BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15470.1 Length=2596 Score E Sequences producing significant alignments: (Bits) Value Ahg326001 jgi|Araly1|326001|fgenesh1_pm.C_scaffold_6001221 2643 0.0 Ahg477431 jgi|Araly1|477431|fgenesh2_kg.3__132__AT3G01040.1 1916 0.0 > Ahg326001 jgi|Araly1|326001|fgenesh1_pm.C_scaffold_6001221 Length=1722 Score = 2643 bits (1431), Expect = 0.0 Identities = 1548/1604 (97%), Gaps = 9/1604 (1%) Strand=Plus/Plus Query 570 GGAGGATGCAGCTTCACATATCGCCGAGTATGAGAAGCATTACGATTTCGAGCAGCAATG 629 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 128 GGAGGATGCAGCTTCACATATCGCCGAGCATGAGAAGCATCACGATTTCGAGCAGCAATG 187 Query 630 AGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTACCGAACTCTCT 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 AGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTACCGAACTCTCT 247 Query 690 TCCACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTTTTCATTCTCACCGCTGTTG 749 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct 248 TCCACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTCTTCATCCTCACCGCTCTTG 307 Query 750 TTACCCTTGAGGGTGTCAACAAATGCTCCTCCATTGATTGTTTAGGGAGGCGGATAGGTC 809 ||||||| || ||||||||||||||||||||| | || |||||||||||||||| Sbjct 308 TTACCCTCGAAGGTGTCAACAAATGCTCCTCC----A----TT-GGGAGGCGGATAGGTC 358 Query 810 CACGTCTTCTTGGTAGGGTAGATGATTCAGAGAGACTAGCTAGAGACTTTTATAAAATTC 869 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CGCGTCTTCTTGGTAGGGTAGATGATTCAGAGAGACTAGCTAGAGACTTTTATAAAATTC 418 Query 870 TAAACGAAGTAAGCACTCAAGAAATTCCAGATGGTTTGAAGCTTCCAAATTCTTTTAGTC 929 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TAAACGAAGTAAGTACTCAAGAAATTCCAGATGGTTTGAAGCTTCCAAATTCTTTTAGTC 478 Query 930 AACTTGTTTCCGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTGC 989 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 AACTTGTTTCAGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTGC 538 Query 990 GAGCCATGATGGAGAAGTTTGAACGTGATATGAGGGAATCGAAATTTGCAGAACTTATGA 1049 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 539 GAGCCATGATGGAGAAGTTTGAACGGGATATGAGGGAATCGAAATTTGCAGAACTTATGA 598 Query 1050 ACAAGCACTTTGCAGCAAGTTCCATTCCCAAAGGCATTCATTGTCTCTCTCTAAGACTGA 1109 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 599 ACAAGCACTTTGCAGCGAGTTCCATTCCCAAAGGCATTCATTGTCTCTCTCTAAGGCTGA 658 Query 1110 CAGATGAATATTCCTCCAATGCTCATGCTCGAAGACAGCTTCCTTCACCAGAGTTTCTCC 1169 |||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 659 CAGATGAATATTCCTCGAATGCTCATGCTCGTAGACAACTTCCTTCTCCAGAGTTTCTCC 718 Query 1170 CTGTTCTTTCAGATAATGCTTACCACCACTTTATTTTGTCCACGGACAATATTTTGGCTG 1229 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 719 CTGTTCTTTCAGATAATGCTTACCACCATTTTATTCTGTCCACGGACAATATTTTGGCTG 778 Query 1230 CCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTCAAAACCCGAGAAAATTGTCTTTC 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 CCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTCAAAACCCGAGAAAATTGTCTTTC 838 Query 1290 ACATCATTACAGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCGCTTAATTCTG 1349 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 ACATCATCACAGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCGCTTAATTCTG 898 Query 1350 TTGCACCAGCAATTGTTGAGGTTAAAGGTGTTCATCAGTTTGACTGGTTGACGAGAGAGA 