BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15410.1
Length=2453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488387 jgi|Araly1|488387|fgenesh2_kg.6__1521__AT5G15410.1 3727 0.0
Ahg952388 jgi|Araly1|952388|scaffold_66800001.1 152 1e-35
Ahg926590 jgi|Araly1|926590|scaffold_202151.1 152 1e-35
Ahg951997 jgi|Araly1|951997|scaffold_28700001.1 148 1e-34
> Ahg488387 jgi|Araly1|488387|fgenesh2_kg.6__1521__AT5G15410.1
Length=2356
Score = 3727 bits (2018), Expect = 0.0
Identities = 2227/2328 (96%), Gaps = 14/2328 (1%)
Strand=Plus/Plus
Query 54 ctctcccaatcactccctgcaaattttcttctctccctctcCCATGGTGGTTCCTCTATT 113
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 38 CTCT-CCAATCACTCCCTGCAAA--ATCTTCTCTCCCTCTCCCATGGTGGTTCCTCTGTT 94
Query 114 TCAATCATGCCCTCTCACCCCAACTTCATCTTCAGGTGGATTGGACTGTTTTCCGATAAG 173
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 95 TCAATCATGCCCTCTCACCCCAACTTCATCTTCAGGTGGATTGGAATGTTTTCCGAGAAA 154
Query 174 TTCCGTCGACAAACGACTGGGATCGATGAAAACAGTAACCTCCAAATCAACGGTGGAGAT 233
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 155 TTCCGTCGACAAACGACTGGAATCGATGAAAACAGTATTCTCCAAATCAACGGTGGAGAT 214
Query 234 TCGAGCAGCAGCGGCAGCGATGAGACGCCGGTGCTAAGCTCCGTCGAGTGTTACGCTTGC 293
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 215 TCGAGCAGCAGCGGCAGCGATGAGACGCCGGTGCTAAGTTCCGTCGAGTGTTACGCCTGC 274
Query 294 ACACAAGTAGGCGTCCCAGCTTTCCATTCAACTAGCTGCGATCAAGCTCACGCGCCGGAG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 ACACAAGTAGGCGTCCCAGCTTTCCATTCAACTAGCTGCGATCAAGCTCACGCGCCGGAG 334
Query 354 TGGCGTGCCTCCGCCGGCTCTT-CTCTAGTTCCGATCCAGGAAGGATCTGTCCCTAACCC 412
|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 335 TGGCGTGCCTCCGCCGGCTCTTCCT-TAGTTCCGATCCAGGAAGGATCCGTCCCTAACCC 393
Query 413 AGCCCGAACCAGATTCCGACGTCTCAAAGGTCCGTTTGGTGAAGTTCTCGATCCTAGGAG 472
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 394 AGCCCGAACCCGATTCCGACGTCTCAAAGGTCCGTTCGGTGAAGTTCTCGATCCCAGGAG 453
Query 473 CAAGCGCGTGCAGAGATGGAACCGCGCGTTGCTTTTAGCTCGTGGGATGGCTTTAGCGGT 532
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 454 CAAGCGCGTGCAGAGATGGAACCGCGCGTTGCTTCTAGCTCGCGGGATGGCTTTAGCTGT 513
Query 533 GGATCCGCTCTTCTTCTACGCGCTTTCCATCGGCCGAACTACCGGACCGGCGTGTCTTTA 592
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 514 GGATCCGCTCTTCTTCTACGCGCTTTCCATCGGCCGAACCACCGGACCGGCGTGTCTTTA 573
Query 593 CATGGATGGTGCGTTCGCCGCGGTGGTCACGGTGCTCCGCACGTGTCTCGATGCTGTTCA 652
|||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 574 CATGGACGGTGCCTTCGCCGCGGTGGTAACGGTGCTCCGCACGTGTCTCGACGCTGTTCA 633
Query 653 TCTTTGGCACGTGTGGCTTCAATTCAGACTGGCCTACGTCTCGAGAGAGTCGCTTGTCGT 712
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 634 TCTTTGGCACGTGTGGCTTCAATTCAGATTGGCTTACGTCTCGAGAGAGTCGCTTGTCGT 693
