BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15490.1
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488394 jgi|Araly1|488394|fgenesh2_kg.6__1528__AT5G15490.1 2883 0.0
Ahg927678 jgi|Araly1|927678|scaffold_300135.1 1622 0.0
Ahg936755 jgi|Araly1|936755|scaffold_500946.1 1114 0.0
> Ahg488394 jgi|Araly1|488394|fgenesh2_kg.6__1528__AT5G15490.1
Length=1780
Score = 2883 bits (1561), Expect = 0.0
Identities = 1713/1786 (96%), Gaps = 12/1786 (1%)
Strand=Plus/Plus
Query 1 TCCATCGTCAGATTTAGCGATTTCACCTCCATTTTCTTCGATCAGTGCTAGAACCAGAGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TCCATCGTCAGATTTAGCGATTTCACCTCCATTTTCTTCGATCAGTGTTAGAACCAGAGC 60
Query 61 CTACCTAGCTCGCACCT-TAAGGAGGTGATTCAGTTTACAAGCAAAATGGTGAAGATTTG 119
|||| |||||| || || ||| | | |||||||||||||||||||||||||||||||
Sbjct 61 CTACATAGCTCTCA-CTCTAAAGTTTTTTTTCAGTTTACAAGCAAAATGGTGAAGATTTG 119
Query 120 CTGCATTGGAGCTGGATATGTTGGTGGTCCAACCATGGCTGTCATTGCTCTAAAGTGTCC 179
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 120 CTGCATTGGAGCTGGATATGTTGGTGGTCCAACCATGGCGGTCATTGCTCTCAAGTGTCC 179
Query 180 ATCTGTTGAAGTAGCTGTTGTTGATATCTCTGTGCCAAGGATCAATGCCTGGAACAGTGA 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 180 ATCTGTTGAAGTAGCTGTTGTTGATATCTCTGTGCCAAGGATCAATGCATGGAACAGCGA 239
Query 240 TCAG-TTACCGATCTATGAGCCTGGTCTTGATGATGTCGTTAAGCAGTGCCGTGGAAAGA 298
||| || || ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 240 CCAGCTT-CCAATCTATGAGCCTGGTCTCGATGATGTGGTTAAGCAGTGCCGTGGAAAGA 298
Query 299 ATCTCTTCTTCAGCACCGATGTTGAGAAACATGTGAGAGAGGCTGACATTGTTTTTGTGT 358
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 ATCTCTTCTTCAGCACTGATGTTGAGAAGCATGTGAGAGAGGCTGACATTGTTTTTGTGT 358
Query 359 CTGTCAACACCCCTACTAAGACCCGTGGTCTTGGAGCTGGCAAAGCTGCGGATTTGACTT 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTGTCAACACCCCGACTAAGACCCGTGGTCTTGGAGCTGGCAAAGCTGCGGATTTGACTT 418
Query 419 ACTGGGAGAGCGCTGCTCGTATGATTGCCGATGTTTCGGTTTCCGACAAGATTGTTGTTG 478
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 419 ACTGGGAGAGCGCTGCTCGTATGATTGCGGATGTTTCGGTTTCTGACAAGATTGTTGTTG 478
Query 479 AGAAATCAACTGTTCCTGTCAAAACCGCAGAGGCAATTGAGAAGATTCTTACACACAACA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 479 AGAAATCAACTGTTCCTGTCAAAACCGCAGAGGCAATTGAGAAGATTCTTACCCACAATA 538
Query 539 GCAAAGGAATCAAATTCCAGATTCTGTCAAACCCTGAGTTCCTTGCTGAAGGAACCGCTA 598
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 GCAAAGGAATCAAATTCCAGATTTTGTCAAACCCTGAGTTCCTTGCTGAAGGAACCGCTA 598
