BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15480.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941033 jgi|Araly1|941033|scaffold_601577.1 1336 0.0
Ahg951046 jgi|Araly1|951046|scaffold_802933.1 429 2e-119
Ahg951043 jgi|Araly1|951043|scaffold_802930.1 429 2e-119
> Ahg941033 jgi|Araly1|941033|scaffold_601577.1
Length=1351
Score = 1336 bits (723), Expect = 0.0
Identities = 1080/1246 (87%), Gaps = 49/1246 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGACGAACATCAAGATCTCCATAAACCCAT-TAATGGAGCTTTGCGAGACCTCAA 59
|||||||| |||||||||||||||||||||||||| | |||||||| ||||| |||||||
Sbjct 21 ATGGAAGAAGAACATCAAGATCTCCATAAACCCATCT-ATGGAGCTCTGCGAAACCTCAA 79
Query 60 GATTACTCGGTCACAG-AAAGAAACAGAA-AAGTCTACGAACCAACAGCAAGATGTTACT 117
|||||||| |||| | |||||||||||| || |||| ||||| ||||| |||| |||||
Sbjct 80 GATTACTCATTCAC-GTAAAGAAACAGAAGAA-TCTATGAACCTACAGCGAGATTTTACT 137
Query 118 TGTTACTATGGTCTAAGGGAAAACTCGAAGAAGAAAACCCAGGAATCTCCGGAACCAATG 177
|||||||| ||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 138 TGTTACTACGGTCTAAGGGAAAACCCGAAGAAGAAAATCCAGGAGTCTCCGGAACCAATG 197
Query 178 AAGAAGATTTTGTTTCGATGCGAAGAATGTGGAAAAGGGTTTCGGTACGAGAAATATTTT 237
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 198 AAGAAGATCTTGTTTCGATGCGAAGAATGTGGAAAAGGGTTTCGGTACGAGAAATGTTTT 257
Query 238 AAGAATCAT-CGCTCGATGATGCATTTATCGCCGAACGAGAAGGTTTGTGAAGAATCCTT 296
||||||| | || |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 258 TCGAATCATAAG-GCGGTGATGCATTTATCGACGAACCAGAAGGTTTGTGAAGAATCCGT 316
Query 297 GATGACTCTGTCTCGTAGCCTTGGGTTTGTGAAGAAGAAGAAAAGATCAAGACTTGGTAG 356
||||| ||| | ||||||||| | ||||||| ||||||||||||||| ||||||| |||
Sbjct 317 GATGAGTCTATGTCGTAGCCTAAGTTTTGTGAGGAAGAAGAAAAGATCGAGACTTGTTAG 376
Query 357 GT-CTGGGAAG-----A----C-T-TT-ATTTACTACGTTTCTTGAACCGAGTTCTATTT 403
|| | |||| | | | || ||||||||||||| ||||||| ||||| ||
Sbjct 377 GTAC-AAGAAGACTTCATTTTCTTGTTCGTTTACTACGTTTCATGAACCGCGTTCTGTTG 435
Query 404 TTGATGCGACTGATGAAGAATTAGAAGTGGCGGATTGTTTGATTCTATTGTCTAAGAGTG 463
||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 436 TTGCTGCGAATGATGAAGAATTAGAAGTGGCGGATTGTTTGATTCTATTGTCCGAGAGTA 495
Query 464 CTCCCAAGGTTGTAGACGAATTGAAAAGT-CTTTCTGAGGCAGTACGTGTTACTCCTGAA 522
|||||||| ||||||||| | | |||| | ||| |||||||||||| | |||||| ||||
Sbjct 496 CTCCCAAGTTTGTAGACGGACT-AAAACTTCTTGCTGAGGCAGTACATATTACTCATGAA 554
Query 523 ACACCTGAAAGTAGCTATGATTTGGGTTGTTTGC-TCAACAAGAAACCGAGAAA-AGGTG 580
|||||| ||||||||||||||||||||||||||| | |||||||||||| |||| || |
