BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15460.1

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488391 jgi|Araly1|488391|fgenesh2_kg.6__1525__AT5G15460.2         701    0.0  


> Ahg488391 jgi|Araly1|488391|fgenesh2_kg.6__1525__AT5G15460.2
Length=686

 Score =  701 bits (379),  Expect = 0.0
 Identities = 434/460 (94%), Gaps = 5/460 (1%)
 Strand=Plus/Plus

Query  155  TATGGCAGAGGTGAAGGATCAATTAGAGATTAAGTTCCGGCTTAACGATGGTTCTGATAT  214
            |||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct  119  TATGGCAGAGGTTAAGGATCAATTAGAGATTAAGTTCCGGCTCAATGATGGTTCCGATAT  178

Query  215  CGGTCCTAAATTGTTTCCTGATGCTACTACCGTTGCTACATTGAAAGAAACCGTTGTTGC  274
            ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  179  CGGTCCTAAATCGTTTCCTGATGCTACTACCGTTGCTACATTGAAAGAAACTGTTGTTGC  238

Query  275  TCAGTGGCCAAGAGATAAGGAGAACGGGCCAAAGACAGTGAAAGATGTTAAACTGATAAG  334
            |||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||
Sbjct  239  TCAGTGGCCAAGAGATAAGGAGAATGGGCCAAAGACAGTGAAAGATGTGAAGTTGATAAG  298

Query  335  CGCGGGTAGAATATTGGAGAACAACAAAACGGTTGGAGATTGCAGGAGTCCCGTCGGCAA  394
            ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  299  CGCGGGTAGAATATTGGAGAACAACAAGACGGTTGGAGATTGCAGGAGTCCTGTCGGCAA  358

Query  395  TTTCTCAGGTGCTGTCACCACAATGCATGTTATAATTCAACATCAAGTTACTgaaaaag-  453
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  359  TTTCTCAGGTGCTGTCACCACAATGCATGTTATAATTCATCATCAAGTTACTGAAAAAGA  418

Query  454  -aa-aagaagaagaagaagCCTAAAGGTGATCTGAAACAGAACAAATGTGTCTGTTTATG  511
             || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  419  AAAGAAGAAGAAGAAGAAGTCTAAAGGTGATCTGAAACAGAACAAATGTGTCTGTTTATG  478

Query  512  TTTTGGAGCTCGTTGTTAACAATTGTGCAAGACAAGTAGAGAGAGTTAAAAAAGCTTGGG  571
            |||||||||||| ||||||||| ||||||||||||||||||  |   |||||| ||||||
Sbjct  479  TTTTGGAGCTCGGTGTTAACAAATGTGCAAGACAAGTAGAGTTAA--AAAAAACCTTGGG  536

Query  572  AGATTCACATTCTGTTCTTGAGCCTTCTTCAATACCTTTT  611
            ||||||||||||| ||||||||||||||||||||||||||
Sbjct  537  AGATTCACATTCTATTCTTGAGCCTTCTTCAATACCTTTT  576


 Score =  122 bits (66),  Expect = 3e-27
 Identities = 97/110 (88%), Gaps = 9/110 (8%)
 Strand=Plus/Plus

Query  652  CATGATTGGCTTTTTGATCGCTTGAGGTTTGGTTTCTATTGTATTTCGGATTCGCAACAC  711
            |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct  577  CATGATTGGCTTTTTGATCGCTTGAGGTTTGGTTTCTAATGTAATTCTGATTCGCAACAC  636

Query  712  CGTGGAA--ATTATTA------GGTAACAAA-CAAATTTGCACGGAATAA  752
            |||||||  |||||||      |||| |||| ||||||||||||||||||
Sbjct  637  CGTGGAATTATTATTATTATTAGGTATCAAAACAAATTTGCACGGAATAA  686



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28249081497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5