BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15550.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488399 jgi|Araly1|488399|fgenesh2_kg.6__1533__AT5G15550.1 2412 0.0
> Ahg488399 jgi|Araly1|488399|fgenesh2_kg.6__1533__AT5G15550.1
Length=1525
Score = 2412 bits (1306), Expect = 0.0
Identities = 1453/1526 (95%), Gaps = 1/1526 (0%)
Strand=Plus/Plus
Query 1 CATCGCCTCAAGGCAGAACCCTAATTTATCTCCGCGTCTTCTTTTTGCTCAGTAACAGGC 60
||||||||| || |||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1 CATCGCCTCGAGCCAGAACCCTAATTTATCTCCGCGTCTTCTTCTTGCTCCGTAACAGGC 60
Query 61 CATCGGAGAAGTTAAGAGGCTAAAATGGATATCGACGGAGAAGATGTATCTAGAAGACTT 120
|||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||
Sbjct 61 CATCGGAGAAGTTAAGAGGCAAAAATGGATGTCGACAGAGAAGATGTTTCTAGAAGACTT 120
Query 121 CACGTTAAGTTCGTGACGAAGCTTGACTCTCCCTTCAAAGTTCCGGTCAACTCCGTCGCA 180
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 121 CACGTCAAGTTCGTGACGAAGCTTGACTCTCCGTTCAAAGTTCCGGTCAATTCCGTCGCC 180
Query 181 ATCCCTTCTAATGTCACTCGTCTCGGCCTCTCTTCCATCGTCAATTCTATTATCGAATCC 240
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 181 ATCCCTTCCAATGTCACTCGTCTCGGTCTTTCTTCCATCGTCAATTCTATTATCGAATCC 240
Query 241 GAGAATCCAGAGTGGAAAACTGAGCCGTTTGATTTCCTTATTGATGGGGAGCTTATTCGG 300
|| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 241 GATAATCCTGAGTGGAAAACTGAGCCATTTGATTTCCTGATTGATGGGGAGCTTATTCGG 300
Query 301 ATGTCACTCGAAGAGTTTCTTCTTGCAAAGGGAATATCGGCGGAGCGTACTCTTGAAATC 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGTCACTCGAAGAGTTTCTTCTAGCAAAGGGAATATCGGCGGAGCGTACTCTTGAAATC 360
Query 361 GAATACATAAGGGCTGTGACACCACGGAAGGAAGAAGAACCCTCCTTGCATGATGATTGG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAATACATAAGAGCTGTGACACCACGGAAGGAAGAAGAACCCTCCTTGCATGATGATTGG 420
Query 421 GTCAGTGCGGTTAATGGTTCTTCTCCCAGGTTCATTTTGACTGGGTGCTATGACGGATTA 480
||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 421 GTCAGTGCGGTGAATGGTTCTTCTCCCAGGTTCATTTTGACTGGATGCTATGACAGTTTA 480
Query 481 GGAAGGGTATGGAGTTCGGCTGGATCGTGTTCACACATATTAGAAGGCCACTCCGGGGCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GGAAGGGTATGGAGTTCGGCTGGATCGTGTTCACACATATTAGAAGGCCACTCTGGGGCT 540
Query 541 ATCTCCTCTGTTGCTTTAGTTAATTCCAACGATGCAGAAACTGTTACTGTAGCCACTGCC 600
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 541 ATCTCTTCTGTTGCTTTAGTTAATTCCAATGATGCAGAAACTGTTACTGTAGCTACTGCC 600
Query 601 TCTAAAGATCGGACATTGAGATTGTTTAAGTTTGATCCAGCTGAGTCTGTTGACTCTACT 660
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 TCTAAAGATCGTACTTTGAGATTGTTTAAGTTTGATCCAGCTGAATCTGTTGACTCTACT 660
Query 661 ACGAAAGTAAGGGCATACAAGATATTGCGTGGACACAAGGCGTCAGTTCAAAGTGTTTCA 720
|| ||||| ||||| || |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 661 ACAAAAGTTAGGGCGTATAAGATATTACGTGGACACAAGGCGTCAGTGCAAAGTGTTTCA 720