Sbjct 555 ACACCTAAAAGTAGCTATGATTTGGGTTGTTTGCGT-AACAAGAAACCGCGAAATAG-TA 612
Query 581 GTGAATTGGAATCTGGGGTTTTAAGTAATGAGCAAAGACTTATGGAAGAAGGGTTTAGTA 640
||||||| |||| |||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 613 GTGAATTTGAATATGGGTTTTTCAGTAATGAGCAAAGATTTATGGAAGAAGGGTTTAGTA 672
Query 641 GTTATGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGACGAAAACAGATTGGATCAGC 700
||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 673 GTTTTGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGATGATAACAGATTGGATCAAC 732
Query 701 AGAAACGGAGAAAAGATGGTGAATTTGAATCCGGACTTTT-GAGTAATGAGCAAAGACTG 759
||||||||||||||| ||||||||||||||| | | |||| |||||||||||||||| ||
Sbjct 733 AGAAACGGAGAAAAGCTGGTGAATTTGAATCTG-AGTTTTTGAGTAATGAGCAAAGAATG 791
Query 760 CTAGAAGAAGAGATTACTACTCCTGTGACATTCAAAGGTCCAGCGAGTTCCTTGAGACAC 819
||| |||||||||||||||||||||| ||||||||||||||||| |||| |||| ||| |
Sbjct 792 CTAAAAGAAGAGATTACTACTCCTGTTACATTCAAAGGTCCAGCAAGTTTCTTGGGACGC 851
Query 820 AAGTGTGCTTTGGATC-G-A-AA--TG-GA---GG---TGAATTTGGTCCTGAGTTTTTG 867
||||||| |||||||| | | || || || || || ||||||| |||||||| ||
Sbjct 852 AAGTGTGTTTTGGATCAGCACAAGCTGCGAAATGGAGGTGGATTTGGTTCTGAGTTTCTG 911
Query 868 AGTAATGAGCAAACACTGATGGAAGAAACATGGAAAGAACCAGTGAGTTTCTTAG-AAGA 926
||||||||||||| ||||| || | ||||||||||||||| ||||||||| | || |
Sbjct 912 AGTAATGAGCAAAAACTGACGGGTGGGGCATGGAAAGAACCAGAGAGTTTCTTGGTAACA 971
Query 927 TAAGCAT-GAATTTGATCAGCGGAAAATGCGAGAAGCTGGCGACTTTGAATCTAGGTTTT 985
||| || ||||| || ||||||||| ||||| ||||||| ||||||||| || ||| |
Sbjct 972 -AAG-ATTGAATTGGAACAGCGGAAACTGCGAAAAGCTGGTGACTTTGAAACTGGGTACT 1029
Query 986 ACAGAATTGAGCTTGGAGTAGGAGCTATGGAGTGTACTTCTTCAGATACTGATATGCTCA 1045
|||||| |||||||||||||||||||||||||||| || ||||||| |||| ||| |||
Sbjct 1030 ACAGAACTGAGCTTGGAGTAGGAGCTATGGAGTGTTCTGATTCAGATTCTGAGATGATCA 1089
Query 1046 C-GCAATCTGATAAGAAGAACGTTGAGCATCGATGCAGGTTGTGCAACAAGATATTCTCG 1104
| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1090 CTG-AATCTGATAAGAAGAACGTTGAGCATCAATGCAGGTTGTGCAACAAGATATTCTCT 1148
Query 1105 TCTTATCAAGCTCTAGGGGGTCATCAGACGTTTCATCGGATGAGCAAATGTAAGAACAAG 1164
|| |||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1149 TCATATCAAGCTCTAGGAGGTCATCAGACGATTCATCGGATGAGCAAATGTAAGTTCAAG 1208
Query 1165 AAGAATGGCATAGAGGAATCAGTTGAACCC-AGGATGACTCTGTGA 1209
|||||| ||| |||||||||||| ||||| ||||||| ||| |||
Sbjct 1209 AAGAATTGCAGAGAGGAATCAGTAGAACCTGAGGATGAATCTATGA 1254
> Ahg951046 jgi|Araly1|951046|scaffold_802933.1
Length=997
