BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15380.1
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893447 jgi|Araly1|893447|Al_scaffold_0006_1443 2220 0.0
> Ahg893447 jgi|Araly1|893447|Al_scaffold_0006_1443
Length=1782
Score = 2220 bits (1202), Expect = 0.0
Identities = 1583/1763 (90%), Gaps = 42/1763 (2%)
Strand=Plus/Plus
Query 143 CAACCTCGCCAAACTCTATTCAAAATAGAATCTCCGATGAGACGGTGGCTAGCTTTGTCG 202
||||||||||||||| ||||||||| ||||||| |||||| |||| ||||| ||| | |
Sbjct 32 CAACCTCGCCAAACTTTATTCAAAAGGGAATCTCTGATGAGGCGGTTGCTAGTTTTATTG 91
Query 203 AGATGGGATTTTCAACTCAAATGATTGCTAGAGCAATTGAAGAAACCGCTGGAGCAAATA 262
||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 92 AGATGGGATTTTCAAGTGAAATGATAGCTAGAGCAATTGAAGAAACCGGTGGAGCAAAT- 150
Query 263 T-GGAACCTATGATGATTCTTGAAACTCTCTTTAACTATTCGGCAAGCACTGAAGCTAGT 321
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 151 TCGGAACCTAGGATGATTCTTGAAACTCTCTTTAACTATTCGGCAAGCACCGAAGCTAGT 210
Query 322 TCTTCGAAATCGAAAGTTATCAATCATTTTATTGCTATGGGGTTTCCTGAGGAACATGTG 381
||||| ||||| ||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 211 TCTTCAAAATCTAAAGTTATCGATCATTTTATTGGGATGGGGTTTCCTGAGGAAAATGTG 270
Query 382 ATAAAAGCTATGCAAGAACACGGAGATGAAGATGTGGGA-GAGATCACGAATGCACTTCT 440
||||||||||| |||||| ||||||||||| || | || ||||||||||||||||||||
Sbjct 271 ATAAAAGCTATACAAGAATACGGAGATGAAAATAT-TGATGAGATCACGAATGCACTTCT 329
Query 441 AACTTATGCGGAGGTTGACAAATTACGTGAATCAGAGGACATGAACATCAACATTAatga 500
|||||||||||||||||||| | || ||||| || ||||| |||||||||||| | |
Sbjct 330 AACTTATGCGGAGGTTGACAGACTAGGTGAAACAAAGGACGTGAACATCAACACT-A--C 386
Query 501 tgatgatgatgatAATCTCTATTCCTTGTCATCAGATGATGAAGAGGATGAACTAAACAA 560
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 387 TGATGATGATGATAATCTCTATTCCTTATCATCAGATGATGACGAGGATGAACTAAACAA 446
Query 561 CTCCT-CCAATGAAGATAGAATCTTGCAAGCGTTGATCAAAATGGGCTATTTGAGGGAAG 619
||||| |||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 447 CTCCTCCCAA-GAAGATAGTATCTTGCAAGCGTTGATCAAAATGGACTATTCGAGGGAAG 505
Query 620 ATGCTGCTATAGCTATAGAGAGATGTGGAGAAGATGCAAGTATGGAAGAGGTGGTAGACT 679
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 506 AGGCTGCTATAGCTATAGAGAGATGTGGAGAAGATGCAAGTGTGGAAGAGGTGGTAGACT 565
Query 680 TCATTTGTGCAGCTCAGATGGCACGGCAGTTCGATGAGATTTATGCAGAACCTGACAAGA 739
|||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| || |
Sbjct 566 TCATTTGTGCTGCTCAGATGGCACGGCAGTTCGATGAGTTTTTTGCAGAACCTGATAAAA 625
Query 740 AAGAGCTTATGAATAACAACaaaaaaaGGCGAACATACACTGAGACACC--------A-A 790
|||||| ||||||||||| |||||| ||||||||||||| |||| |||| | |
Sbjct 626 AAGAGCCTATGAATAACAGCAAAAAGAGGCGAACATACAATGAGCCACCGAGAAGAGAGA 685
Query 791 GAAAGCCGAACA----C---G-----GACCAGCTCATCTCTCTACCAAAAGAGATGATTG 838
|||||||||||| | | ||||||||||||| |||||| || ||||||||||
Sbjct 686 GAAAGCCGAACACTGCCATGGCCAATGACCAGCTCATCTATCTACCGAAGGAGATGATTG 745
Query 839 GGTTTGGTGTCCCTAATCA-TCCCGGACTTATGATGCACAGACCAGTCCCAATTCCGGAT 897
||||||||||||||||| | || |||||||||||| ||||| |||||||| ||||||||
Sbjct 746 GGTTTGGTGTCCCTAAT-AGACCTGGACTTATGATGAACAGAGCAGTCCCAGTTCCGGAT 804
Query 898 ATTGCTCGTGGCCCGCCCTTCTTTTACTATGAGAACGTTGCTATGACACCAAAAGGTGTT 957
|||||| |||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||
Sbjct 805 ATTGCTTGTGGCCCGCCCTTCTTCTACTACGAGAACGTTGCCATGGCACCAAAAGGTGTT 864
