BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15470.1
Length=2596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326001 jgi|Araly1|326001|fgenesh1_pm.C_scaffold_6001221 2643 0.0
Ahg477431 jgi|Araly1|477431|fgenesh2_kg.3__132__AT3G01040.1 1916 0.0
> Ahg326001 jgi|Araly1|326001|fgenesh1_pm.C_scaffold_6001221
Length=1722
Score = 2643 bits (1431), Expect = 0.0
Identities = 1548/1604 (97%), Gaps = 9/1604 (1%)
Strand=Plus/Plus
Query 570 GGAGGATGCAGCTTCACATATCGCCGAGTATGAGAAGCATTACGATTTCGAGCAGCAATG 629
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 128 GGAGGATGCAGCTTCACATATCGCCGAGCATGAGAAGCATCACGATTTCGAGCAGCAATG 187
Query 630 AGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTACCGAACTCTCT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTACCGAACTCTCT 247
Query 690 TCCACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTTTTCATTCTCACCGCTGTTG 749
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 248 TCCACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTCTTCATCCTCACCGCTCTTG 307
Query 750 TTACCCTTGAGGGTGTCAACAAATGCTCCTCCATTGATTGTTTAGGGAGGCGGATAGGTC 809
||||||| || ||||||||||||||||||||| | || ||||||||||||||||
Sbjct 308 TTACCCTCGAAGGTGTCAACAAATGCTCCTCC----A----TT-GGGAGGCGGATAGGTC 358
Query 810 CACGTCTTCTTGGTAGGGTAGATGATTCAGAGAGACTAGCTAGAGACTTTTATAAAATTC 869
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGCGTCTTCTTGGTAGGGTAGATGATTCAGAGAGACTAGCTAGAGACTTTTATAAAATTC 418
Query 870 TAAACGAAGTAAGCACTCAAGAAATTCCAGATGGTTTGAAGCTTCCAAATTCTTTTAGTC 929
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAAACGAAGTAAGTACTCAAGAAATTCCAGATGGTTTGAAGCTTCCAAATTCTTTTAGTC 478
Query 930 AACTTGTTTCCGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTGC 989
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AACTTGTTTCAGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTGC 538
Query 990 GAGCCATGATGGAGAAGTTTGAACGTGATATGAGGGAATCGAAATTTGCAGAACTTATGA 1049
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 GAGCCATGATGGAGAAGTTTGAACGGGATATGAGGGAATCGAAATTTGCAGAACTTATGA 598
Query 1050 ACAAGCACTTTGCAGCAAGTTCCATTCCCAAAGGCATTCATTGTCTCTCTCTAAGACTGA 1109
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 ACAAGCACTTTGCAGCGAGTTCCATTCCCAAAGGCATTCATTGTCTCTCTCTAAGGCTGA 658
Query 1110 CAGATGAATATTCCTCCAATGCTCATGCTCGAAGACAGCTTCCTTCACCAGAGTTTCTCC 1169
|||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 659 CAGATGAATATTCCTCGAATGCTCATGCTCGTAGACAACTTCCTTCTCCAGAGTTTCTCC 718
Query 1170 CTGTTCTTTCAGATAATGCTTACCACCACTTTATTTTGTCCACGGACAATATTTTGGCTG 1229
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 719 CTGTTCTTTCAGATAATGCTTACCACCATTTTATTCTGTCCACGGACAATATTTTGGCTG 778
Query 1230 CCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTCAAAACCCGAGAAAATTGTCTTTC 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTCAAAACCCGAGAAAATTGTCTTTC 838
Query 1290 ACATCATTACAGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCGCTTAATTCTG 1349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACATCATCACAGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCGCTTAATTCTG 898
Query 1350 TTGCACCAGCAATTGTTGAGGTTAAAGGTGTTCATCAGTTTGACTGGTTGACGAGAGAGA 1409