Score = 429 bits (232), Expect = 2e-119
Identities = 323/366 (88%), Gaps = 10/366 (3%)
Strand=Plus/Plus
Query 563 AGAAACCGAGAAAAGGTGGTGAATTGGAATCTGGGGTTTTAAGTAATGAGCAAAGACTTA 622
|||||||| |||||||||||||||| |||| ||||||||| ||| ||||||||||| |||
Sbjct 358 AGAAACCGCGAAAAGGTGGTGAATTTGAATATGGGGTTTTCAGTGATGAGCAAAGATTTA 417
Query 623 TGGAAGAAGGGTTTAGTAGTTATGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGACG 682
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 TGGAAGAAAGGTTTAGTAGTTATGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGATG 477
Query 683 AAAACAGATTGGATCAGCAGAAACGGAGAAAAGATGGTGAATTTGAATCCGGACTTTTGA 742
| ||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||
Sbjct 478 ATAACAGATTGGATCAGCAGAAACGAAGAAAAGCTGGTGAATTTGAATCTGGGTTTTTGA 537
Query 743 GTAATGAGCAAAGACTGCTAGAAGAAGAGATTACTACTCCTGTGACATTCAAAGGTCCAG 802
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 538 GTAATGAGCAAAGAATGCTAAAAGAAGAGATTACTACTCCTGTTACATTCAAAGGTCCAG 597
Query 803 CGAGTTCCTTGAGACACAAGTGTGCTTTGGATC-G-A-AA--TG-GAGGTGAATTTGG-T 855
| |||| |||| || ||||||||| |||||||| | | || || || || | || |
Sbjct 598 CAAGTTTCTTGGGATACAAGTGTGTTTTGGATCAGCAGAAGCTGCGAAATGGAGGTGAAT 657
Query 856 CCTGAGTT-TTTGAGTAATGAGCAAACACTGATGGAAGAAACATGGAAAGAACCAGTGAG 914
|| ||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 658 T-TG-GTTCTTTGAGTAATGAGCAAAAACTGATGGAAGGGACATGGAAAGAACCAGCGAG 715
Query 915 TTTCTT 920
||||||
Sbjct 716 TTTCTT 721
Score = 370 bits (200), Expect = 1e-101
Identities = 310/361 (86%), Gaps = 16/361 (4%)
Strand=Plus/Plus
Query 155 CCCAGGAATCTCCGGAACCAATGAAGAAGATTTTGTTTCGATGCGAAGAATGTGGAAAAG 214
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCTGGAATCTCCGGAACTAATGAAGAAGATTTTGTTTCGATGCGAAGAATGTGGAAAAG 60
Query 215 GGTTTCGGTACGAGAAATATTTTA-AGAATCATCGCTCGATGATGCATTTATCGCCGAAC 273
|||||||||||||||||| |||| | |||||||| ||| ||||||||||||| |||||
Sbjct 61 GGTTTCGGTACGAGAAATGTTTTTCA-AATCATCGAGCGACGATGCATTTATCGACGAAC 119
Query 274 GAGAAGGTTTGTGAAGAATCCTTGATGACTCTGTCTCGTAGCCTTGGGTTT-GTGAAGAA 332
||||||||| |||||||||| |||||||||||| ||||| | || |||| |||| |||
Sbjct 120 CAGAAGGTTTATGAAGAATCCATGATGACTCTGTGTCGTATC-TTCAGTTTTGTGAGGAA 178
Query 333 GAAGAAAAGATCAAGACTTGGTAGGTCTGGGAAGACTTTATTTACTA---CGT-T--T-C 385
|||||||||||| ||||||| ||||| | |||||||| |||| || ||| | | |
Sbjct 179 GAAGAAAAGATCGAGACTTGTTAGGTATAAGAAGACTTCATTTTCTTGTTCGTATAGTAC 238
Query 386 -TT----GAACCGAGTTCTATTTTTGATGCGACTGATGAAGAATTAGAAGTGGCGGATTG 440