Query 958 TGGGCCAAGATCTCCAGCCACTTGTACGACATCGTTCCTGAATTCGTGGATTCAAAGCAT 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TGGGCCACGATCTCCAGCCACTTGTACGACATCGTTCCTGAATTCGTGGATTCAAAGCAT 924
Query 1018 TTTTGTGCCGCTGCAAGAAAGAGGGGGTATATCCATAATC-TGCCAATCCAGAATAGGTT 1076
|||||||||||||| |||||||| || ||||| || || | |||||||||||||||||||
Sbjct 925 TTTTGTGCCGCTGCGAGAAAGAGAGGATATATTCACAA-CTTGCCAATCCAGAATAGGTT 983
Query 1077 TCAGATTCAACCTCCACAACACAATACCATCCAAGAAGCCTTTCCATTGACCAAGCGATG 1136
|||||||| ||||||| |||||||| |||||||||||||| || || |||||||||||
Sbjct 984 CCAGATTCAGCCTCCACCGCACAATACAATCCAAGAAGCCTTACCCTTAACCAAGCGATG 1043
Query 1137 GTGGCCTAGTTGGGATGGGAGAACGAAGTTGAATTGTCTGTTGACTTGTATTGCCAGTTC 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1044 GTGGCCTAGTTGGGATGGGAGAACGAAGTTGAATTGTCTGTTGACTTGTATTGCCAGTGC 1103
Query 1197 T-AGACTCACAGAA-AAAATACGCGAAGCTCTTGAGAGATATGATGGAGAGACACCTCTA 1254
| || |||||| || | ||||||||| |||||||||| ||||||||||||| |||||| |
Sbjct 1104 TAAG-CTCACA-AACAGAATACGCGAGGCTCTTGAGAAATATGATGGAGAGCCACCTCAA 1161
Query 1255 GATGTTCAAAAATGGGTTATGTATGAATGCAAAAAGTGGAATTTGGTTTGGGTAGGTAAA 1314
|||| || ||| || ||||| |||||||||| |||||||||||||||||||||||
Sbjct 1162 CATGTGCAGAAACAAGTCATGTACCAATGCAAAAAATGGAATTTGGTTTGGGTAGGTAAG 1221
Query 1315 AACAAGCTTGCCCCGCTGGACG-CAGATGAGATGGAAAAGCTTTTAGGCTTCCCGAGAGA 1373
|||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||
Sbjct 1222 AACAAGCTTGCCCCGCTGGA-GCCAGATGAGATGGAGAAGCTTCTAGGCTTCCCGAGAGA 1280
Query 1374 TCATACTCGAGGAGGAGGTATCAGCACAACTGATCGCTACAAGTCTTTAGGGAACTCGTT 1433
||||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 1281 CCATACTCGAGGTGGAGGAATCAGCAGAACTGACCGCTACAAGTCTTTAGGCAACTCGTT 1340
Query 1434 TCAGGTTGATACAGTTGCTTATCACTTGTCTGTGCTTAAGCCTCTGTTCCCAAATGGAAT 1493
|||||||||||| ||||| |||||||||||||| ||||||||| |||| || ||||||||
Sbjct 1341 TCAGGTTGATACTGTTGCGTATCACTTGTCTGTCCTTAAGCCTTTGTTTCCGAATGGAAT 1400
Query 1494 CAACGTCCTGTCACTCTTCACGGGCATTGGTGGTGGAGAAGTTGCACTCCATCGACTCCA 1553
|| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1401 AAAGGTTCTGTCACTCTTCACGGGGATTGGTGGTGGAGAAGTTGCACTCCATCGTCTCCA 1460
Query 1554 AATTAAGATGAATGTTGTTGTGTCTGTGGAGATTTCAGATGCGAACAGAAACATATTGAG 1613
|||| | ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1461 AATTCGGCTGAATGTAGTTGTGTCTGTTGAGATTTCAGAAGCGAACAGAAACATATTGAG 1520
Query 1614 AAGCTTTTGGGAGCAGACGAATCAAAAGGGTATCCTGAGAGAGTTTAAAGATGTTCAAAA 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1521 AAGCTTTTGGGAGCAGACGAATCAAAAGGGTATCCTGAGAGAGTTTAAAGATGTTGAAAA 1580
Query 1674 GCTAGACGACAATACGATTGAGCGGCTTATGGACGAGTACGGAGGATTCGACTTAGTCAT 1733
||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1581 GCTAGACGACAATACGATTGAGCAGCTTATGGACGAGTACGGAGGATTCGATTTGGTCAT 1640
Query 1734 AGGAGGAAGTCCGTGTAACAATCTTGCCGGAGGCAATCGCCATCA-TCGGGTCGGTCTTG 1792
||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||
Sbjct 1641 TGGAGGAAGTCCGTGTAACAATCTCGCCGGAGGGAATCGCCAT-AGTCGGGTCGGTCTTG 1699
Query 1793 GAGGAGAGCACTCGTCACTCTTCTTCGACTATTGTAGGATTCTCGAGGCTGTTCGTCGCA 1852
|||||||||||| ||||||||||| || || ||| ||||||||||| | ||| ||||||
Sbjct 1700 AAGGAGAGCACTCCTCACTCTTCTTTGATTACTGTCGGATTCTCGAGACAGTTGGTCGCA 1759
Query 1853 AAGCACGACATATGAGGAGATGA 1875
||||| |||| ||||||||||||
Sbjct 1760 AAGCAAGACAAATGAGGAGATGA 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5