Query 599 TTGAAGACCTTTTCATGCCTGACCGTGTCCTCATCGGTGGTCGTGAAACAACTGAAGGCT 658
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 TTGAAGACCTTTTCATGCCTGACCGTGTCCTCATCGGTGGTCGTGAAACACCTGAAGGCT 658
Query 659 TTGCAGCCGTCAAAGCCTTGAAAGACATTTATGCCCAATGGGTCCCTGAAGAGAGAATCC 718
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 659 TTGCAGCCGTCAAAGCCTTGAAAGACGTTTATTCCCAATGGGTCCCTGAAGAGAGAATCC 718
Query 719 TCACCACCAATCTATGGTCTGCCGAGCTTTCCAAGCTTGCAGCTAATGCCTTCCTAGCCC 778
||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 719 TCACCACCAATCTCTGGTCTGCCGAGCTTTCCAAGCTTGCAGCTAACGCCTTCTTAGCCC 778
Query 779 AGAGAATCTCATCAGTCAATGCAATGTCCGCTCTCTGTGAGGCAACTGGCGCCAATGTCT 838
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 AGAGAATCTCATCAGTCAATGCAATGTCCGCTCTCTGTGAAGCAACTGGCGCCAATGTCT 838
Query 839 CAGAGGTCTCTTATGCTGTGGGCAAAGACTCTCGTATTGGTCCCAAGTTCTTGAACTCTA 898
||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 839 CAGAGGTCTCTTACGCTGTGGGCAAAGACTCCCGGATTGGTCCCAAGTTCTTGAACTCGA 898
Query 899 GTGTTGGGTTCGGAGGATCTTGTTTCCAGAAAGATATTCTCAACTTAGTCTACATCTGCG 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GTGTTGGATTCGGAGGATCTTGTTTCCAGAAAGATATTCTCAACTTAGTCTACATCTGCG 958
Query 959 AATGCAACGGCTTACCCGAAGTTGCTGAGTACTGGAAACAAGTCATCAAGATCAACGACT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AATGCAACGGCTTACCCGAAGTTGCTGAGTACTGGAAACAAGTCATCAAGATCAACGACT 1018
Query 1019 ACCAGAAAACCCGATTTGTTAACCGCATTGTCTCTTCAATGTTTAACACAGTCTCCAACA 1078
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 ACCAGAAAACCCGATTTGTTAACCGCATTGTCTCTTCAATGTTCAACACAGTCTCCAACA 1078
Query 1079 AAAAGATTGCGGTTCTCGGCTTCGCTTTCAAGAAAGACACTGGAGACACTAGAGAGACTC 1138
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1079 AAAAGATTGCGGTTCTCGGGTTCGCTTTCAAGAAAGACACAGGAGACACAAGAGAGACTC 1138
Query 1139 CAGCCATTGATGTCTGCAAAGGTCTGTTAGGTGACAAGGCTCGTCTCAGCATCTACGACC 1198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 CAGCCATTGATGTCTGCAAAGGTCTGTTAGGTGACAAAGCTCGTCTCAGCATCTACGACC 1198
Query 1199 CACAAGTCACTGAAGAGCAGATCCAAAGAGACTTAACCATGAACAAATTCGACTGGGACC 1258
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CACAAGTCACTGAAGACCAGATCCAAAGAGACTTAACCATGAACAAATTCGACTGGGACC 1258
Query 1259 ACCCACTTCATCTCCAGCCCATGAGCCCCACCACTGTGAAGCAAGTCTCAGTCGCTTGGG 1318
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 ACCCGCTTCATCTCCAGCCCATGAGCCCCACCACTGTGAAACAAGTCTCAGTCGCTTGGG 1318
Query 1319 ACGCATACACTGCAACCAAAGACGCCCACGGTATCTGCATTTTAACCGAGTGGGACGAGT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACGCATACACTGCAACCAAAGACGCCCACGGTATCTGCATTTTAACCGAGTGGGACGAGT 1378