Query 721 GCTCAGAAATCCGGAAACATGGTTTGCTCGAGTTCATGGGATTGCACCATCAATTTATGG 780
|||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 721 GCTCAGAAATCCGGGAACATGGTTTGCTCGAGCTCATGGGATTGCACGATCAATTTGTGG 780
Query 781 AACACAAATGAATCTACTTCAGAAGGGGAGTCAGTATCAGTAAAGAAAAGAAAAGGAAAT 840
||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 781 AACACAAATGAGTCTAATTCAGAAGGGGAGTCAGTATCAGTGAAGAAAAGAAAAGGGAAT 840
Query 841 AATCAGGCCGAGGAATCTCAGTCAGAGGGAGAGGCAGTGACTTCTTTGGTTGGACACACA 900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 AATCAGGCCGAGGAATCTCAGTCAGAGGGAGAGGCGGTGACTTCTTTGGTTGGACACACA 900
Query 901 CAGTGTGTATCATCAGTTGTTTGGCCAGAGCATGATGTAATTTATTCCTCTTCGTGGGAC 960
|||||| | ||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 901 CAGTGTATCTCATCAGTTGTTTGGCCAGAGTATGATGTAATTTATTCATCTTCATGGGAC 960
Query 961 CATTCCGTTAGGAGATGGGATGTTGAGACAGGGAAAGATTCTTTGAACTTGTTCTGTGGA 1020
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CATTCCGTAAGGAGATGGGATGTTGAGACAGGGAAAGATTCTTTGAACTTGTTCTGTGGA 1020
Query 1021 AAAGCTCTCAACACGGTAGATGTTGGTGGTGAAAGTTCTGCCCTTATAGCTGCTGGTGGC 1080
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1021 AAAGCTCTCAACACGGTGGATGTTGGTGGTGAAGGTTCTGCCCTTATAGCTGCTGGTGGA 1080
Query 1081 TCAGATCCAATCCTTAGAGTATGGGATCCTCGTAAGCCAGGAACATCCGCTCCCGTGTTT 1140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 TCAGATCCAATCCTTAGAGTATGGGATCCTCGTAAGCCAGGAACATCGGCTCCCGTGTTT 1140
Query 1141 CAGTTCTCTTCACACTCATCATGGATTTCCGCCTGTAAGTGGCACAAAAGCTCTTGGTTT 1200
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 CAATTCTCTTCACACTCATCATGGATTTCCGCCTGTAAATGGCACAAAAGCTCTTGGTTT 1200
Query 1201 CACTTGCTCTCCGCTTCCTACGACGGCAAAATCATGCTCTGGGATCTCAGAACCGCTTGG 1260
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1201 CACTTGCTCTCCGCTTCCTATGATGGCAAAATCATGCTCTGGGATCTCAGAACCGCTTGG 1260
Query 1261 CCTTTGTCAGTAATTGATACACACAATGACAAGGTTTTATCTGCTGACTGGTGGAAAGGA 1320
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCTTTGTCAGTAATCGATACACACAATGACAAGGTTTTATCTGCTGACTGGTGGAAAGGA 1320
Query 1321 GAGAGTGTAGTCAGCGGAGGAGCAGACTCTAACTTGCGAATTTCTTCCGGAATCGCAATT 1380
||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 GAGAGTGTAATCAGTGGAGGAGCAGACTCTAACTTGCGAATTTCTTCCGGAATTGCAATT 1380
Query 1381 TCTTAAAAGAAACACAAACGATTCATGATCCTGGAATGAGACTGTTGTAAGTTCTGCTGA 1440
||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||||
Sbjct 1381 TCTTAAAAGAAACACCAATGATTCACGATCTTGGAATGAGACTGTTGTAAGTTCTGCTGA 1440
Query 1441 ATAGAGCTTATTGTCTTCAAGGTTGTATACTCTTCATATTCCGAAATGTTAAATCTTAAT 1500
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGAAAGCTTATTGTCTTCAAGGTTGTATACTCTTCATATTCCGAAATGTTAAATCTTAAT 1500
Query 1501 TATACTTTTGGTGGGAAGCAAATTTT 1526
|||| |||||||||||||||| ||||
Sbjct 1501 TATATTTTTGGTGGGAAGCAA-TTTT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5