1409 |||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 899 TTGCGCCAGCTATTGTCGAGGTCAAAGGTGTTCATCAGTTTGACTGGTTGACGAGAGAGA 958 Query 1410 ATGTTCCGGTTTTGGAAGCTGTGGAAAGCCATAATGGTGTCAGGGACTATTATCATGGGA 1469 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 959 ATGTTCCGGTTTTGGAAGCTGTGGAAAGCCATAATGGTGTCAGGAACTATTATCATGGGA 1018 Query 1470 ATCATGTCGCTGGGGCAAACCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGC 1529 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1019 ATCATGTCGCTGGGGCAAACCTCACAGAAACAACTCCACGAACATTTGCTTCAAAATTGC 1078 Query 1530 AGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGC 1589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 AGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGC 1138 Query 1590 TTTTCCCGAACTTGGACAAGGTGGTTTTCTTAGACGATGATATAGTTGTCCAGGGAGACT 1649 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1139 TTTTCCCGAACTTGGACAAGGTGGTCTTCTTAGACGATGATATAGTTGTCCAGGGAGACT 1198 Query 1650 TAACTCCACTTTGGGATGTTGACCTCGGTGGTAAGGTCAATGGGGCAGTAGAGACTTGCA 1709 ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 1199 TAACTCCACTTTGGGATGTTGACCTTGGTGGTAATGTCAATGGAGCAGTAGAGACTTGCA 1258 Query 1710 GGGGTGAAGATGAATGGGTGATGTCAAAGCGTTTAAGGAACTACTTCAATTTCTCTCACC 1769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1259 GGGGTGAAGATGAATGGGTGATGTCAAAGCGTTTAAGGAACTACTTCAATTTCTCTCATC 1318 Query 1770 CGCTCATCGCAAAGCATTTAGATCCTGAAGAATGTGCTTGGGCATATGGTATGAATATCT 1829 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1319 CGCTCATTGCAAAGCATTTAGATCCTGAAGAATGTGCTTGGGCATATGGTATGAATGTGT 1378 Query 1830 TCGATCTACAAGCTTGGAGGAAAACAAATATCAGAGAAACGTATCACTCTTGGCTTAGAG 1889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 TCGATCTACAAGCTTGGAGGAAAACAAATATCAGAGAAACGTATCACTCTTGGCTTAGAG 1438 Query 1890 AGAATCTAAAGTCAAATCTGACAATGTGGAAACTTGGAACCTTGCCTCCTGCTCTTATCG 1949 ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1439 AGAATCTAAAGTCGAATCTGACAATGTGGAAGCTTGGAACCTTGCCTCCTGCTCTGATCG 1498 Query 1950 CGTTCAAGGGTCACGTACACATAATAGACTCGTCATGGCATATGCTAGGATTAGGCTACC 2009 |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || | Sbjct 1499 CGTTCAAGGGTCACGTTCACATAATAGACTCGTCATGGCATATGCTTGGATTAGGGTATC 1558 Query 2010 AGAGCAAGACCAACATAGAAAATGTGAAGAAAGCAGCAGTGATCCACTACAATGGGCAGT 2069 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 1559 AGAGCAAGACCAACATAGAACATGTGAAGAAAGCTGCAGTGATCCACTACAATGGGCAAT 1618 Query 2070 CAAAGCCATGGCTGGAGATTGGTTTCGAGCATCTGCGGCCATTCTGGACCAAATACGTCA 2129 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1619 CAAAGCCATGGCTGGAGATTGGTTTCGAGCATCTGCGGCCATTCTGGACAAAATACGTCA 1678 Query 2130 ACTACTCAAATGATTTCATCAAGAACTGTCACATATTGGAGTAG 2173 ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1679 ACTACTCAAATGATTTCATAAAGAACTGTCACATATTGGAGTAG 1722 Score = 211 bits (114), Expect = 2e-53 Identities = 125/130 (96%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 353 ATGCGGTCTGGGAGAAGACCACAAGGAAGAAGAATAGCTAT-AAGGAACGAAACAGAGAC 411 |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| Sbjct 1 ATGCGGTCTGGGAGAAGACCACAAGGAAGAAGAAAAGC-GTCAAGGAACGAAACAGAGAC 59 Query 412 GGAATTGAGATCGAGAATCGGAGAGAAATCGGGATCGGAGAAGCGGAATCTGATCGGATC 471 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 60 