Query 713 TGGTTGTGGGAAGCTCGTTTGGGATCCACGCGCCATCGCGTCTCACTACGCACGCTCTCT 772
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TGGTTGTGGCAAGCTCGTTTGGGATCCACGCGCCATCGCGTCTCACTACGCACGCTCTCT 753
Query 773 CACTGGCTTCTGGTTTGATGTTATCGTCATCCTCCCTGTCCCTCAGGCAGTGTTTTGGTT 832
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 754 CACTGGCTTCTGGTTTGATGTTATCGTCATCCTCCCTGTTCCTCAGGCGGTGTTTTGGTT 813
Query 833 AGTTGTGCCGAAACTGATAAGAGAAGAGAAGGTTAAGCTGATAATGACGATTC-TGCTGC 891
||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 814 AGTTGTGCCGAAACTGATAAGAGAAGAGAAGATTAAGCTGATAATGACGATTCTTG-TGC 872
Query 892 TAATATTCTTGTTCCAGTTCCTCCCCAAGATTTATCACTGCATCTGTTTGATGAGAAGGA 951
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 873 TAATATTCTTGTTCCAGTTCCTCCCCAAGATTTATCACTGCATCTGCTTGATGAGAAGGA 932
Query 952 TGCAGAAGGTCACTGGTTACATTTTTGGAACTATTTGGTGGGGTTTTGCTCTTAATCTCA 1011
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 933 TGCAAAAGGTCACTGGTTACATTTTTGGGACTATTTGGTGGGGTTTTGCTCTTAATCTCA 992
Query 1012 TCGCATATTTCATCGCTTCTCATGTTGCTGGGGGATGTTGGTATGTTCTCGCAATACAGC 1071
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 993 TTGCATATTTCATCGCTTCTCATGTCGCTGGGGGATGTTGGTATGTTCTCGCAATACAGC 1052
Query 1072 GTGTTGCTTCTTGCATAAGACAACAATGTATGAGAACCGGGAACTGCAATCTGAGTCTGG 1131
|||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||
Sbjct 1053 GTGTTGCTTCTTGCATAAGACAGCAATGCATGAGAACCGGGGATTGCAATCTGAGTCTGG 1112
Query 1132 CTTGCAAAGAAGAGGTCTGTTACCAATTTGTGTCACCGACAAGCACAGTTGGATATCCAT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CTTGCAAAGAAGAGGTCTGTTACCAATTTGTGTCACCGACAAGCACAGTTGGATATCCAT 1172
Query 1192 GCTTATCTGGAAACCTTACCAGTGTGGTCAATAAGCCTATGTGCTTAGACTCTAACGGAC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GCTTATCTGGAAACCTTACCAGTGTGGTCAATAAGCCTATGTGCTTAGACTCTAACGGAC 1232
Query 1252 CATTCCGATATGGTATCTACCGTTGGGCACTTCCAGTCATCTCCAGCAACTCTCTTGCGG 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 CATTCCGATATGGTATCTACCGTTGGGCACTTCCAGTCATCTCCAGCAACTCTCTTGCGG 1292
Query 1312 TTAAGATCCTTTACCCCATCTTCTGGGGCCTAATGACTCTCAGCACATTTGCGAATGATC 1371
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1293 TTAAGATCCTTTACCCCATCTTCTGGGGCCTAATGACTCTCAGCACATTCGCAAATGATC 1352
Query 1372 TTGAGCCCACAAGCAACTGGCTCGAGGTTATTTTCAGTATAGTTATGGTTCTAAGTGGCT 1431
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1353 TTGAGCCCACAAGCAACTGGCTCGAGGTTATTTTCAGTATAGTTATGGTCCTAAGCGGGT 1412
Query 1432 TGTTACTTTTCACGCTGTTGATAGGAAACATTCAGGTGTTTTTGCATGCGGTAATGGCGa 1491
| ||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 1413 TATTACTCTTCACGCTATTAATCGGAAACATTCAGGTGTTTTTGCAAGCGGTAATGGCGA 1472