Query 1379 TCAAGAAACTTGATTTCCAGCGGATCTTTGAGAATATGCAGAAACCGGCTTTTGTTTTTG 1438
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCAAGAAACTCGATTTCCAGCGGATCTTTGAGAATATGCAGAAACCGGCTTTTGTTTTTG 1438
Query 1439 ACGGTAGAAACGTGGTCGACGCTGATAAACTCAGGGAGATTGGGTTTATTGTTTACTCCA 1498
|||||||||| |||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 1439 ACGGTAGAAATGTGGTCGACGCTGACAAACTCAGGCAAATTGGGTTTATTGTTTACTCCA 1498
Query 1499 TTGGTAAGCCATTGGACCAGTGGCTCAAGGACATGCCTGCTCTTGCCTAAACAACAACCA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTGGTAAGCCATTGGACCAGTGGCTCAAGGACATGCCTGCTCTTGCCTAAACAACAACCA 1558
Query 1559 AACCTCTTCCTTAGCTTTTTTCTCCATTTTTTCCGAATTCTCATGAGTTTTTCCATATAT 1618
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AACCTCTTCCTTAGCTTATTTCTCCATTTTTTCCGAATTCTCATGAGTTTTTCCATATAT 1618
Query 1619 CTTTAACTACAGTATGTTTGATCAATAATTGTTTCTTTTGTTCTT-C--C-TATTATGAA 1674
|||||||| || | || |||||||||||||| ||||| || || | | | |||||||
Sbjct 1619 TTTTAACTAT-GT-T-TT-GATCAATAATTGTTGCTTTTTTTTTTTCTTCGTTTTATGAA 1674
Query 1675 TTCCTACAGAGATTTTAGGTTTGGTTCTTGTTGGTAATTATGTACCTTGGGTTATCAAAT 1734
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1675 TTCCAACAGAGATTTTAGGTTTGGTTTTTGTTGGTAATTATGTACCTTGGGTTATCAAAT 1734
Query 1735 ATTGTAAGCTTTTCGAATATTACTTTCATAATATAAAAGTTTTCCC 1780
|||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1735 ATTGTAAGCTTTTCGAGTATTATTTTCATAATATAAAAGTTTTCCC 1780
> Ahg927678 jgi|Araly1|927678|scaffold_300135.1
Length=1486
Score = 1622 bits (878), Expect = 0.0
Identities = 1260/1448 (87%), Gaps = 12/1448 (1%)
Strand=Plus/Plus
Query 103 AAAATGGTGAAGATTTGCTGCATTGGAGCTGGATATGTTGGTGGTCCAACCATGGCTGTC 162
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 20 AAAATGGTGAAGATCTGCTGCATTGGAGCTGGTTATGTTGGTGGTCCAACTATGGCTGTC 79
Query 163 ATTGCTCT-AAAGTGTCCATCTGTTGAAGTAGCTGTTGTTGATATCTCTGTGCCAAGGAT 221
|||||| | ||| ||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 80 ATTGCTTTGAAA-TGTCCATCTGTTGAAGTTGCTGTTGTTGATATCTCTGTTCCACGGAT 138
Query 222 CAATGCCTGGAACAGTGATCAG-TTACCGATCTATGAGCCTGGTCTTGATGATGTCGTTA 280
|| ||| ||||||||||| ||| || || ||||||||||| || || |||||||| ||||
Sbjct 139 CACTGCTTGGAACAGTGACCAGCTT-CCTATCTATGAGCCGGGCCTCGATGATGTTGTTA 197
Query 281 AGCAGTGCCGTGGAAAGAATCTCTTCTTCAGCACCGATGTTGAGAAACATGTGAGAGAGG 340
|||| |||||||| ||||| |||||||| || || ||||| |||||||| |||||||| |
Sbjct 198 AGCAATGCCGTGGCAAGAACCTCTTCTTTAGTACTGATGTGGAGAAACACGTGAGAGAAG 257
