BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15330.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488382 jgi|Araly1|488382|fgenesh2_kg.6__1516__AT5G15330.1 1650 0.0
Ahg894647 jgi|Araly1|894647|Al_scaffold_0006_2643 196 3e-49
> Ahg488382 jgi|Araly1|488382|fgenesh2_kg.6__1516__AT5G15330.1
Length=1217
Score = 1650 bits (893), Expect = 0.0
Identities = 1141/1251 (91%), Gaps = 55/1251 (4%)
Strand=Plus/Plus
Query 23 ctctcGCGTTCGTTCTTATCCA--CGAGCTCTG---CACCGTCGCAATCTCCGTCTTCTC 77
|||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 1 CTCTCGCGTTCGTTCTTATCCAGGCCAGCTCTGCTTCACCGTCGCAATCTCCGTCTTCTC 60
Query 78 CATTTAGATCCAACACAGAGCCTTTTCTACATGAAATTCGGCAAAGAGTTTCGTACTCAC 137
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 61 CA-TTAGATCCAACACAGAGGCTCTTCTACATGAAATTCGGCAAAGAGTTTCGTACTCAC 119
Query 138 CTCGAAGAAACTTTACCAGAGTGGAGAGACAAGTTCCTTTGCTATAAACCTTTAAAAAAG 197
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 CTCGAAGAAACTTTACCTGAGTGGAGAGACAAGTTCCTTTGCTATAAACCTTTGAAAAAG 179
Query 198 CTTCTCAAATATTATCCTTATTACTCCGCCGATTTTGGACCCGCCAATTCCGATCACAAC 257
||||||||||||||||| ||||| | || ||| | | | | | | |
Sbjct 180 CTTCTCAAATATTATCC---TTACT----C----TT----CCG---A-T-C-A-C-C-TC 215
Query 258 GATTCGCGTCCAGTATTTGCTGATACTACTAACATCTCTTCCGCCGCCGACGACGGCGGT 317
|||| |||||| ||||| ||||| || ||||||||||| |||||||| |||||||||| |
Sbjct 216 GATTTGCGTCCCGTATTCGCTGACACCACTAACATCTCCTCCGCCGCAGACGACGGCGAT 275
Query 318 GTGGTTCCCGGCGTCAGGCCAT-CGGAAGATCTCCAGGGTTCGTTTGTGAGGATACTTAA 376
|||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 276 GTGGCTCCCGGCGTTAGGCC-TACGGAAGATCTCCAGGGTTCGTTTGTGAGGATACTTAA 334
Query 377 CGATGAACTTGAGAAGTTTAACGATTTTTACGTTGATAAGGAAGAAGATTTCGTTATCAG 436
||| |||||||| |||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 335 CGAGGAACTTGACAAGTTTAATGACTTTTACGTTGATAAAGAAGAAGATTTCGTTATCAG 394
Query 437 ATTACAGGAGCTCAAGGAAAGAATCGAGCAAGTT----A-AAG-A---AAAGAATGGGGA 487
|||||||||||| |||||| |||||||||||||| | ||| | ||||||||||||
Sbjct 395 ATTACAGGAGCTTAAGGAACGAATCGAGCAAGTTAAAGAGAAGAACGGAAAGAATGGGGA 454
Query 488 ATTTGCATCAGAAAGTGAGTTCAGCGAAGAAATGATGGATATTCGGAGAGACCTTGTTAC 547
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 455 CTTCGCATCAGAAAGCGAGTTCAGCGAAGAAATGATGGATATTCGCAGAGACCTTGTTAC 514
Query 548 CATTCATGGCGAGATGGTGCTCCTGAAAAACTACAGCTCCCTTAATTTTGCAGGACTTGT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CATTCATGGCGAGATGGTGCTCCTGAAAAACTACAGCTCCCTTAATTTTGCAGGACTTGT 574
Query 608 CAAGATTTTGAAGAAGTACGATAAAAGAACAGGTGGACTTTTACGTTTGCCTTTCACACA 667
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 575 CAAGATTTTGAAGAAGTACGATAAAAGAACAGGTGGACTTCTACGTCTGCCTTTCACACA 634
Query 668 GCTTGTTCTCCATCAACCCTTCTTTACTACAGAGCCACTTACTAGGTTAGTCCGTGAATG 727
