BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15390.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488385 jgi|Araly1|488385|fgenesh2_kg.6__1519__AT5G15390.1 1823 0.0
> Ahg488385 jgi|Araly1|488385|fgenesh2_kg.6__1519__AT5G15390.1
Length=1254
Score = 1823 bits (987), Expect = 0.0
Identities = 1185/1275 (93%), Gaps = 35/1275 (3%)
Strand=Plus/Plus
Query 3 GTTCGAGACGACGACAAGAGACAAGCTCTGTCTGTGGTCGGGAAATCGAAACCAGAGCCT 62
||||||||||||||||||||||||| | | ||||||| |||||||||||||||||||
Sbjct 1 GTTCGAGACGACGACAAGAGACAAG--C-G---GTGGTCGTGAAATCGAAACCAGAGCCT 54
Query 63 TGGACTGTGTCTCTGCTCTGTGGAGT-A----TCCATTTTCGATTTCTTGAAGGTGAATC 117
|||| |||||||||||||||| || | | |||||||||||| | |||||| ||||||
Sbjct 55 TGGAGTGTGTCTCTGCTCTGT-GATTCACTTGTCCATTTTCGATCT-TTGAAGCTGAATC 112
Query 118 CAGCGAATCCT-TAATCTCAAGCTCCG--A-GACTGTGCAATAAACAAAACAGTAGCTAG 173
||||| |||| | ||||||||||||| | |||||||||||||| || || |||
Sbjct 113 TAGCGATTCCTCT-ATCTCAAGCTCCGACACTACTGTGCAATAAAC---AC---AG-TAG 164
Query 174 CAGCAGCAGCAACACATGAACTCGTGCAAATCCCTTATCCGTGCCTCAATCTCTTCCTTT 233
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 165 CAGCAGCAGCAACACATGAACTCGTGCAAATCCATTATCCGTGCCTCAATCTCTTCATTT 224
Query 234 CCATTTGTTCCTCTTCCAAACCCTAATTTCTCTATCACCTTCATC-T-CC-GTTCGCGCC 290
||||| |||||||||||||||||||||| |||||||||||| ||| | || ||||||| |
Sbjct 225 CCATTCGTTCCTCTTCCAAACCCTAATTCCTCTATCACCTTTATCATCCCAGTTCGCG-C 283
Query 291 TTTT-CTCCTCTCTCTGTCCTTCATCCAAATTCATCATGTATTGTAACAGCTCGACGCAC 349
|||| |||||||||| ||||| ||||||||| ||||||| |||| |||||||||||||||
Sbjct 284 TTTTCCTCCTCTCTCCGTCCTCCATCCAAATCCATCATGCATTGGAACAGCTCGACGCAC 343
Query 350 ATTTCATGGAGCTGTGGCTCTTTCACCGGAGAGCTTAACGGAAGAGTCTCCCAAGGATAC 409
||||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 344 ATTTCATGGAGTTGCGGCTCTTTCACCGGAAAGCTTAACGGAAGATTCTCCCAAGGATAC 403
Query 410 TGTGAAAGGA-TTGTTAACAACCAATCGTGGTGAGGCCTCAAGCTTGATGAAGATGGAGC 468
||| ||||| ||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 404 TGT-CAAGGACTTGCTAACAACCAATCGTGGCGACGCGTCAAGCTTGATGAAGATGGAGC 462
Query 469 GGAGGTGTAGCTTAAGCAATGGTGAGGGTGATTGTAGAGGATCTTGGTTTCCTTACGAGG 528
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 463 GGAGGTGTACCTTAAGCGATGGTGAAGGTGATTGTAGAGGATCTTGGTTTCCTTACGAGG 522
Query 529 ATAGGTTCAGGTGTGGTGAGGTGCATCTTAGTAGCCGTGAGGTGTTGGAGGCGGTGAGTC 588
||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 523 ATAGGTTCAGGTGTGGTGAAGTGTATCTTTGTAGCCGTGAGGTGTTGGAGGCGGTGACTC 582
Query 589 CTCATATGATGGAAGAGAGGACAGATAGGTTCAGGCGTGTGGTGGAGAATCGAAGCTACT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 583 CTCATATGATGGAAGAGAGGACAGATAGGTTCAGGCGTGTGGTGGAGAATCGAAGCTTCT 642
Query 649 CGGTGTGTCTTGTGGTTGAAGGTCTCTCTGATTTTGGAAACATCTCTGCTGCTTTCCGCT 708
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 643 CCGTGTGTCTTGTGGTTGAAGGTCTCTCTGATTTTGGAAACATTTCTGCTGCTTTCCGCT 702
Query 709 CAGCTGATGCGTTGGGGATTCAATCTGTACATGTTGTTTCCTGTGACAGCTCCAAAAGGT 768
| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CGGCGGATGCCTTAGGGATTCAATCTGTACATGTTGTTTCCTGTGACAGCTCCAAAAGGT 762
Query 769 ATAACGGAAATCGCCATGTGAGTATGGGAGCTGAGAAATGGCTGGACATTGAGTTTTGGG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATAACGGAAATCGCCATGTGAGTATGGGAGCTGAGAAATGGCTGGACATTGAGTTTTGGG 822
Query 829 ACACACCTAAAGAATGTTTCAAAGTTTTGAAGTCTCGCGGTTACAGAATAGCTACAACTC 888
|||||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||||
Sbjct 823 ACACACCTAAAGAATGTTTCGAAGTTCTGAAGTCTCGAGGTTACAGAATTGCCACAACTC 882
Query 889 ATTTGGGAATGGACACGGTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 ATTTGGGAATGGACACGGTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAG 942
Query 949 TTGTTGGAAACGAGGGCAGGGGAATAAGTGACGAAGCGTTGGAGTTATCAGATCTGCGTT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TTGTTGGAAACGAGGGCAGGGGAATAAGTGACGAAGCGTTGGAGTTATCAGATCTGCGTT 1002
Query 1009 GCAGTATTCCGATGAATGGAATGGTTGATTCGTTTAATGTCTCAGTGGCTGCAGGGATTC 1068
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1003 GCAGTATTCCGATGAATGGAATGGTTGATTCGTTCAATGTCTCAGTGGCTGCAGGGATTC 1062
Query 1069 TGATGCACCACGCAGTCTCTGATAGAACCACTCGTCTGGGAAGCCATGGAGATCTGTCGG 1128
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1063 TGATGCACCACGCAGTCTCTGACAGAACCACTCGTCTGGGAAGTCATGGAGATCTGTCGG 1122
Query 1129 AAGCAGAGAAAGAGATATTGATGGCTGAGTTCTCACTTCGTCACAGTAGAAGCTCAATTT 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 AAGCAGAGAAAGAGATATTGATGGCTGAGTTCTCACTTCGTCACAGTAGAAGCTCAATTA 1182
Query 1189 GCATTGCTTACGAGTTCGCTAAACGTAAACAACAACACTCTACCTCCTCCTAATTTTGAA 1248
|||||||||||||||||||||||||||||||||| | || | | |||| |||||||||||
Sbjct 1183 GCATTGCTTACGAGTTCGCTAAACGTAAACAACA-CTCT-T-CTTCCTTCTAATTTTGAA 1239
Query 1249 ACCGTTGTCTTATTC 1263
|| ||| ||||||||
Sbjct 1240 ACAGTTCTCTTATTC 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5