Query 341 CTGACATTGTTTTTGTGTCTGTCAACACCCCTACTAAGACCCGTGGTCTTGGAGCTGGCA 400
|||| || || ||||| ||||| || ||||| |||||||| ||||||||||||||||| |
Sbjct 258 CTGATATCGTCTTTGTCTCTGTGAATACCCCGACTAAGACTCGTGGTCTTGGAGCTGGTA 317
Query 401 AAGCTGCGGATTTGACTTACTGGGAGAGCGCTGCTCGTATGATTGCCGATGTTTCGGTTT 460
||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 318 AAGCTGCTGATTTGACTTACTGGGAAAGCGCAGCTCGGATGATTGCTGATGTTTCGGTTT 377
Query 461 CCGACAAGATTGTTGTTGAGAAATCAACTGTTCCTGTCAAAACCGCAGAGGCAATTGAGA 520
| |||||||| ||||| |||||||||||||| |||||||||||||| || || |||||||
Sbjct 378 CTGACAAGATCGTTGTCGAGAAATCAACTGTCCCTGTCAAAACCGCTGAAGCTATTGAGA 437
Query 521 AGATTCTTACACACAACAGCAAAGGAATCAAATTCCAGATTCTGTCAAACCCTGAGTTCC 580
||||||| | |||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 438 AGATTCTGATGCACAACAGTAAAGGAATCAAGTTCCAGATTCTTTCCAACCCTGAGTTCC 497
Query 581 TTGCTGAAGGAACCGCTATTGAAGACCTTTTC-ATGCCTGACCGTGTCCTCATCGGTGGT 639
||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||
Sbjct 498 TTGCTGAAGGAACCGCTATTGAAGATCTTTTCTAT-CCTGACCGTGTTCTCATCGGTGGT 556
Query 640 CGTGAAACAACTGAAGGCTTTGCAGCCGTCAAAGCCTTGAAAGACATTTATGCCCAATGG 699
||||||||| | ||||| ||| ||| ||||||||||| |||||| ||||||| || |||
Sbjct 557 CGTGAAACACCCGAAGGGTTTAAAGCTGTCAAAGCCTTAAAAGACGTTTATGCTCAGTGG 616
Query 700 GTCCCTGAAGAGAGAATCCTCACCACCAATCTATGGTCTGCCGAGCTTTCCAAGCTTGCA 759
|| || ||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||||
Sbjct 617 GTTCCAGAAGATAGAATCCTAACCACTAATCTCTGGTCCGCTGAGCTCACCAAGCTTGCT 676
Query 760 GCTAATGCCTTCCTAGCCCAGAGAATCTCATCAGTCAATGCAATGTCCGCTCTCTGTGAG 819
|| || || ||| ||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 677 GCCAACGCATTCTTAGCCCAAAGAATCTCATCTGTCAATGCAATGTCTGCTCTCTGTGAA 736
Query 820 GCAACTGGCGCCAATGTCTCAGAGGTCTCTTATGCTGTGGGCAAAGACTCTCGTATTGGT 879
|| ||||| || |||||||| || ||||| |||||||| || ||||||||| | || |||
Sbjct 737 GCCACTGGTGCGAATGTCTCTGAAGTCTCCTATGCTGTTGGTAAAGACTCTAGAATCGGT 796
Query 880 CCCAAGTTCTTGAACTCTAGTGTTGGGTTCGGAGGATCTTGTTTCCAGAAAGATATTCTC 939
|||||||||||||| || ||||| || || || || || ||||||||||||||||| |||
Sbjct 797 CCCAAGTTCTTGAATTCGAGTGTCGGCTTTGGTGGCTCCTGTTTCCAGAAAGATATCCTC 856
Query 940 AACTTAGTCTACATCTGCGAATGCAACGGCTTACCC-GAAGTTGCTGAGTACTGGAAACA 998
||||||||||||||||| |||||||||||| | ||| ||||| || || |||||||||||
Sbjct 857 AACTTAGTCTACATCTGTGAATGCAACGGCCT-CCCTGAAGTAGCGGAATACTGGAAACA 915
Query 999 AGTCATCAAGATCAACGACTACCAGAAAACCCGATTTGTTAACCGCATTGTCTCTTCAAT 1058
||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || || ||
