BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15350.1
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941021 jgi|Araly1|941021|scaffold_601565.1 854 0.0
> Ahg941021 jgi|Araly1|941021|scaffold_601565.1
Length=579
Score = 854 bits (462), Expect = 0.0
Identities = 546/586 (93%), Gaps = 8/586 (1%)
Strand=Plus/Plus
Query 50 gagagagagagagagagtttagttagagagaaaaaaaTGGCGAGATTCACGGTGCTGATT 109
||||||||||||||||| || ||||||| ||||||| ||||||| |||||| |||||
Sbjct 1 GAGAGAGAGAGAGAGAG---AG--AGAGAGAGAAAAATGTCGAGATTGACGGTGTTGATT 55
Query 110 ACGGCGGTTGTGCTAGCTTTTCTAATGGCGGCGCCGATGCCAGG-AGTGACGGCCAAGAA 168
|||||||||||||||||||||| | |||||||||||||| || |||| |||| |||||
Sbjct 56 GTGGCGGTTGTGCTAGCTTTTCTAGTTGCGGCGCCGATGCC-GGAAGTGGCGGCGAAGAA 114
Query 169 GTATACAGTCGGCGAGAACAAGTTTTGGAACCCCAACATTAACTACACCATCTGGGCTCA 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GTATACAGTCGGCGAGAACAAGTTTTGGAACCCCAACATTAACTACACCATCTGGGCTCA 174
Query 229 GGGCAAGCATTTCTACCTCGGAGACTGGCTCTATTTCGTGTTCGACAGAAACCAGCACAA 288
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 175 GGGCAAGCATTTCTACCTTGGAGACTGGCTCTATTTCGTGTTCGACAGAAACCAACACAA 234
Query 289 TATTCTTGAAGTGAACAAGACTGACTATGAAGGATGTATCGCCGACCACCCAATACGCAA 348
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 235 CATTCTTGAAGTGAACAAGACTGACTATGAAGGCTGTATCGCCGACCACCCAATACGTAA 294
Query 349 CTGGACACGTGGAGCTGGGAGAGACATTGTCACTCTCAACCAGACCAAGCATTACTACCT 408
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 295 CTGGACACGTGGAGCTGGGAGAGACATTGTCACTCTCAACGAGACCAAACATTACTACCT 354
Query 409 TCTCGACGGAAAGGGTGGATGTTACGGTGGCATGAAGCTATCTGTTAAAGTAGAGAAGCT 468
||| || ||||||||||| || || || || ||||||||| ||||||| |||||||||||
Sbjct 355 TCTTGATGGAAAGGGTGGCTGCTATGGCGGTATGAAGCTAGCTGTTAAGGTAGAGAAGCT 414
Query 469 TCCTCCTCCACCAAAATCTGCACCTGTCAAGAACATTGGATCGGTTTCAATGGTCACAGG 528
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 415 TCCTCCTCCACCAAAATCTGCACCTGTCAAGAACATTGGATCAGTTTCAATGGTCACAGG 474
Query 529 TCTCGCTCAATTCATGATTCCGGTATCTCTATTCGCTTTCCCTGCAATGTGGGATGTGAT 588
|||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 475 TCTCGCTCAATTCATGGTTCCGGTATCTCTTTTCGCTTTCCCGGCAATGTGGGATGTGAT 534
Query 589 CTCAAGGATGTGGTAGTAGTCACCAGTCTTCAAAGTTCTTTAGTTG 634
||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 535 CTCAAGGATGTGGTAGTGGTGACCAGTCT-CAAAGTTCTTTAGTTG 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30650825268
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5