BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15440.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941028 jgi|Araly1|941028|scaffold_601572.1 1485 0.0
> Ahg941028 jgi|Araly1|941028|scaffold_601572.1
Length=938
Score = 1485 bits (804), Expect = 0.0
Identities = 872/906 (96%), Gaps = 0/906 (0%)
Strand=Plus/Plus
Query 357 TGATTGAAACACAGAGAGAATGATTTTACCAAAGCAGTATTGTTGCACACACTCGCCGAG 416
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2 TGATTGAAACGCAGAGAGAATGATTTTACCAAAGCAGTATCGTTGCACACACTCGCCGAG 61
Query 417 CTGCCAATGCACCAAAGGCCATTTAAACGAAGACGTGTTGTTATTAGTGTTCCAACATTT 476
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTGCCAATGCACAAAAGGCCATTTAAACGAAGACGTGTTGTTATTAGTGTTCCAACATTT 121
Query 477 GAATTGGAATCCGAAATTAGTTGCAACACTTTCCTGTGTATGCAGATGGTTTGATGATTT 536
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 122 GAATTGGAATCCGAAATTAGTTGCAACATTTTCCTGTGTATGCAGATGGTTTGATGATTT 181
Query 537 CGCCAAACGGGTACTATGGAAAGAGTTTTGCAAGACTCGTGCCCCAAAAATGATGCTTGA 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 182 CGCCAAACGGGTACTATGGAAAGAGTTTTGCAAGACGCGTGCCCCAAAAATGATGCTTGA 241
Query 597 TTTGCAGTCTAGCGGTAGTCACTGCATTGACGGTAACTGGCGAGCCCTTGGGAAGCTTCT 656
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 242 TTTGCAATCTAGCGGTAGTCACTGCATTGACGGTAACTGGCGAGCCCTTGGGAAGCTGCT 301
Query 657 CATCTACTGCTCAGGATGTACACAAGGTGGTCTTTTCAATAGCTCTGTTCAAATCCCAGG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CATCTACTGCTCAGGATGTACACAAGGTGGTCTTTTCAATAGCTCTGTTCAAATCCCAGG 361
Query 717 CCACTTTGTTTATAGAACCCGGTTCTCAAGAACATTAGGAAGAAGCCTCCTTCCGCCTCA 776
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 362 CCACTTTGTTTATAGAACCCGGTTCTCAAGAACATTAGGAAAAAGCCTCCTTCCACCTCA 421
Query 777 GTGTAGAACTGATGTACTCTATGTTTGTGATCCATGCGAGCATCTTGACCAAGGAGAAGA 836
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 422 GTGTAGAACCGATGTACTCTATGTTTGTGATCCATGTGAGCATCTTGACCAAGGGGAAGA 481
Query 837 AGGCGACGTGGGTTTGTTCCGTGGGATTTTCAAGTCATTCCCAACATCGAAAGTTCGGAA 896
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 482 AGGGGACGTGGGTTTGTTCCGTGGGATTTTCAAGTCATTCCCAACATCTAAAGTCCGGAA 541
Query 897 AGTGATCATTAACAAGGCGGTTCCTTTTCATCCATCCGAGGTTTGCCCGTATTGTAAAGC 956
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 542 AGTGATCATTAACAAGGCAGTTCCTTTTCATCCGTCCGAGGTTTGCCCGTATTGTAAAGC 601
Query 957 TAAGCTATGGAGCATGCTACAAGCTAAGATAATACCTCAGAGTGCCTGCATTCGTTTGGA 1016
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TAGGCTATGGAGCATGCTACAAGCTAAGATAATACCTCAGAGTGCCTGCATTCGTTTGGA 661
Query 1017 AGCTTATGAAGACTGCATTGAGTATTTTGTTTGCCTTAATGGACATTTGCTGGGTATCTG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 662 AGCTTATGAAGACTGCATTGAGTATTTTGTTTGCCTTAATGGACATTTGCTCGGTATCTG 721
Query 1077 CACTCTCGCGCCTTTGTCTGATTCAGAGGATGCAATTCCAAGCGAAGATAACAATCACAC 1136
|||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct 722 CACTCTTGCGCCTTTGTCTGATTCGGAGGATGCTATTCCAAGCGAAGATAGCAATCACAT 781
Query 1137 AGAGAAGAAACAAGACAATGGCTTTCCTAGAGAGAACGTATTGAAAAGGAGAAATTCTTT 1196
||||||||||||||||||| || |||| | ||||||||||||||||||||||||||||||
Sbjct 782 AGAGAAGAAACAAGACAATTGCCTTCCGAAAGAGAACGTATTGAAAAGGAGAAATTCTTT 841
Query 1197 GTTGGGTGGAAGTGAAAATGGACCTCCGCCGCAAAAACGACTGACCAATCCTAATCAGTG 1256
|||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct 842 GTTGGGTGTAAGTGAAAATGGACCTCCGCCTCAAAAACGATTGACCAATCCAAATCAATG 901
Query 1257 AAACAT 1262
|||||
Sbjct 902 TAACAT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5