GGAATTGAGATCGAGAATCGGGGAGAAATCGGGATCGGAGAAGCGGAATCTGATCGGATC 119 Query 472 TGATGTTGGG 481 |||||||||| Sbjct 120 TGATGTTGGG 129 > Ahg477431 jgi|Araly1|477431|fgenesh2_kg.3__132__AT3G01040.1 Length=2453 Score = 1916 bits (1037), Expect = 0.0 Identities = 1455/1658 (88%), Gaps = 24/1658 (1%) Strand=Plus/Plus Query 552 GTGGGGCTGCACTACCAAGGAGGATGCAGCTTCACATATCGCCGAGTATGAGAAGCATTA 611 |||||||||||| | | | |||||||||||||||||||||||||| ||||||||||||| Sbjct 400 GTGGGGCTGCACGAAC-A--AGGATGCAGCTTCACATATCGCCGAGCATGAGAAGCATTA 456 Query 612 CGATTTCGAGCAGCAATGAGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACA 671 |||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 457 CGATATCGAGCAGCAATGAGTTTATCGATTTGATGAAGATCAAAGTCGCAGCTCGTCACA 516 Query 672 TCTCTTACCGAACTCTCTTCCACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTTT 731 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 517 TTTCTTACCGAACTCTCTTCCACACTATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTCT 576 Query 732 TCATTCTCACCGCTGTTGTTACCCTTGAGGGTGTCAACAAATGCTCCTCCATTGATTGTT 791 |||| || |||||||||||||||||||| ||||||||||| ||||||||| ||||||||| Sbjct 577 TCATCCTAACCGCTGTTGTTACCCTTGAAGGTGTCAACAAGTGCTCCTCCTTTGATTGTT 636 Query 792 TAGGGAGGCGGATAGGTCCACGTCTTCTTGGTAGGGTAGATGATTC--AG-AGAGACTAG 848 | ||||||||| |||| |||||||||||||||||| |||||||||| || ||||||||| Sbjct 637 TTGGGAGGCGGTTAGGACCACGTCTTCTTGGTAGGATAGATGATTCAGAGCAGAGACTAG 696 Query 849 CTAGAGACTTTTATAAAATTCTAAACGAAGTAAGCACTCAAGAAATTCCAGATGGTTTGA 908 |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 697 TTAGAGATTTTTACAAAATTCTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAA 756 Query 909 AGCTTCCAAATTCTTTTAGTCAACTTGTTTCCGATATGAAGAATAACCACTATGATGCAA 968 |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct 757 AGCTTCCAGATTCTTTTAGTCAACTTGTTTCGGATATGAAGAACAACCACTATGATGCGA 816 Query 969 AAACATTTGCTCTTGTGCTGCGAGCCATGATGGAGAAGTTTGAACGTG-ATATGAGGGAA 1027 |||||||||| || || || ||||| ||| | |||||||||||| | | || | |||||| Sbjct 817 AAACATTTGCCCTCGTACTTCGAGCTATGGTAGAGAAGTTTGAAAGGGAAT-TAAGGGAA 875 Query 1028 TCGAAATTTGCAGAACTTATGAACAAGCACTTTGCAGCAAGTTCCATTCCCAAAGGCATT 1087 || |||||||||||||| |||||||| |||||||| |||||||| ||||| ||||| ||| Sbjct 876 TCCAAATTTGCAGAACTCATGAACAAACACTTTGCTGCAAGTTCAATTCCAAAAGGAATT 935 Query 1088 CATTGTCTCTCTCTAAGACTGACAGATGAATATTCCTCCAATGCTCATGCTCGAAGACAG 1147 || ||||||||| ||||||| || |||||||||||||||||||||||||| || |||||| Sbjct 936 CACTGTCTCTCTTTAAGACTAACTGATGAATATTCCTCCAATGCTCATGCCCGGAGACAG 995 Query 1148 CTTCCTTCACCAGAGTTTCTCCCTGTTCTTTCAGATAATGCTTACCACCACTTTATT-TT 1206 |||||||| || ||| ||||||||||||| ||||| ||||||||||| || ||| || | Sbjct 996 CTTCCTTCCCCGGAGCTTCTCCCTGTTCTCTCAGACAATGCTTACCATCATTTTGTTCTA 1055 Query 1207 GTCCACGGACAATATTTTGGCTGCCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTC 1266 | | || |||||||| |||||||| || |||||||||||||| |||||||| |||||||| Sbjct 1056 G-CTACAGACAATATCTTGGCTGCATCGGTTGTGGTCTCATCTGCTGTTCAATCATCTTC 1114 Query 1267 AAAACCCGAGAAAATTGTCTTTCACATCATTACAGACAAGAAAACCTATGCGGGTATGCA 1326 |||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| Sbjct 1115 AAAACCCGAGAAAATTGTCTTTCATGTTATCACAGACAAGAAAACCTATGCGGGTATGCA 1174 Query 1327 TTCATGGTTTGCGCTTAATTCTGTTGCACCAGCAATTGTTGAGGTTAAAGGTGTTCATCA 1386 ||| ||||||||||| |||||||| || || || |||||||| || ||| |||||||||| Sbjct 1175 TTCTTGGTTTGCGCTCAATTCTGTCGCTCCTGCGATTGTTGAAGTCAAAAGTGTTCATCA 1234 Query 1387 GTTTGACTGGTTGACGAGAGAGAATGTTCCGGTTTTGGAAGCTGTGGAAAGCCATAATGG 1446 |||||||||||| || |||||||||||||||||| | |||||||||||||||||||| | Sbjct 1235 GTTTGACTGGTTAACAAGAGAGAATGTTCCGGTTCTCGAAGCTGTGGAAAGCCATAACAG 1294 Query 1447 TGTCAGGGACTATTATCATGGGAATCATGTCGCTGGGGCAAACCTCACCGAAACAACTCC 1506 | |||| | ||||| |||||||||||| ||||||| |||||||||| ||||||||||| Sbjct 1295 TATCAGAAATTATTACCATGGGAATCATATCGCTGGTGCAAACCTCAGTGAAACAACTCC 1354 Query 1507 TCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCA 1566 ||||||||||||||| ||| |||| || |||||||| ||||||||||||||||||||||| Sbjct 1355 TCGAACATTTGCTTCGAAACTGCAATCAAGAAGTCCCAAATACATATCTTTGCTCAACCA 1414 Query 1567 TCTTAGAATATATATACCAGAGCTTTTCCCGAACTTGGACAAGGTGGTTTTCTTAGACGA 1626 ||| ||||||||| ||||||||||||| |||||||| |||||||| || |||||||| || Sbjct 1415 TCTAAGAATATATCTACCAGAGCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGA 1474 Query 1627 TGATATAGTTG-TCCAGGGAGACTTAACTCCACTTTGGGATGTTGACCTCGGTGGTAAGG 1685 ||||||||| | | ||| |||| ||| |||| ||||||||| ||||||| || |||| Sbjct 1475 TGATATAGT-GATACAGAGAGATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGG 1533 Query 1686 TCAATGGGGCAGTAGAGACTTG-CAGGGGTGAAGATGAATGGGTGATGTCAAAGCGT-TT 1743 | ||||| || || |||||||| | | || ||||||| |||||| |||||||||||| || Sbjct 1534 TTAATGGAGCTGTGGAGACTTGTC-GAGGAGAAGATGTATGGGTTATGTCAAAGCGTCTT 1592 Query 1744 AAGGAACTACTTCAATTTCTCTCACCCGCTCATCGCAAAGCATTTAGATCCTGAAGAATG 1803 | ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct 1593 A-GGAACTACTTCAATTTCTCTCACCCCCTCATCGCAAAGCATTTGGATCCCGAAGAATG 1651 Query 1804 TGCTTGGGCATATGGTATGAATATCTTCGATCTACA-AGCTTGGAGGAAAACAAATATCA 1862 ||||||||| ||||| ||||||||||||||||||| | |||||||||| |||||||||| Sbjct 1652 TGCTTGGGCTTATGGAATGAATATCTTCGATCTACGGA-CTTGGAGGAAGACAAATATCA 1710 Query 1863 GAGAAACGTATCACTCTTGGCTTAGAGAGAATCTAAAGTCAAATCTGACAATGTGGAAAC 1922 ||||||| ||||| |||||||||| ||||||||| ||||| ||||| ||||||||||||| Sbjct 1711 GAGAAACTTATCATTCTTGGCTTAAAGAGAATCTGAAGTCGAATCTAACAATGTGGAAAC 1770 Query 1923 TTGGAACCTTGCCTCCTGCTCTTATCGCGTTCAAGGGTCACGTACA-CATAATAGACTCG 1981 ||||||| |||||||||||||| || || || || ||||| || || | |||||| ||| Sbjct 1771 TTGGAACATTGCCTCCTGCTCTAATAGCATTTAAAGGTCATGTTCAGCC-AATAGATTCG 1829 Query 1982 TCATGGCATATGCTAGGATTAGGCTACCAGAGCAAGACCAACATAGAAAATGTGAAGAAA 2041 || ||||||||||| |||||||| || |||||||| |||||| ||||||||| ||||||| Sbjct 1830 TCTTGGCATATGCTTGGATTAGGTTATCAGAGCAACACCAACTTAGAAAATGCGAAGAAA 1889 Query 2042 GCAGCAGTGATCCACTACAATGGGCAGTCAAAGCCATGGCTGGAGATTGGTTTCGAGCAT 2101 || |||||||| || |||||||| || |||||||| ||||| ||||| |||||||||||| Sbjct 1890 GCTGCAGTGATTCATTACAATGGCCAATCAAAGCCGTGGCTCGAGATAGGTTTCGAGCAT 1949 Query 2102 CTGCGG-CCATTCTGGACCAAATACGTCAACTACTCAAATGATTTCATCAAGAACTGTCA 2160 || | | ||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||| Sbjct 1950 CT-CAGACCATTCTGGACAAAATATGTTAACTACTCCAATGATTTCATAAAGAATTGTCA 2008 Query 2161 CATATTGGAGTAGGAAAACCGAAA-CTTTGAGATGATC 2197 || ||||| ||| ||| | |||| ||| |||| ||| Sbjct 2009 TATCTTGGAATAGCAAA-CAGAAAGCTTCCAGATAATC 2045 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97891929650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5