Sbjct 916 AGTCATCAAGATCAATGACTACCAGAAAACCCGGTTTGTAAACCGCATTGTGTCCTCGAT 975
Query 1059 GTTTAACACAGTCTCCAACAAAAAGATTGCGGTTCTCGGCTTCGCTTTCAAGAAAGACAC 1118
||| ||||| || ||||||||||||||||| || ||||| ||||| ||||||||||| ||
Sbjct 976 GTTCAACACCGTTTCCAACAAAAAGATTGCCGTCCTCGGGTTCGCCTTCAAGAAAGATAC 1035
Query 1119 TGGAGACACTAGAGAGACTCCAGCCATTGATGTCTGCAAAGGTCTGTTAGGTGACAAGGC 1178
|||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 1036 CGGAGACACGAGAGAGACTCCAGCCATTGATGTCTGCAAAGGTTTGTTAGGAGACAAAGC 1095
Query 1179 TCGTCTCAGCATCTACGACCCACAAGTCACTGAAGAGCAGATCCAAAGAGACTTAACCAT 1238
|| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1096 CCGAATCAGCATCTATGATCCACAAGTCACTGAAGAACAGATCCAAAGAGACTTAACCAT 1155
Query 1239 GAACAAATTCGACTGGGACCACCCACTTCATCTCCAGCCCATGAGCCCCACCACTGTGAA 1298
||||||||||||||||||||| ||| |||| || || |||||||| || |||||||||||
Sbjct 1156 GAACAAATTCGACTGGGACCATCCAATTCACCTTCAACCCATGAGTCCAACCACTGTGAA 1215
Query 1299 GCAAGTCTCAGTCGCTTGGGACGCATACACTGCAACCAAAGACGCCCACGGTATCTGCAT 1358
||||||||||||| ||||||||| || |||| || ||||| ||||| || |||||| |
Sbjct 1216 ACAAGTCTCAGTCGTTTGGGACGCCTATGCTGCCACTAAAGATGCCCATGGAATCTGC-T 1274
Query 1359 T-TTAACCGAGTGGGACGAGTTCAAGAAACTTGA-TTTCCAGCGGATCTTTGAGAATATG 1416
| ||||| |||||||||||||| ||| ||||| | | |||| |||||||| ||||||
Sbjct 1275 TGTTAACGGAGTGGGACGAGTTTAAGTCGCTTGACTAT-GAGCGTATCTTTGAAAATATG 1333
Query 1417 CAGAAACCGGCTTTTGTTTTTGACGGTAGAAACGTGGTCGACGCTGATAAACTCAGGGAG 1476
|||||||| || ||||| || || || ||||| || || || || || || || ||| ||
Sbjct 1334 CAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTGTTGATGCAGAGAAGCTGAGGAAG 1393
Query 1477 ATTGGGTTTATTGTTTACTCCATTGGTAAGCCATTGGACCAGTGGCTCAAGGACATGCCT 1536
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1394 ATAGGGTTTATTGTTTACTCTATTGGTAAGCCATTGGACCAGTGGCTCAAGGACATGCCT 1453
Query 1537 GCTCTTGC 1544
||||||||
Sbjct 1454 GCTCTTGC 1461
> Ahg936755 jgi|Araly1|936755|scaffold_500946.1
Length=1732
Score = 1114 bits (603), Expect = 0.0
Identities = 1188/1469 (81%), Gaps = 46/1469 (3%)
Strand=Plus/Plus
Query 103 AAAATGGTGAAGATTTGCTGCATTGGAGCTGGATATGTTGGTGGTCCAACCATGGCTGTC 162
||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 84 AAAATGGTGAAGATTTGTTGTATTGGAGCTGGGTATGTTGGTGGACCAACAATGGCAGTG 143
Query 163 ATTGCTCT-AAAGTGTCCA-TCTGTTGAAGTAGCTGTTGTTGATATCTCTGTGCCAAGGA 220
|||||| | ||| |||||| | ||||||||||| ||||||||||||||||| ||| | |
Sbjct 144 ATTGCTTTGAAA-TGTCCAGAC-GTTGAAGTAGCGGTTGTTGATATCTCTGTACCACGTA 201
Query 221 TCAATGCCTGGAACAGTGATCAG-TTACCGATCTATGAGCCTGGTCTTGATGATGTCGTT 279
