BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15520.1

Length=689
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941038 jgi|Araly1|941038|scaffold_601582.1                        778    0.0  


> Ahg941038 jgi|Araly1|941038|scaffold_601582.1
Length=475

 Score =  778 bits (421),  Expect = 0.0
 Identities = 445/457 (97%), Gaps = 0/457 (0%)
 Strand=Plus/Plus

Query  32   GTGAAATGGCGACTGGTAAAACCGTGAAAGATGTTTCTCCTCACGATTTCGTGAAGGCTT  91
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  19   GTGCAATGGCGACTGGTAAAACCGTGAAAGATGTTTCTCCTCACGATTTCGTGAAGGCTT  78

Query  92   ACGCTTCTCACCTCAAGCGATCTGGAAAGATTGAGCTTCCTCTATGGACAGACATTGTGA  151
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  79   ACGCTTCTCACCTCAAGCGATCTGGAAAGATCGAGCTTCCTCTATGGACAGACATTGTGA  138

Query  152  AGACTGGTCGTTTGAAGGAGCTTGCTCCATATGACCCTGATTGGTACTACATTAGAGCTG  211
            ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  139  AGACTGGTCGTTTGAAGGAGCTTGCTCCATACGACCCTGATTGGTACTATATTAGAGCTG  198

Query  212  CTTCTATGGCCAGAAAGATTTACTTGAGAGGAGGTCTTGGTGTTGGTGCTTTCAGAAGAA  271
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  199  CTTCTATGGCCAGAAAGATTTACCTGAGAGGAGGTCTTGGTGTTGGTGCTTTCAGAAGAA  258

Query  272  TTTATGGAGGTAGCAAAAGAAATGGAAGTCGACCACCACATTTCTGTAAGAGCAGTGGTG  331
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  TCTATGGAGGTAGCAAAAGAAATGGAAGTCGACCACCACATTTCTGTAAGAGCAGTGGTG  318

Query  332  GTATTGCTCGCCATATTCTCCAACAGTTGGAGACAATGAGCATTGTCGAGCTTGACACTA  391
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  319  GTATTGCTCGCCATATTCTCCAACAGTTGGAGACAATGAGCATTGTCGAGCTCGACACTA  378

Query  392  AAGGAGGGAGAAGAATCACTTCGAGCGGTCAACGGGATTTGGATCAGGTTGCTGGGCGTA  451
            ||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct  379  AAGGAGGAAGAAGAATCACTTCAAGCGGCCAACGGGATTTGGATCAGGTCGCTGGACGTA  438

Query  452  TTGCAGCTGAATCATGAAGAGCTGTTGTTCTCCTTAT  488
            |||||||||||||||||||||||||||||||||||||
Sbjct  439  TTGCAGCTGAATCATGAAGAGCTGTTGTTCTCCTTAT  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25313616888


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5