BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15320.1

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941018 jgi|Araly1|941018|scaffold_601562.1                        339    2e-92


> Ahg941018 jgi|Araly1|941018|scaffold_601562.1
Length=202

 Score =  339 bits (183),  Expect = 2e-92
 Identities = 196/202 (97%), Gaps = 1/202 (0%)
 Strand=Plus/Plus

Query  91   GACCAACA-GTGATTTGACAATGACGCTACCTCCAGGTCTTTACTCCGGCACCAGCTCTC  149
            |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1    GACCAACAGGTGATTTGACAATGACGCTACCTCCAGGACTTTACTCCGGCACCAGCTCTC  60

Query  150  TTGCTCTGGTGGCTCGTGCTTCGGCTTTTGGGTTGGGTCTCGTCTATGGGAACATGAAGC  209
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  61   TTGCTCTGGTGGCTCGTGCTTCGGCTTTTGGCTTGGGTCTCGTCTACGGGAACATGAAGC  120

Query  210  TCAAGGTCCTTAAGATCAAATCGATGTCACAGAAGAAGGTTGAAGCCACCGCTCATCATT  269
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  121  TCAAGGTCCTTAAGATCAAATCGATGTCACAGAAGACGGTTGAAGCCACCGCTCATCATT  180

Query  270  AAACCACTCTTCTTTCTTTACA  291
            ||||||||||||| ||||||||
Sbjct  181  AAACCACTCTTCTCTCTTTACA  202



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18429149487


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5