|||| || ||||||||||| ||| || ||||| || |||||||||||||||||||| ||
Sbjct 202 TCAACGCTTGGAACAGTGACCAGCTT-CCGATTTACGAGCCTGGTCTTGATGATGTTGTG 260
Query 280 AAGCAGTGCCGTGGAAAGAATCTCTTCTTCAGCACCGATGTTGAGAAACATGTGAGAGAG 339
||||| |||||||||||||| || ||||| || || ||||||||||||||||| || ||
Sbjct 261 AAGCAATGCCGTGGAAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACATGTTAGGGAA 320
Query 340 GCTGACATTGTTTTTGTGTCTGTCAACACCCCTACTAAGACCCGTGGTCTTGGAGCTGGC 399
||||| ||||| ||||| |||||||| || || || || || | |||||||| |||||
Sbjct 321 GCTGATATTGTGTTTGTTTCTGTCAATACACCGACGAAAACTAGAGGTCTTGGTGCTGGT 380
Query 400 AAAGCTGCGGAT-TTGACTTACTGGGAGAGCGCTGCTCGTATGATTGCCGATGTTTCGGT 458
|||||||||||| || || || |||||||||||||| |||||||| || ||||| |||||
Sbjct 381 AAAGCTGCGGATCTT-ACGTATTGGGAGAGCGCTGCACGTATGATCGCTGATGTGTCGGT 439
Query 459 TTCCGACAAGATTGTTGTTGAGAAATCAACTGTTCCTGTCAAAACCGCAGAGGCAATTGA 518
|| || |||||||| ||||||||||| |||||||| || ||||| || || || |||||
Sbjct 440 ATCGGATAAGATTGTGGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAAGCTATTGA 499
Query 519 GAAGATTCTT-ACACACAACAGCAAAGGAATCAAATTCCAGATTCTGTCAAACCCTGAGT 577
||||||| || ||||| || |||||||| || || || |||||||| || || || ||||
Sbjct 500 GAAGATT-TTGACACATAATAGCAAAGGGATTAAGTTTCAGATTCTTTCGAATCCGGAGT 558
Query 578 TCCTT-GCTGAAGGAACCGCTATTGAA-GACCTTTTCATGCCTGACCGTGTCCTCATCGG 635
| || || ||||||||||| | | || || ||||| | ||||||||||| || || ||
Sbjct 559 T-TTTGGCGGAAGGAACCGCGA-TCAAGGATCTTTTTAACCCTGACCGTGTTCTTATTGG 616
Query 636 TGGTCGTGAAACAACTGAAGGCTTTGCAGCCGTCAAAGCCT-TGAAAGACATTTATGCCC 694
|| || || || | ||||| ||| ||| || || || | || || | ||||| |
Sbjct 617 AGGGCGGGAGACCCCGGAAGGGTTTAAAGCGGT-GCAGACTCTCAAGGATGTGTATGCTC 675
Query 695 AATGGGTCCCTGAA-GAGAGAATCCTCACCACCAATCTATGGTCTGCCGAGCTTTCCAAG 753
| ||||| |||||| | | |||| | |||||||||||||||||||| ||||||||||||
Sbjct 676 ATTGGGTTCCTGAAGGCCA-AATCATAACCACCAATCTATGGTCTGCTGAGCTTTCCAAG 734
Query 754 CTTGCAGCTAATGCCTTCCTAGCCCAGAGAATCTCATCAGTCAATGCAATGTCCGCTCTC 813
|||||||| || || ||| | || || || || ||||| |||||||| ||||| ||| |
Sbjct 735 CTTGCAGCAAACGCTTTCTTGGCTCAAAGGATTTCATCTGTCAATGCTATGTCGGCTTTA 794
Query 814 TGTGAGGCAACTGGCGCCA-ATGTCTCAG-AGGTCTCTTATGCTGTGGGCAAAGACTCTC 871
||||| || ||||| | || ||||| | | | || ||||| || || || | ||||||
Sbjct 795 TGTGAAGCCACTGGTG-CAGATGTCAC-GCAAGTGTCTTACGCCGTTGGTACAGACTCGA 852
Query 872 GTATTGGTCCCAAGTTCTTGAACTCTAGTGTTGGGTTCGGAGGATCTTGTTTCCAGAAAG 931
| |||||||| |||||||||||||| ||||| || |||||||| || ||||||||||| |