|| |||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 239 ATTTCTTGAACCGCGTTCTGTTTTTGATGCGAATGATGAAGAATTAGAAGTGGCGGATTG 298
Query 441 TTTGATTCTATTGTCTAAGAGTGCTCCCAAGGTTGTAGACGAATTGAAAAGTCTTTCTGA 500
|||||||||||||||| ||||| |||||||| ||||||||| | ||||| |||| ||||
Sbjct 299 TTTGATTCTATTGTCTGAGAGTACTCCCAAGTTTGTAGACGGACTGAAACTTCTTGCTGA 358
Query 501 G 501
|
Sbjct 359 G 359
Score = 198 bits (107), Expect = 7e-50
Identities = 179/210 (85%), Gaps = 20/210 (10%)
Strand=Plus/Plus
Query 986 ACAGAATTGAGCTTGGAGTAGGAGCTATGGAGTGTACTTCTTCAGATACTGATATGCTCA 1045
||| || |||||||||||||||||||||||||||| || |||||||||||| ||| |||
Sbjct 743 ACA-AACTGAGCTTGGAGTAGGAGCTATGGAGTGTTCTGATTCAGATACTGAGATGATCA 801
Query 1046 C-GCAATCTGATAAGAAGAACGTTGAGCATCGATGCAGGTTGTGCAACAAGATAT-TCTC 1103
| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||
Sbjct 802 CTG-AATCTGATAAGAAGAACGTTGAGCATCAATGCAGGTTTTGCAACAAGATATAT-TC 859
Query 1104 GTCTTATCAAGC-TCTAGGGGGTCATCAGACGTTTCATCGGATGAGCAAATGTAAGAACA 1162
|||||||||||| || ||| | | || |||||||||||||||||||||||||
Sbjct 860 GTCTTATCAAGCATC-AGG-----A---G--GT--CATCGGATGAGCAAATGTAAGAACA 906
Query 1163 AGAAGAATGGCATAGAGGAATCAGTTGAAC 1192
|||||||| || |||||||||||| ||||
Sbjct 907 AGAAGAATTTCAGAGAGGAATCAGT-GAAC 935
> Ahg951043 jgi|Araly1|951043|scaffold_802930.1
Length=997
Score = 429 bits (232), Expect = 2e-119
Identities = 323/366 (88%), Gaps = 10/366 (3%)
Strand=Plus/Plus
Query 563 AGAAACCGAGAAAAGGTGGTGAATTGGAATCTGGGGTTTTAAGTAATGAGCAAAGACTTA 622
|||||||| |||||||||||||||| |||| ||||||||| ||| ||||||||||| |||
Sbjct 358 AGAAACCGCGAAAAGGTGGTGAATTTGAATATGGGGTTTTCAGTGATGAGCAAAGATTTA 417
Query 623 TGGAAGAAGGGTTTAGTAGTTATGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGACG 682
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 TGGAAGAAAGGTTTAGTAGTTATGGAACATCGAAAGAACCAGCTAGCTTCTTGAGAGATG 477
Query 683 AAAACAGATTGGATCAGCAGAAACGGAGAAAAGATGGTGAATTTGAATCCGGACTTTTGA 742
| ||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||
Sbjct 478 ATAACAGATTGGATCAGCAGAAACGAAGAAAAGCTGGTGAATTTGAATCTGGGTTTTTGA 537
Query 743 GTAATGAGCAAAGACTGCTAGAAGAAGAGATTACTACTCCTGTGACATTCAAAGGTCCAG 802
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 538 GTAATGAGCAAAGAATGCTAAAAGAAGAGATTACTACTCCTGTTACATTCAAAGGTCCAG 597
Query 803 CGAGTTCCTTGAGACACAAGTGTGCTTTGGATC-G-A-AA--TG-GAGGTGAATTTGG-T 855
| |||| |||| || ||||||||| |||||||| | | || || || || | || |
Sbjct 598 CAAGTTTCTTGGGATACAAGTGTGTTTTGGATCAGCAGAAGCTGCGAAATGGAGGTGAAT 657
Query 856 CCTGAGTT-TTTGAGTAATGAGCAAACACTGATGGAAGAAACATGGAAAGAACCAGTGAG 914