Query 1492 aaaaaaGGAAAATGCAGATACGGTGTAGGGATATGGAATGGTGGATGAAACGTAGGCAGT 1551
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1473 AAAAAAGGAAAATGCAGATAAGGTGTAGGGATATGGAATGGTGGATGAAACGTAGGCAGT 1532
Query 1552 TACCTTCCCGGTTAAGACAGAGGGTTAGGCGATTTGAGCGGCAGAGATGGAATGCCTTGG 1611
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1533 TACCTTCCCGGTTAAGACAGAGGGTTAGGCGATTTGAGCGTCAGAGATGGAATGCCTTGG 1592
Query 1612 GTGGTGAAGACGAGCTAGAACTTATACATGATTTGCCTCCGGGTCTTCGAAGAGATATCA 1671
|||| ||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 1593 GTGGAGAAGATGAGCTAGAACTTGTACAAGATTTACCTCCGGGTCTTCGAAGAGATATCA 1652
Query 1672 AACGATATCTTTGCTTTGATCTCATTAACAAGGTGCCATTGTTCAGGGGCATGGACGACT 1731
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1653 AACGATATCTTTGCTTTGATCTCATTAACAAGGTGCCACTGTTCAGGGGCATGGACGACT 1712
Query 1732 TGATCCTCGACAACATTTGCGATCGGGCTAAGCCTCGAGTCTTCTCTAAAGACGAAAAGA 1791
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1713 TGATCCTCGACAACATTTGCGATCGGGCTAAGCCTCGCGTCTTCTCTAAAGACGAAAAGA 1772
Query 1792 TCATCCGTGAAGGAGATCCTGTACAGAGAATGATATTCATCATGCGTGGACGAGTCAAAC 1851
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1773 TCATTCGTGAAGGAGATCCTGTACAGAGAATGATATTCATCATGCGTGGGCGAGTTAAAC 1832
Query 1852 GTATACAGAGCCTAAGCAAAGGCGTCCTAGCCACTAGTACACTAGAACCAGGCGGTTACT 1911
|||| |||||||||||||||||||| ||||||||||||| || |||||||| |||||||
Sbjct 1833 GTATCCAGAGCCTAAGCAAAGGCGTGATAGCCACTAGTACCCTCGAACCAGGGGGTTACT 1892
Query 1912 TGGGCGACGAGCTACTCTCATGGTGCCTACGTCGCCCGTTTCTGGACCGTCTTCCCCCTT 1971
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1893 TGGGTGACGAGCTACTCTCGTGGTGCCTACGTCGCCCGTTTCTGGACCGTCTACCCCCTT 1952
Query 1972 CCTCAGCAACATTTGTCTGCCTAGAAAACATCGAGGCATTCTCCCTCGGATCCGAAGATC 2031
| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1953 CGTCAGCAACATTTGTCTGCCTAGACAACATCGAGGCATTCTCCCTCGGATGCGAAGATC 2012
Query 2032 TTAGGTACATTACCGATCATTTCCGTTATAAATTCGCGAACGAGCGGCTTAAGCGGACCG 2091
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2013 TTAGGTACATTACCGACCATTTCCGTTATAAATTCGCAAACGAGCGGCTCAAGCGGACCG 2072
Query 2092 CAAGATACTATTCCTCAAACTGGAGGACGTGGGCAGCGGTAAATATTCAGATGGCGTGGC 2151
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 2073 CAAGATACTATTCCTCAAATTGGAGGACGTGGGCAGCCGTGAATATTCAGATGGCGTGGC 2132
Query 2152 GCCGGCGTAGGAAAAGAACCCGTGGTGAAAACATCGGCGGTTCGATGAGTCCTGTGTCGG 2211
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 GCCGATGTAGGAAAAGAACCCGTGGTGAAAACATCGGCGGTTCGATGAGTCCTGTGTCGG 2192
Query 2212 AGAATAGCATTGAAGGTAACAGTGAACGCCGGTTACTTCAGTATGCAGCTATGTTCATGT 2271
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2193 AGAATAGCGTTGAAGGTAACAGTGAACGCCGGTTACTTCAGTATGCGGCTATGTTCATGT 2252
Query 2272 CCATTCGACCGCATGATCATCTCGAATAATAATAAA-AAGTTCCAATTTTATATCGGTCC 2330
