCCGACATCTAC-AGTG 871
| || | |||| | | ||| | | | | ||||||||||||||||||||||| || | ||
Sbjct 872 CTAAACCAAACGA-AGGAA-A-CGGAGATCAACAGCTTGAATCTCCGACATCGACGA-TG 927
Query 872 TCATTCTCTGAGA 884
||||||| ||||
Sbjct 928 ACATTCTCCGAGA 940
> Ahg484660 jgi|Araly1|484660|fgenesh2_kg.5__652__AT3G28910.1
Length=1465
Score = 139 bits (75), Expect = 5e-32
Identities = 259/343 (76%), Gaps = 31/343 (9%)
Strand=Plus/Plus
Query 239 TGTTGTGACAAATTG-GGTTTGAAGAAAGGACCTTGGACACCAGAGGAGGATCAGAAACT 297
|||||||||||| | || |||||||||| |||||||| || || || ||| | | |
Sbjct 284 TGTTGTGACAAA-GGAGGAGTGAAGAAAGGGCCTTGGACTCCTGAAGAAGAT-A-TCA-T 339
Query 298 TTTAG---CTTATATTGAAGAACATGGTCATGG-AAGTTGGCGTTCAT-TGCCTGA-GAA 351
||||| |||| || |||||||||||| ||| || |||| | | | | ||| | ||
Sbjct 340 TTTAGTTACTTACATCCAAGAACATGGTCCTGGTAA-TTGGAGAGC-TGTTCCT-ACCAA 396
Query 352 -AGCTGG--T-CTCCATCGATGCGGAAAGAGTTGTAGACTAAGATGGACTAACTACCTAA 407
| |||| | | | | ||||| | |||||||||||||| |||||||| ||||| |||
Sbjct 397 TA-CTGGTATGTTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAA 455
Query 408 GACC-TGACATCAAAAGAGGCAAATTCAACT-TACAAGAAGAACAA-ACCATTATCCAAC 464
| || || |||||||||||||| ||| ||| ||| |||||| || | ||| | || |
Sbjct 456 GGCCAGGA-ATCAAAAGAGGCAATTTC-ACTGAACATGAAGAA-AAGATGATTGTTCATC 512
Query 465 TCCATGCTCTGTTAGGAAACAGATGGTCAGCGATTGCTACTCAT-T-TGCCA-AAGAGAA 521
| || || || |||||||| |||||| | || ||||| |||| | | ||| || || |
Sbjct 513 TTCAAGCCCTCTTAGGAAATAGATGGGCTGCAATTGC--GTCATATCTTCCACAA-AGGA 569
Query 522 CAGACAACGAGATCAAGAACTATTGGAACACTCATTTGAAGAA 564
||||||| || || |||||||||||||||||||||||||||||
Sbjct 570 CAGACAATGACATTAAGAACTATTGGAACACTCATTTGAAGAA 612
> Ahg937505 jgi|Araly1|937505|scaffold_501696.1
Length=1043
Score = 111 bits (60), Expect = 1e-23
Identities = 263/357 (74%), Gaps = 30/357 (8%)
Strand=Plus/Plus
Query 224 ATGGGTAGATCACCGTGTTGTGACAA-ATTGGGTTTGAAGAAAGGACCTTGGACACCAGA 282
||||| ||| |||| || |||||||| ||| || |||||||||| || |||||||||||
Sbjct 23 ATGGGAAGACCACCATGCTGTGACAAGATT-GGAGTGAAGAAAGGGCCATGGACACCAGA 81
Query 283 GGAGGATCAGAAACTT--TTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTTCA 340
||| ||| | | ||| || |||| || |||||||||||| ||||| ||| | ||
Sbjct 82 GGAAGAT-ATCATCTTGGTT-TCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATC- 138
Query 341 T-TGCCTGA--GAAAGCTGGTCTCCA-TCGATG-CGGAAAGAGTTGTAGACTAAGATGGA 395
| ||||| | | | | ||| | | |||| | ||| ||||||||| | || ||||
Sbjct 139 TGTGCCT-ACTCATA-CAGGT-TTGAGGAGATGTAGCAAA-AGTTGTAGATTGAGGTGGA 194
Query 396 CTAACTACCTAAGACCTGACATCAAAAGAGGCAAA-TTCAACTTA-CAAGAAGAACAA-A 452
|||| || || |||||| || || | || ||| ||| || | || |||| | || |
Sbjct 195 CTAATTATCTTCGACCTGGGATTAAGCGTGG-AAATTTC-ACCGAGCATGAAG-AGAAGA 251
Query 453 CCATTATCCAACTCCATGCTCTGTTAGGAAACAGATGGTCAGCGATTGCTACTCAT---T 509
||| |||| || || ||||| || || ||||| ||| |||| || || | |||| |
Sbjct 252 TGATTCTCCATCTTCAAGCTCTTTTGGGCAACAGGTGGGCAGCTATAGC-A-TCATACCT 309
Query 510 TGCCA-AAGAGAACAGACAACGAGATCAAGAACTATTGGAACACTCATTTGAAGAAA 565
| ||| || || |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 310 T-CCAGAA-AGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAA 364
> Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1
Length=980
Score = 106 bits (57), Expect = 5e-22
Identities = 161/208 (77%), Gaps = 20/208 (10%)
Strand=Plus/Plus
Query 366 GATGCGGAAAGAGTTGTAGACTAAGATGGACT-AACTACCTAAGACCTGA-CATCAAAAG 423
|||| || |||||||||||| | ||||||| | || || |||||||| || | |||||||
Sbjct 226 GATGTGGTAAGAGTTGTAGATTGAGATGGA-TGAATTATCTAAGACCAGATC-TCAAAAG 283
Query 424 AGGCAAATTCAACTTACAAGAAGAACA--AAC-CATTATCCAA-CTCCAT-GCTCTG-TT 477
|||||| ||| || | |||||||| | ||| ||| || ||| |||||| ||| || ||
Sbjct 284 AGGCAATTTC-AC-T-GAAGAAGAAGATGAACTCATCAT-CAAGCTCCATAGCT-TGCTT 338
Query 478 AGGAAACAGATGGTCAGCGATTGCTACTCA-TTTGCCAAAG-AGAACAGACAACGAGATC 535
|| |||| |||||| || ||| | || || | | |||||||| |||||||||
Sbjct 339 -GGTAACAAATGGTCTTTAATAGCT-GGGAGATTACC-AGGAAGAACAGATAACGAGATC 395
Query 536 AAGAACTATTGGAACACTCATTTGAAGA 563
||||||||||||||||||||| | ||||
Sbjct 396 AAGAACTATTGGAACACTCATATCAAGA 423
> Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2
Length=1723
Score = 65.8 bits (35), Expect = 8e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 518 AGAACAGACAACGAGATCAAGAACTATTGGAACAC 552
|||||||||||||||||||||||||||||||||||
Sbjct 393 AGAACAGACAACGAGATCAAGAACTATTGGAACAC 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5