BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15430.1
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488388 jgi|Araly1|488388|fgenesh2_kg.6__1522__AT5G15430.1 2248 0.0
> Ahg488388 jgi|Araly1|488388|fgenesh2_kg.6__1522__AT5G15430.1
Length=1794
Score = 2248 bits (1217), Expect = 0.0
Identities = 1577/1744 (90%), Gaps = 51/1744 (3%)
Strand=Plus/Plus
Query 150 TTTGAT-TGATTAATGTGCATCATATTCGTAATGTT-T-AGCTACAATGGTTTTTC-TCA 205
||| || ||||||||||||| |||| | || | || | || | ||| || | ||| |||
Sbjct 70 TTTAATCTGATTAATGTGCAACATAATGGT-TTCTTCTCAGGT-CAA-GGATCTTCATCA 126
Query 206 AAAGGATAGAGTTTTATGATTCCTGAATCAAGCATTCTCTAACTTTCTTTGTTATT-AAC 264
||||| |||||||||||||||||||||||||||||||||| | |||| ||||| || |||
Sbjct 127 AAAGGTTAGAGTTTTATGATTCCTGAATCAAGCATTCTCTTATTTTCGTTGTTCTTAAAC 186
Query 265 ATTTTTGTAGTTATTGAA------TCTCTCTCTGGCT-GA-TTGATTAATGGCTGAGGAG 316
| ||||||||| ||||| ||||||||| ||| | ||||||||||||||||||
Sbjct 187 A--TTTGTAGTTCTTGAATCTCTCTCTCTCTCTCGCTCTAGCTGATTAATGGCTGAGGAG 244
Query 317 ACCGTACGTTTGCCTAATTCGCCGGATGTAAACATATCATGGAGAAGGATTTCTACTGGA 376
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 245 ACCGTACGTTTGCCTAATTCACCGAATGTAAACAGATCATGGAGAAGGATTTCTACTGGA 304
Query 377 AAACTGAGTTTTTTATACACTCAAGAGAAAGTTGTTCCTAATTATCTCAGATCTCCCACT 436
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 305 AAACTGAGTTTTTTATACACTGAAGAGAAAGTTCTTCCTAATTATCTCAGATCTCCCACT 364
Query 437 GGTTCTTGTCATGATGCTTGTAAATACGGAAGGAAAGATGAATCTGAAGACAAGCCAAGA 496
||||||||||||||||| || ||||| ||||||||| ||||||||||||| ||||||| |
Sbjct 365 GGTTCTTGTCATGATGCCTGCAAATATGGAAGGAAACATGAATCTGAAGATAAGCCAAAA 424
Query 497 GTTCCACATCGCAAAAGGGTTAGCAGAAGCTTTTCTGGAGCTATAAACTTGGATTCACCA 556
|||||||||||||||||||||| |||||||||||||||| || | || |||||||||||
Sbjct 425 GTTCCACATCGCAAAAGGGTTAACAGAAGCTTTTCTGGAACTCTGAATTTGGATTCACCT 484
Query 557 CTGAGGAAGAAGGCATTGACAAAACCGCTGTTGAGTCCTTC-------TC--GTAGATGT 607
||||||||||||||||||| |||||| |||||| |||||| || ||| || |
Sbjct 485 TTGAGGAAGAAGGCATTGACCAAACCGGTGTTGAATCCTTCTTTTGGTTCTGGTAAATAT 544
Query 608 GATTCTGTTGGTGGCTTTGATCATGCGAAGAGCCAAGTTAGAAACTTTTCTAGCGGAGTT 667
|||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 545 GATTCTGTTGGTGGCTCTGATCATGCGAATAGCGAAGTTAGAAACTTTTCTAGCGGAGTT 604
Query 668 TGTGATGTTAAGAAGAGTCATGCAGATGGAACAAATGAAAAGGTAGTGTCTGTTTCTGAA 727
|||||||||||||||| |||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 605 TGTGATGTTAAGAAGAATCATGCAGATAGAACAAATAAAAAGGTAGTGCCTTTTTCTGAA 664
Query 728 TCT-AGGTTAGCTGATTCGACTAAGCg--a-aagaagaagaagaagaagaCGGTCTATGT 783
||| | ||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 665 TCTCA-GTTAGCTGACTCGACTAAGCGAAAGAAGAAGAAGAAGAAGAAGACGGTCTATGT 723
Query 784 GTCTCGCGGAAGGGCTAAAGAGATTGTTGAACAAAAGAGGCGTGTCACTGCTTTAAAGCT 843
|||||| ||||| |||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 724 GTCTCGTGGAAGAGCTAAAGAGATTGTTGAACATAACAGGCGTGTCACTGCTTTGAAGCT 783
Query 844 GAAAGCTGTTGCACAAACTGCAGAGATTGCTCTTCGGCGTAGTACTGTGAAGAGAAAGAA 903
|||| |||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct 784 GAAATCTGTTGCACAAACTGCAGCGATAGCTCTACGGCGAAGTACTGTGAAGAGAAAGAA 843
Query 904 GATGAATGGCGGATCAAAAGCTGCAGAACAAAAGAAGGCAGTTATGGCTTTAAGAAGAGC 963
|||||||||||| | ||||||| |||||||||||||||| |||||||||||||
Sbjct 844 GATGAATGGCGG------A---GCAGAACCAAAGAAGGCAGTTATGCCTTTAAGAAGAGC 894