|||||||||| ||||||||||||||||||||| ||| |||||||||| || |||||||||
Sbjct 2253 CCATTCGACCTCATGATCATCTCGAATAATAAAAAAGAAGTTCCAATATT-TATCGGTCC 2311
Query 2331 AAATAATTGTGTGTTC--ATTGTTCCTCCTCAATTGTTTACCTTTACT 2376
|||| | || ||||| ||||||| ||||||||||||||||||||||
Sbjct 2312 AAAT--T-GTTTGTTCCCATTGTTCATCCTCAATTGTTTACCTTTACT 2356
> Ahg952388 jgi|Araly1|952388|scaffold_66800001.1
Length=293
Score = 152 bits (82), Expect = 1e-35
Identities = 105/116 (91%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 657 TGG-CACGTGTGGCTTCAATTCAGACTGGCCTACGTCTCGAGAGAGTCGCTTGTCGTTGG 715
||| ||| ||| ||||||||| ||| |||| |||||||| |||| ||||||||||||||
Sbjct 44 TGGTCACATGTAGCTTCAATTTAGATTGGCTTACGTCTCCCGAGATTCGCTTGTCGTTGG 103
Query 716 TTGTGGGAAGCTCGTTTGGGATCCACGCGCCATCGCGTCTCACTACGCACGCTCTC 771
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 104 TTGTGGCAAGCTCGTTTGGGATCCACACGCCATCGCGTCTCACTACGCACGCTCTC 159
> Ahg926590 jgi|Araly1|926590|scaffold_202151.1
Length=293
Score = 152 bits (82), Expect = 1e-35
Identities = 105/116 (91%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 657 TGG-CACGTGTGGCTTCAATTCAGACTGGCCTACGTCTCGAGAGAGTCGCTTGTCGTTGG 715
||| ||| ||| ||||||||| ||| |||| |||||||| |||| ||||||||||||||
Sbjct 44 TGGTCACATGTAGCTTCAATTTAGATTGGCTTACGTCTCCCGAGATTCGCTTGTCGTTGG 103
Query 716 TTGTGGGAAGCTCGTTTGGGATCCACGCGCCATCGCGTCTCACTACGCACGCTCTC 771
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 104 TTGTGGCAAGCTCGTTTGGGATCCACACGCCATCGCGTCTCACTACGCACGCTCTC 159
> Ahg951997 jgi|Araly1|951997|scaffold_28700001.1
Length=366
Score = 148 bits (80), Expect = 1e-34
Identities = 211/268 (79%), Gaps = 33/268 (12%)
Strand=Plus/Plus
Query 501 TTGCTTTTAGCTCGTGGGATGGCTTTAGCGGTGGATCCGCTCTTCTTCTACGCGCTTTCC 560
|||||| || |||| |||||||||||||||||||||| ||||||||||||| | || ||
Sbjct 5 TTGCTTCTAACTCGAGGGATGGCTTTAGCGGTGGATCTGCTCTTCTTCTACACACTCTCT 64
Query 561 ATCGGCCGAACTACCGGACCGGCGTGTCTTTACATGGATGGTGCGTTCGCCGCGGTGGTC 620
||||| ||||| |||||||| |||||||| ||||||| ||||| || ||| ||
Sbjct 65 ATCGGTCGAACCACCGGACCAACGTGTCTTCACATGGACGGTGCATT---CGC---GG-- 116
Query 621 ACGGTGCTCCGCACGTGTCTCGATGCTGTTCATCTTTGGCACGTGTGGCTTCAATTCAGA 680
||||| | ||| || | | || |||| || ||| ||||||||||| |
Sbjct 117 -CGGTGGT---CACATG--T-G--GC--TTCA--ATT--CACATGTGGCTTCAA-T---- 156
Query 681 CTGGCCTACGTCTCGAGAGAGTCGCTTGTCGTTGGTTGTGGGAAGCTCGTTTGGGATCCA 740
| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 157 -T----TACGTCTCCCGAGATTCGCTTGTCGTTGGTTGTGGCAAGCTCGTTTGGGATCCA 211
Query 741 CGCGCCATCGCGTCTCACTACGCACGCT 768
||||||||||||||| ||||||||||||
Sbjct 212 CGCGCCATCGCGTCTTACTACGCACGCT 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92445024615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5