BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15510.2
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941037 jgi|Araly1|941037|scaffold_601581.1 963 0.0
> Ahg941037 jgi|Araly1|941037|scaffold_601581.1
Length=1345
Score = 963 bits (521), Expect = 0.0
Identities = 559/578 (97%), Gaps = 0/578 (0%)
Strand=Plus/Plus
Query 896 GCTAAGAATCTGGGTTTAGACCCCAATGCTTCGATTTCTTCGTCCTGGGACAGCACCCGT 955
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GCTAAGAATCTGGGGTTAGACCCCAATGCTTCGATTTCTTCGTCCTGGGACAGCACCCGC 671
Query 956 GGCAGTGTTTTGAGTGGAAGTTCAAATGCTGGCAGGAGAAGTAGAAGAAATAGCATGGAG 1015
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 672 GGCAGTGTTTTGAGTGGAAGTTCAAATGCTGGCAGGAGAAGCAGAAGAAATAGCATGGAC 731
Query 1016 TCATCGACTACAATGGGAAGTAGAAGATCAAAGAAGAAGCAGGTTAAGGTCACTTCATTG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TCATCGACTACAATGGGAAGTAGAAGATCAAAGAAGAAGCAGGTTAAGGTCACTTCATTG 791
Query 1076 AAGCCGTTTAAGCTTAGAACTGAGCAAAGAGGTAAAGTGAAAGAGGAAGAGTTAGCAAAA 1135
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 792 AAGCCGTTTAAGCTTAGAACTGAGCAAAGAGGTAAAATGAAAGAGGAAGAGTTTGCAAAA 851
Query 1136 AAGATACACGAAATAACAATGGAGGAAGAAAAGATGAGAATCCCCATTGCTCAAGGTCTT 1195
||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 852 AAGATTCATGAAATAACGTTGGAGGAAGAAAAGATGAGAATCCCCATTGCTCAAGGTCTT 911
Query 1196 CCATGGACAACCGATGAACCTGAGTGCCTAGTGAAGCCTCATTGGAAAGACATTACAAGA 1255
|| ||||||||||||||||||||||| ||||| ||||||||||||||||| || || |||
Sbjct 912 CCGTGGACAACCGATGAACCTGAGTGTCTAGTTAAGCCTCATTGGAAAGATATAACTAGA 971
Query 1256 CCAGTCGACTTGACGCTCCACTCAGATGTCCGGGCAGTTGAACGCGCAGAATTTGATTAC 1315
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 CCAGTCGACTTGACGCTTCACTCAGATGTCCGGGCAGTTGAACGCGCAGAATTTGATTAC 1031
Query 1316 CAGGTTGCCGAGAAGATGAGCTTCATTGAGCAATACAAAATGgaaagagaaagacaacag 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CAGGTTGCCGAGAAGATGAGCTTCATTGAGCAATACAAAATGGAAAGAGAAAGACAACAG 1091
Query 1376 aagttggcagaggaagaagagataagaaggctgaggaaagaaTTGGTCCCAAAAGCACAA 1435
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1092 AAGTTGGCAGAGGAAGAAGAGATAAAAAGGCTGAGGAAAGAATTGGTCCCCAAAGCACAA 1151
Query 1436 CCAATGCCATACTTTGATCGACCATTCATTCCAAGAAG 1473
||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CCAATGCCATACTTTGATCGACCATTCATTCCAAGAAG 1189
Score = 771 bits (417), Expect = 0.0
Identities = 548/610 (90%), Gaps = 13/610 (2%)
Strand=Plus/Plus
Query 107 TTATCTTCGATGGAGTCGTTGACATTGAAGAATGGGAAAGCAGGGACTCCGGTGAAGGAT 166
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 12 TTATCTTCGATGGAGTCGTTGACTTTGAAGAATGGGAAACCAGTGACTCCGGTGAAGGAT 71
Query 167 CGGAGCAAGTTTCAGTCCAA---TCAAAAGATTTCCAGATCATCGGAGAATGCAAACCCT 223