|| ||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 658 T-TG-GTTCTTTGAGTAATGAGCAAAAACTGATGGAAGGGACATGGAAAGAACCAGCGAG 715
Query 915 TTTCTT 920
||||||
Sbjct 716 TTTCTT 721
Score = 370 bits (200), Expect = 1e-101
Identities = 310/361 (86%), Gaps = 16/361 (4%)
Strand=Plus/Plus
Query 155 CCCAGGAATCTCCGGAACCAATGAAGAAGATTTTGTTTCGATGCGAAGAATGTGGAAAAG 214
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCTGGAATCTCCGGAACTAATGAAGAAGATTTTGTTTCGATGCGAAGAATGTGGAAAAG 60
Query 215 GGTTTCGGTACGAGAAATATTTTA-AGAATCATCGCTCGATGATGCATTTATCGCCGAAC 273
|||||||||||||||||| |||| | |||||||| ||| ||||||||||||| |||||
Sbjct 61 GGTTTCGGTACGAGAAATGTTTTTCA-AATCATCGAGCGACGATGCATTTATCGACGAAC 119
Query 274 GAGAAGGTTTGTGAAGAATCCTTGATGACTCTGTCTCGTAGCCTTGGGTTT-GTGAAGAA 332
||||||||| |||||||||| |||||||||||| ||||| | || |||| |||| |||
Sbjct 120 CAGAAGGTTTATGAAGAATCCATGATGACTCTGTGTCGTATC-TTCAGTTTTGTGAGGAA 178
Query 333 GAAGAAAAGATCAAGACTTGGTAGGTCTGGGAAGACTTTATTTACTA---CGT-T--T-C 385
|||||||||||| ||||||| ||||| | |||||||| |||| || ||| | | |
Sbjct 179 GAAGAAAAGATCGAGACTTGTTAGGTATAAGAAGACTTCATTTTCTTGTTCGTATAGTAC 238
Query 386 -TT----GAACCGAGTTCTATTTTTGATGCGACTGATGAAGAATTAGAAGTGGCGGATTG 440
|| |||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 239 ATTTCTTGAACCGCGTTCTGTTTTTGATGCGAATGATGAAGAATTAGAAGTGGCGGATTG 298
Query 441 TTTGATTCTATTGTCTAAGAGTGCTCCCAAGGTTGTAGACGAATTGAAAAGTCTTTCTGA 500
|||||||||||||||| ||||| |||||||| ||||||||| | ||||| |||| ||||
Sbjct 299 TTTGATTCTATTGTCTGAGAGTACTCCCAAGTTTGTAGACGGACTGAAACTTCTTGCTGA 358
Query 501 G 501
|
Sbjct 359 G 359
Score = 198 bits (107), Expect = 7e-50
Identities = 179/210 (85%), Gaps = 20/210 (10%)
Strand=Plus/Plus
Query 986 ACAGAATTGAGCTTGGAGTAGGAGCTATGGAGTGTACTTCTTCAGATACTGATATGCTCA 1045
||| || |||||||||||||||||||||||||||| || |||||||||||| ||| |||
Sbjct 743 ACA-AACTGAGCTTGGAGTAGGAGCTATGGAGTGTTCTGATTCAGATACTGAGATGATCA 801
Query 1046 C-GCAATCTGATAAGAAGAACGTTGAGCATCGATGCAGGTTGTGCAACAAGATAT-TCTC 1103
| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||
Sbjct 802 CTG-AATCTGATAAGAAGAACGTTGAGCATCAATGCAGGTTTTGCAACAAGATATAT-TC 859
Query 1104 GTCTTATCAAGC-TCTAGGGGGTCATCAGACGTTTCATCGGATGAGCAAATGTAAGAACA 1162
|||||||||||| || ||| | | || |||||||||||||||||||||||||
Sbjct 860 GTCTTATCAAGCATC-AGG-----A---G--GT--CATCGGATGAGCAAATGTAAGAACA 906
Query 1163 AGAAGAATGGCATAGAGGAATCAGTTGAAC 1192
|||||||| || |||||||||||| ||||
Sbjct 907 AGAAGAATTTCAGAGAGGAATCAGT-GAAC 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5