BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15530.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941040 jgi|Araly1|941040|scaffold_601584.1 1177 0.0
> Ahg941040 jgi|Araly1|941040|scaffold_601584.1
Length=809
Score = 1177 bits (637), Expect = 0.0
Identities = 748/802 (93%), Gaps = 6/802 (1%)
Strand=Plus/Plus
Query 194 CTGTCTCAACAATGGCGTCATTGTCGGTACCTTGCGTCAAGATCTGTGCTCTGAACAGGC 253
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 11 CTGTCTCAACAATGGCGTCATTGTCGGTACCTTGCGCCAAGATCTGTGCCCTGAACAGGC 70
Query 254 GGGTCGGATCTCTCCCTGGAATCTCTACTCAAAGATGGCAGCCGCAACCCAATGGGATCT 313
|||||||| |||| ||||||||||| |||||| ||| |||||||||||||||||| ||||
Sbjct 71 GGGTCGGAACTCTTCCTGGAATCTCGACTCAACGATCGCAGCCGCAACCCAATGGCATCT 130
Query 314 CCTTTCCCTCCGATGTTTCTCAGAATCATTCTGCATTCTGGAGGTTGCGTGCAACAACTA 373
||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 131 CCTTTCCCTCCCATGTTTCTCAGAATCAGTCTACATTCTGGAGGTTGCGTGCAACAACCA 190
Query 374 ATGAGGTTGTTTCTAACTCCACTCCAATGACTAATGGTGGGTATATGAACGGAAAAGCGA 433
||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 191 ATGAGGTTGTTTCTAACTCTACCCCAATGACTAATGGTGGGTATATGAACGGAAAAGTGA 250
Query 434 AAACCAATGTTCCTGAACCCGCCGAGCTCTCTGAATTTATGGCTAAAGTCTCTGGTCTTC 493
||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 251 AAACCAATGATCCCGAACCCGCCGAGCTCTCTGAATTTATGGCTAAAGTCTCAGGTCTTC 310
Query 494 TTAAGCTTGTGGATTCAAAAGACATAGTGGAACTTGAACTAAAGCAGCTCGACTGTGAGA 553
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 311 TTAAGCTTGTGGATTCAAAAGACATAGTGGAACTTGAACTGAAGCAACTCGACTGTGAGA 370
Query 554 TCGTTATTCGAAAGAAGGAAGCTTTACAGCAAGCTGTACCACCAGCTCCAGTTTATCACT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCGTTATTCGAAAGAAGGAAGCTTTACAGCAAGCTGTACCACCAGCTCCAGTTTATCACT 430
Query 614 CAATGCCTCCTGTAATGGCAGACTTTTCAATGCCTCCAGCTCAACCAGTGGCTCTTCCTC 673
| ||||||||| |||| ||||| | |||||||||||||||||||||||||||| |||||
Sbjct 431 CGATGCCTCCTCCAATGACAGACCTCTCAATGCCTCCAGCTCAACCAGTGGCTCCTCCTC 490
Query 674 CTTCTCCTACTCCTACCTCAACGCCTGCAACAGCAAAACCAACATCCGCCCCATCCTCGT 733
|||||||| ||||| ||||||| ||||||||||||||||||||| || |||||||||| |
Sbjct 491 CTTCTCCTCCTCCTTCCTCAACCCCTGCAACAGCAAAACCAACAACCACCCCATCCTCAT 550
Query 734 CTCATCCTCCACTCAAGAGTCCCATGGCTGGTACTTTCTATAGATCTCCTGGACCCGGTG 793
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 551 CTCATCCTCCACTCAAGAGTCCTATGGCTGGTACTTTCTACAGATCTCCTGGACCTGGTG 610
Query 794 AACCCCCTTTTGTAAAGGTTGGAGATAAGGTACAGAAGGGTCAAATTGTTTGTATTATCG 853
|||| |||||||| ||||||||||| ||||| ||||| |||||| ||||||| |||||||
Sbjct 611 AACCACCTTTTGTCAAGGTTGGAGACAAGGTGCAGAAAGGTCAAGTTGTTTGCATTATCG 670
Query 854 AAGCTATGAAACTGATGAACGAGATTGAGGCTGAGAAGTCAGGAACCATCA-TGGAACTA 912
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 671 AAGCTATGAAACTGATGAACGAGATTGAGGCTGAGAAGTCAGGAACCATCACTG-AATTA 729
Query 913 CTGGCTGAAGATGGAAAACCAGTCAGCGTTGACACGCCTCTTTTTGTCATCGC-ACCTTG 971
||||||||||||||||||||||| ||| ||||||||||||| ||||||||| | |||||
Sbjct 730 CTGGCTGAAGATGGAAAACCAGTTAGCATTGACACGCCTCTGTTTGTCATC-CTACCTT- 787
Query 972 AAA-CGAAGAAGGATCCTTTTA 992
||| |||||||| |||||||||
Sbjct 788 AAATCGAAGAAGTATCCTTTTA 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5