|||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||| ||
Sbjct 635 GCTTGTTCTCCATCAACCTTTCTTTACAACAGAGCCCCTTACTAAGTTAGTCCGTGATTG 694
Query 728 TGAGGCCAATCTTGAGCTTCTTTTTCCTTCAGAAGCGGAAGTTGTAGAGTCTTCTAGCGC 787
||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||| |
Sbjct 695 TGAGGCCAATCTTGAGCTTCTCTTTCCTACAGAAGCAGAAGTTGTAGAGTCTTCCAGCAC 754
Query 788 AGTGCAAGCACACTCAAGCTCACATCAGCACAACTCCCCAAGAATCTCAGCTGAGACTTC 847
|||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 755 AGTGCACCCACACTCAAGCTCACATCATCACAACTCCCCAAGAATCTCAGCCGAGACTTC 814
Query 848 CTCAACTCTCGGCAATGAAAATCTTGATATATATAAGAGTACACTCGCTGCAATGAGAGC 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCAACTCTCGGCAATGAAAATCTTGATATATATAAGAGTACACTCGCTGCAATGAGAGC 874
Query 908 TATAAGAGGGTTACAAAAGGCTAGCTCGACGTACAACCCTTTATCATTCTCATCGCTTCT 967
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 875 TATAAGAGGGTTACAAAAGGCTAGCTCGACATACAACCCATTATCATTCTCATCGCTTCT 934
Query 968 TCAGAACGAGGATGATGAGACGGTAACAGCTGAAAACTCTCCAAACTCTGGGAACAAAGA 1027
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 935 TCAGAACGAGGATGATGAGACAGTAACAGCTGAAAACTCTCCAAACTCTGAGAACAAAGA 994
Query 1028 TGATTCAGAGAAGGAAGATACTGGACCTTCCCACTGATCAGAAGAGAATGA-TGCT-CT- 1084
||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 995 TGATTCAGAGAAGGAAGATACTGGACCTTCCCACTGATCAGAAGAGAATGAATGATGCTC 1054
Query 1085 -TTTTGATCAAGATTTTGAGAATTTGCTTCTTGATTTCACCCTAACTTTTCATAAAATTA 1143
|||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||
Sbjct 1055 CTTTTGATCAAGATTTTGAGATTTTGCTTCTTGATATCACCCTAACTTTTCATATA-TTA 1113
Query 1144 ACACATTTTACTTTACTTCTTCACCTTTTGCAG-GACACAACTTCTGTATGCATTTGAAT 1202
|||||||||||| | ||||||||||||||| | |||| |||||||||||||||||||
Sbjct 1114 ACACATTTTACT---C--CTTCACCTTTTGCAGAG-CACAGCTTCTGTATGCATTTGAAT 1167
Query 1203 TGTAGTACAGTCGTTTATAGATTTTCAATGAAA-TTTTCCTCCATTGTCTC 1252
||||||| ||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1168 TGTAGTATAGTCGTTCATAGATTTTCAATGAAAATTTTC-TCCATGGTCTC 1217
> Ahg894647 jgi|Araly1|894647|Al_scaffold_0006_2643
Length=375
Score = 196 bits (106), Expect = 3e-49
Identities = 128/137 (93%), Gaps = 7/137 (5%)
Strand=Plus/Minus
Query 23 ctctcGCGTTCGTTCTTATCC-A-CGAGCTCTG---CACCGTCGCAATCTCCGTCTTCTC 77
||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||
Sbjct 136 CTCTCGCGTTCGTTCTTATCCAAGCCAGCTCTGCTTCACCGTCGCAATCTCCGTCTTCTC 77
Query 78 CATTTAGATCCAACACAGA-GCCTTTTCTACATGAAATTCGGCAAAGAGTTTCGTACTCA 136
|| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 76 CA-TTAGATCCAACACAGAGGCTTTTTCTACATGAAATTCGGCAAAGAGTTTCGTACTCA 18
Query 137 CCTCGAAGAAACTTTAC 153
|||||||||||||||||
Sbjct 17 CCTCGAAGAAACTTTAC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5