|||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||
Sbjct 72 CGGAGCAAGTTTCAGTCCAAGGTTCAAGAGAATTCCAGATCGTCGGAGAATGCAAACCCT 131
Query 224 AACATTTCACAAGCGAGTCCTTCTAAATCACCGCTCATGAAATCTGCGAAGAAATCAGCG 283
||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||| |||
Sbjct 132 AACATTTCACACGCGAGTCCGGCTAAATCTCCGCTCACGAAATCTGCGAAGAAATCGGCG 191
Query 284 CAGAAGAATCCGAGTCCGAGCCCT---AAACCTACCCAGGCGGTTTTCTCTCCCCGGAAT 340
|||||||||| |||||| | |||| ||||||| |||||||||| |||||||||||||
Sbjct 192 CAGAAGAATCAGAGTCCAAACCCTAAAAAACCTAGTCAGGCGGTTTCCTCTCCCCGGAAT 251
Query 341 CGGATCAGAGAGAGGAAGTTTGTTGTGGTGGCGAAGAAGAATTCGAGGAAAGGGAAGAAG 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CGGATCAGAGAGAGGAAGTTTGTTGTGGTGGCGAAGAAGAATTCGAGGAAAGGGAAGAAG 311
Query 401 GAGCCAGCGATTACAGAATCCAAGGCAGCTGAGATAGATTGTAAATGCGGAGAGAGGAAG 460
|| |||||| |||||||||| || | ||||||||||||||||||||||| |||||||||
Sbjct 312 GATCCAGCGGTTACAGAATCGAAAGTTGCTGAGATAGATTGTAAATGCGGGGAGAGGAAG 371
Query 461 AAGGGGAACATGAAGTGTGTTTGTGTTGCATATGAAACTCTGCGTGCTTCGCAAGAGGAG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 AAGGGGAACATGAAGTGTGTTTGTGTTGCATATGAAACTCTGCGTGCTTCGCAAGAGGAG 431
Query 521 TTCTTCAAAAATCGAATTGAATCAGAGGAGGATAAGG-AAGCTTTGGAGGAATGCTGTAA 579
|||||||||||||||||| ||||||||||||| |||| || |||||||||||| |||||
Sbjct 432 TTCTTCAAAAATCGAATTCAATCAGAGGAGGAAAAGGGAAA-TTTGGAGGAATGTTGTAA 490
Query 580 TCTCGGA-AATGGCGATGAACTAGAAGGAAAAGAATCTGGAGAACCGGAGAAAACAGGCG 638
||||||| || | || | || ||| || ||| || ||||||||||| | |||||
Sbjct 491 TCTCGGACAAAAT-GTTGGA---GATGGAGGAGGATCCGGGGAACCGGAGAACATAGGCG 546
Query 639 TTTCCACAATGAAGAGATCAAGAGCTAAGGTGGTGGAAGAAGCACGGCAAAGTGTGCCTG 698
||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct 547 CTTCTACAATGAAGAGGTCAAGGGCTAAGGTGGTTGAAGAAGCACGGCAAAGTGTGGCTG 606
Query 699 TATCTGGTAA 708
|||||| |||
Sbjct 607 TATCTGCTAA 616
Score = 267 bits (144), Expect = 3e-70
Identities = 154/159 (97%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1563 AAGGTCGAGCAAACATCCAACTGCACCACGAGATCCCAAGTTTCACATACCGCAACACAA 1622
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1187 AAGGTCGAGCAAACATCCAACTGCACCACAAGATCCCAAGTTCCACATACCGCAACACAA 1246
Query 1623 GAAGATCAGATGCTGCAGTTCATCTTCTTGGAGTGAAACTGGCTCCTGCATGAGCGATTT 1682
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1247 GAAGATCAGATGCTGCAGTTCATCTTCTTGGAGTGAAGCTGGCTCCTGCATGAGCGATTT 1306
Query 1683 CCAATATCAGTTTCTCTAGAAAGCTTCTTTTGGATTTAC 1721
|||||||||||||||||| |||||||||||||| |||||
Sbjct 1307 CCAATATCAGTTTCTCTAAAAAGCTTCTTTTGGGTTTAC 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70695494720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5