|||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGCGCCAGCTATTGTCGAGGTCAAAGGTGTTCATCAGTTTGACTGGTTGACGAGAGAGA 958
Query 1410 ATGTTCCGGTTTTGGAAGCTGTGGAAAGCCATAATGGTGTCAGGGACTATTATCATGGGA 1469
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 959 ATGTTCCGGTTTTGGAAGCTGTGGAAAGCCATAATGGTGTCAGGAACTATTATCATGGGA 1018
Query 1470 ATCATGTCGCTGGGGCAAACCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGC 1529
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1019 ATCATGTCGCTGGGGCAAACCTCACAGAAACAACTCCACGAACATTTGCTTCAAAATTGC 1078
Query 1530 AGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGC 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGC 1138
Query 1590 TTTTCCCGAACTTGGACAAGGTGGTTTTCTTAGACGATGATATAGTTGTCCAGGGAGACT 1649
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1139 TTTTCCCGAACTTGGACAAGGTGGTCTTCTTAGACGATGATATAGTTGTCCAGGGAGACT 1198
Query 1650 TAACTCCACTTTGGGATGTTGACCTCGGTGGTAAGGTCAATGGGGCAGTAGAGACTTGCA 1709
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1199 TAACTCCACTTTGGGATGTTGACCTTGGTGGTAATGTCAATGGAGCAGTAGAGACTTGCA 1258
Query 1710 GGGGTGAAGATGAATGGGTGATGTCAAAGCGTTTAAGGAACTACTTCAATTTCTCTCACC 1769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1259 GGGGTGAAGATGAATGGGTGATGTCAAAGCGTTTAAGGAACTACTTCAATTTCTCTCATC 1318
Query 1770 CGCTCATCGCAAAGCATTTAGATCCTGAAGAATGTGCTTGGGCATATGGTATGAATATCT 1829
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1319 CGCTCATTGCAAAGCATTTAGATCCTGAAGAATGTGCTTGGGCATATGGTATGAATGTGT 1378
Query 1830 TCGATCTACAAGCTTGGAGGAAAACAAATATCAGAGAAACGTATCACTCTTGGCTTAGAG 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCGATCTACAAGCTTGGAGGAAAACAAATATCAGAGAAACGTATCACTCTTGGCTTAGAG 1438
Query 1890 AGAATCTAAAGTCAAATCTGACAATGTGGAAACTTGGAACCTTGCCTCCTGCTCTTATCG 1949
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1439 AGAATCTAAAGTCGAATCTGACAATGTGGAAGCTTGGAACCTTGCCTCCTGCTCTGATCG 1498
Query 1950 CGTTCAAGGGTCACGTACACATAATAGACTCGTCATGGCATATGCTAGGATTAGGCTACC 2009
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1499 CGTTCAAGGGTCACGTTCACATAATAGACTCGTCATGGCATATGCTTGGATTAGGGTATC 1558
Query 2010 AGAGCAAGACCAACATAGAAAATGTGAAGAAAGCAGCAGTGATCCACTACAATGGGCAGT 2069
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 1559 AGAGCAAGACCAACATAGAACATGTGAAGAAAGCTGCAGTGATCCACTACAATGGGCAAT 1618
Query 2070 CAAAGCCATGGCTGGAGATTGGTTTCGAGCATCTGCGGCCATTCTGGACCAAATACGTCA 2129
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1619 CAAAGCCATGGCTGGAGATTGGTTTCGAGCATCTGCGGCCATTCTGGACAAAATACGTCA 1678
Query 2130 ACTACTCAAATGATTTCATCAAGAACTGTCACATATTGGAGTAG 2173
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1679 ACTACTCAAATGATTTCATAAAGAACTGTCACATATTGGAGTAG 1722
Score = 211 bits (114), Expect = 2e-53
Identities = 125/130 (96%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 353 ATGCGGTCTGGGAGAAGACCACAAGGAAGAAGAATAGCTAT-AAGGAACGAAACAGAGAC 411
|||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 1 ATGCGGTCTGGGAGAAGACCACAAGGAAGAAGAAAAGC-GTCAAGGAACGAAACAGAGAC 59
Query 412 GGAATTGAGATCGAGAATCGGAGAGAAATCGGGATCGGAGAAGCGGAATCTGATCGGATC 471
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGAATTGAGATCGAGAATCGGGGAGAAATCGGGATCGGAGAAGCGGAATCTGATCGGATC 119
Query 472 TGATGTTGGG 481
||||||||||
Sbjct 120 TGATGTTGGG 129