Sbjct 853 GAATTGGTCCTAAGTTCTTGAACTCGAGTGTCGGATTCGGAGGTTCGTGTTTCCAGAAGG 912
Query 932 ATATTCTCAA-CTTAGTCTACATCTGCGAATGCAACGG-CTTACCC-GAAGTTGCTGAGT 988
||||||| || ||| ||||||||||| || |||||||| | | ||| ||||| || ||||
Sbjct 913 ATATTCTGAATCTT-GTCTACATCTGTGAGTGCAACGGAC-T-CCCGGAAGTGGCAGAGT 969
Query 989 ACTGGAAACAAGTCATCAAGATCAACGACTACCAGAAAACCCGATTTGTTAACCGCATTG 1048
||||||||||||||||||||||||| ||||||||||| | ||| || || ||||| |||
Sbjct 970 ACTGGAAACAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGTTG 1029
Query 1049 TCTCTTCAATGTTTAACACAGTCTCCAACAAAAAGATTGCGGTTCTCGGCTTCGCTTTCA 1108
| ||||| ||||| ||| | || || ||||| ||||||||||||||||| ||||| ||||
Sbjct 1030 TTTCTTCCATGTTCAACTCCGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCGCATTCA 1089
Query 1109 AGAAAGACACTGGAGACACTAGAGAGACTCCAGCCATTGATGTCTGCAAAGGTCTGT-TA 1167
||||||| || || ||||| || || ||||||||||| || || ||||| ||||| | |
Sbjct 1090 AGAAAGATACAGGTGACACAAGGGAAACTCCAGCCATCGACGTGTGCAAGGGTCT-TCTC 1148
Query 1168 GGTGACAAGGCTCGTCTCAGCATCTACGACCCACAAGTCACTGAAGAGCAGATCCAAAGA 1227
| ||||| || | || || || |||||||| || || ||||| || |||||||| ||
Sbjct 1149 GAAGACAAAGCAAGGCTAAGTATTTACGACCCGCAGGTGACTGAGGATCAGATCCAGAGG 1208
Query 1228 GACTTAACCATGAACAAATTCGACTGGGACCACCCACTTCATCTCCAGCCCATGAGCCCC 1287
|| ||| |||||||||| |||||||||||||| || || ||| | ||||| ||||||||
Sbjct 1209 GATTTATCCATGAACAAGTTCGACTGGGACCATCCGCTACATTTGCAGCCAATGAGCCCA 1268
Query 1288 ACCACTGTGAAGCAAGTCT-CAGTCGCTTGGGACGCATAC-ACTGCAACCAAAGACGCCC 1345
||||| ||||| ||||| | || |||||||||||||| | ||||| || ||||| |
Sbjct 1269 ACCACAGTGAAACAAGTGAGC-GTTACTTGGGACGCATACGAA-GCAACTAAGGACGCGC 1326
Query 1346 ACGGTATCTGCATTTTAACCGAGTGGGACGAGTTCAAGAAACTTG-ATTTCCAGCGGATC 1404
||||||||||||| | || |||||||| ||||||||||| |||| | |||||| ||||
Sbjct 1327 ACGGTATCTGCATCATGACTGAGTGGGATGAGTTCAAGAA-CTTGGACTTCCAGAAGATC 1385
Query 1405 TTTGAGAATATGCAGAAACCGGCTTTTGTTTTTGACGGTAGAAACGTGGTCGACGCTG-A 1463
||||| || ||||||||||||||||| || || ||||| |||||| | | || ||| |
Sbjct 1386 TTTGACAACATGCAGAAACCGGCTTTCGTGTTCGACGGAAGAAACATTAT-GAATCTGCA 1444
Query 1464 TAAA-CTCAGGGAGATTGGGTTT-ATTGTTTACTCCATTGGTAAGCCA-TTGGACCAGTG 1520
||| || ||||||||||| ||| ||||||||||||||||||||||| ||| || | ||
Sbjct 1445 -AAAGCTAAGGGAGATTGG-TTTCATTGTTTACTCCATTGGTAAGCCCCTTG-ACGACTG 1501
Query 1521 GCTCAAGGACATGCCTGCTC-TTGCCTAA 1548
|||||||||||||||||| | ||||||||
Sbjct 1502 GCTCAAGGACATGCCTGC-CGTTGCCTAA 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66848379975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5