Query 964 CTCAATGTCCTCAAAAGGCTGTTCTCGATGCTTGAAGACAAAGAAGGAGAGTAATAGCTT 1023
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 895 CTCAATGTCCTCAAAACGCTGTTCTCGATGCTTGAAGACAAAGAAAGAGAGTAATAGCTT 954
Query 1024 GAGTGTTCCTCTAAAGAAAACCAGGAAACATGTAGGTGACAAGTGTAAAGACTTGGTTGA 1083
|||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 955 GAGTGTTCCTCTAATGAAAACCAGGAAACGTGTAGGTGAGAAGTGTAAAGACTTGGTTGA 1014
Query 1084 AGAGAAAACTCTCTATGTTATTAAGATGGAAACAGTGGATGAGATTGTTGAATCTGAACT 1143
|||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||
Sbjct 1015 AGAGAAAACTCTCTATGTGATTAAGATGGAAACAGGGGATGAGATTGTTGAGTCTGAACA 1074
Query 1144 GAACCAGAGGTGTGTCATGGATTCACCTATTGATGATCCAAAGAGCGAAAAGAGCCAAGA 1203
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1075 GAACCAGAGGTGTGTCATGGATTCACCTACTGATGACCCAAAGAGCGAAAAGAGCCAAGA 1134
Query 1204 CAAAGGTGAGTGTATTGAGACTGAACATGAAGATGAGTCTTCTCaagaagaggaagacga 1263
| ||| ||||||| |||||||||||| ||| ||||| ||||||| |||||||| | | ||
Sbjct 1135 CGAAGCTGAGTGTCTTGAGACTGAACCTGATGATGAATCTTCTCGAGAAGAGG-A-A-GA 1191
Query 1264 agaagaagaagatgagaatgtgtctgtctctgaagataagaaCACAACAAGGGAAGGAAA 1323
||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 1192 AGAAGAAGAAGCTGAGAATGTGTCTTTCTCTGAAGATAAGAGCACAACAATGGAAGGAAA 1251
Query 1324 AAGCAAAGCCTTCTCAGCAGAATCCGCTATAACTGGCAATGCGATGAAACTGAGAATCAG 1383
|||||||||| ||||||||||||||||| ||| ||||||| || ||||||||||||||
Sbjct 1252 AAGCAAAGCCCTCTCAGCAGAATCCGCTGTAAATGGCAATTCGGCGAAACTGAGAATCAA 1311
Query 1384 AAGAGGAAAGATTATAGATTTTGGATCAGAAGGAAACAGTCCAAGAAAGCTCAAGTTCAA 1443
|||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
Sbjct 1312 AAGAGGAAAGATTATAGATTTTGGATTACAAGGAAGCAGTCCAAGAAAGCTCAAGTTCGA 1371
Query 1444 GAGAGGAAAAATCATTTCCGGAGCTGACACAACCTCGAAATCTGGTGGTAGGAGACGCTT 1503
|||||||||| || | | ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1372 GAGAGGAAAAGTCGTCACAGGAGCTGACACAACCTCTAAATCCGGTGGTAGGAGACGCTC 1431
Query 1504 AAAGACCAAAGGAACCAACTTAAGCAACGACAAGGAACAACAACGCAAACCCAGAGTTGT 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 AAAGACCAAAGGAACCAACTTAAGCAACGACAAGGAACAACAACGCAAACCCAGAGTTGT 1491
Query 1564 TCTGAAACACCAAGACACAGAGAAGAAGAGAGAATCAAGAGTGTTGTTGTTCAACAAAGT 1623
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 1492 TCTGAAACACCAAGACACACAGAAGAAGAGAGAAGCAAGAGTGTTGCTGTTCAACAAAGT 1551
Query 1624 TATTAAGGAAACAGCTAATAAGCTAGTACAGACTCGCAAGAGCAAAGTTAAGGCTTTAGT 1683
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1552 TATTAAGGAAACAGCTAATAAGCTTGTGCAGACTCGCAAGAGCAAAGTTAAGGCTTTAGT 1611
Query 1684 TGGTGCTTTCGAGTCTGTCATATCTCTCCAAGAAAAGACTTCTTCTGCAACAACATAAAC 1743
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1612 GGGTGCTTTTGAGTCTGTCATATCTCTCCAAGAAAAGACTTCTTCTGCAACAATATAAAC 1671
Query 1744 ACATAAAAATGATTATA-CTCACAAGAATCTCTAACTAAATAATCTTTTATTTTTTCTT- 1801
||||||||||||||||| | || ||||||||||||||||||||| ||||||||||||||
Sbjct 1672 ACATAAAAATGATTATAAC-CAGAAGAATCTCTAACTAAATAATATTTTATTTTTTCTTT 1730
Query 1802 CACTTGTATTTATGTATGTATGTA---AAC-ATATGTAGAGTTTGTAAGAGTGCAATGAC 1857
| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1731 CGCTTGTGTTTATGTATGTATGTATGTAAAGATATGTAGAGTTTGTAAGAGTGCAATGAC 1790
Query 1858 TCAC 1861
||||
Sbjct 1791 TCAC 1794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69933689820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5