> Ahg477431 jgi|Araly1|477431|fgenesh2_kg.3__132__AT3G01040.1
Length=2453
Score = 1916 bits (1037), Expect = 0.0
Identities = 1455/1658 (88%), Gaps = 24/1658 (1%)
Strand=Plus/Plus
Query 552 GTGGGGCTGCACTACCAAGGAGGATGCAGCTTCACATATCGCCGAGTATGAGAAGCATTA 611
|||||||||||| | | | |||||||||||||||||||||||||| |||||||||||||
Sbjct 400 GTGGGGCTGCACGAAC-A--AGGATGCAGCTTCACATATCGCCGAGCATGAGAAGCATTA 456
Query 612 CGATTTCGAGCAGCAATGAGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACA 671
|||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 457 CGATATCGAGCAGCAATGAGTTTATCGATTTGATGAAGATCAAAGTCGCAGCTCGTCACA 516
Query 672 TCTCTTACCGAACTCTCTTCCACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTTT 731
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 517 TTTCTTACCGAACTCTCTTCCACACTATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTCT 576
Query 732 TCATTCTCACCGCTGTTGTTACCCTTGAGGGTGTCAACAAATGCTCCTCCATTGATTGTT 791
|||| || |||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 577 TCATCCTAACCGCTGTTGTTACCCTTGAAGGTGTCAACAAGTGCTCCTCCTTTGATTGTT 636
Query 792 TAGGGAGGCGGATAGGTCCACGTCTTCTTGGTAGGGTAGATGATTC--AG-AGAGACTAG 848
| ||||||||| |||| |||||||||||||||||| |||||||||| || |||||||||
Sbjct 637 TTGGGAGGCGGTTAGGACCACGTCTTCTTGGTAGGATAGATGATTCAGAGCAGAGACTAG 696
Query 849 CTAGAGACTTTTATAAAATTCTAAACGAAGTAAGCACTCAAGAAATTCCAGATGGTTTGA 908
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 697 TTAGAGATTTTTACAAAATTCTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAA 756
Query 909 AGCTTCCAAATTCTTTTAGTCAACTTGTTTCCGATATGAAGAATAACCACTATGATGCAA 968
|||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 757 AGCTTCCAGATTCTTTTAGTCAACTTGTTTCGGATATGAAGAACAACCACTATGATGCGA 816
Query 969 AAACATTTGCTCTTGTGCTGCGAGCCATGATGGAGAAGTTTGAACGTG-ATATGAGGGAA 1027
|||||||||| || || || ||||| ||| | |||||||||||| | | || | ||||||
Sbjct 817 AAACATTTGCCCTCGTACTTCGAGCTATGGTAGAGAAGTTTGAAAGGGAAT-TAAGGGAA 875
Query 1028 TCGAAATTTGCAGAACTTATGAACAAGCACTTTGCAGCAAGTTCCATTCCCAAAGGCATT 1087
|| |||||||||||||| |||||||| |||||||| |||||||| ||||| ||||| |||
Sbjct 876 TCCAAATTTGCAGAACTCATGAACAAACACTTTGCTGCAAGTTCAATTCCAAAAGGAATT 935
Query 1088 CATTGTCTCTCTCTAAGACTGACAGATGAATATTCCTCCAATGCTCATGCTCGAAGACAG 1147
|| ||||||||| ||||||| || |||||||||||||||||||||||||| || ||||||
Sbjct 936 CACTGTCTCTCTTTAAGACTAACTGATGAATATTCCTCCAATGCTCATGCCCGGAGACAG 995
Query 1148 CTTCCTTCACCAGAGTTTCTCCCTGTTCTTTCAGATAATGCTTACCACCACTTTATT-TT 1206
|||||||| || ||| ||||||||||||| ||||| ||||||||||| || ||| || |
Sbjct 996 CTTCCTTCCCCGGAGCTTCTCCCTGTTCTCTCAGACAATGCTTACCATCATTTTGTTCTA 1055
Query 1207 GTCCACGGACAATATTTTGGCTGCCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTC 1266
| | || |||||||| |||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 1056 G-CTACAGACAATATCTTGGCTGCATCGGTTGTGGTCTCATCTGCTGTTCAATCATCTTC 1114
Query 1267 AAAACCCGAGAAAATTGTCTTTCACATCATTACAGACAAGAAAACCTATGCGGGTATGCA 1326
|||||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1115 AAAACCCGAGAAAATTGTCTTTCATGTTATCACAGACAAGAAAACCTATGCGGGTATGCA 1174
Query 1327 TTCATGGTTTGCGCTTAATTCTGTTGCACCAGCAATTGTTGAGGTTAAAGGTGTTCATCA 1386
||| ||||||||||| |||||||| || || || |||||||| || ||| ||||||||||
Sbjct 1175 TTCTTGGTTTGCGCTCAATTCTGTCGCTCCTGCGATTGTTGAAGTCAAAAGTGTTCATCA 1234
Query 1387 GTTTGACTGGTTGACGAGAGAGAATGTTCCGGTTTTGGAAGCTGTGGAAAGCCATAATGG 1446
|||||||||||| || |||||||||||||||||| | |||||||||||||||||||| |
Sbjct 1235 GTTTGACTGGTTAACAAGAGAGAATGTTCCGGTTCTCGAAGCTGTGGAAAGCCATAACAG 1294
Query 1447 TGTCAGGGACTATTATCATGGGAATCATGTCGCTGGGGCAAACCTCACCGAAACAACTCC 1506
| |||| | ||||| |||||||||||| ||||||| |||||||||| |||||||||||
Sbjct 1295 TATCAGAAATTATTACCATGGGAATCATATCGCTGGTGCAAACCTCAGTGAAACAACTCC 1354
Query 1507 TCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCA 1566
||||||||||||||| ||| |||| || |||||||| |||||||||||||||||||||||
Sbjct 1355 TCGAACATTTGCTTCGAAACTGCAATCAAGAAGTCCCAAATACATATCTTTGCTCAACCA 1414
Query 1567 TCTTAGAATATATATACCAGAGCTTTTCCCGAACTTGGACAAGGTGGTTTTCTTAGACGA 1626
||| ||||||||| ||||||||||||| |||||||| |||||||| || |||||||| ||
Sbjct 1415 TCTAAGAATATATCTACCAGAGCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGA 1474
Query 1627 TGATATAGTTG-TCCAGGGAGACTTAACTCCACTTTGGGATGTTGACCTCGGTGGTAAGG 1685
||||||||| | | ||| |||| ||| |||| ||||||||| ||||||| || ||||
Sbjct 1475 TGATATAGT-GATACAGAGAGATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGG 1533
Query 1686 TCAATGGGGCAGTAGAGACTTG-CAGGGGTGAAGATGAATGGGTGATGTCAAAGCGT-TT 1743
| ||||| || || |||||||| | | || ||||||| |||||| |||||||||||| ||
Sbjct 1534 TTAATGGAGCTGTGGAGACTTGTC-GAGGAGAAGATGTATGGGTTATGTCAAAGCGTCTT 1592
Query 1744 AAGGAACTACTTCAATTTCTCTCACCCGCTCATCGCAAAGCATTTAGATCCTGAAGAATG 1803
| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1593 A-GGAACTACTTCAATTTCTCTCACCCCCTCATCGCAAAGCATTTGGATCCCGAAGAATG 1651
Query 1804 TGCTTGGGCATATGGTATGAATATCTTCGATCTACA-AGCTTGGAGGAAAACAAATATCA 1862
||||||||| ||||| ||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 1652 TGCTTGGGCTTATGGAATGAATATCTTCGATCTACGGA-CTTGGAGGAAGACAAATATCA 1710
Query 1863 GAGAAACGTATCACTCTTGGCTTAGAGAGAATCTAAAGTCAAATCTGACAATGTGGAAAC 1922
||||||| ||||| |||||||||| ||||||||| ||||| ||||| |||||||||||||
Sbjct 1711 GAGAAACTTATCATTCTTGGCTTAAAGAGAATCTGAAGTCGAATCTAACAATGTGGAAAC 1770
Query 1923 TTGGAACCTTGCCTCCTGCTCTTATCGCGTTCAAGGGTCACGTACA-CATAATAGACTCG 1981
||||||| |||||||||||||| || || || || ||||| || || | |||||| |||
Sbjct 1771 TTGGAACATTGCCTCCTGCTCTAATAGCATTTAAAGGTCATGTTCAGCC-AATAGATTCG 1829
Query 1982 TCATGGCATATGCTAGGATTAGGCTACCAGAGCAAGACCAACATAGAAAATGTGAAGAAA 2041
|| ||||||||||| |||||||| || |||||||| |||||| ||||||||| |||||||
Sbjct 1830 TCTTGGCATATGCTTGGATTAGGTTATCAGAGCAACACCAACTTAGAAAATGCGAAGAAA 1889
Query 2042 GCAGCAGTGATCCACTACAATGGGCAGTCAAAGCCATGGCTGGAGATTGGTTTCGAGCAT 2101
|| |||||||| || |||||||| || |||||||| ||||| ||||| ||||||||||||
Sbjct 1890 GCTGCAGTGATTCATTACAATGGCCAATCAAAGCCGTGGCTCGAGATAGGTTTCGAGCAT 1949
Query 2102 CTGCGG-CCATTCTGGACCAAATACGTCAACTACTCAAATGATTTCATCAAGAACTGTCA 2160
|| | | ||||||||||| ||||| || |||||||| ||||||||||| ||||| |||||
Sbjct 1950 CT-CAGACCATTCTGGACAAAATATGTTAACTACTCCAATGATTTCATAAAGAATTGTCA 2008
Query 2161 CATATTGGAGTAGGAAAACCGAAA-CTTTGAGATGATC 2197
|| ||||| ||| ||| | |||| ||| |||| |||
Sbjct 2009 TATCTTGGAATAGCAAA-CAGAAAGCTTCCAGATAATC 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97891929650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5