BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15560.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893466 jgi|Araly1|893466|Al_scaffold_0006_1462 734 0.0
> Ahg893466 jgi|Araly1|893466|Al_scaffold_0006_1462
Length=609
Score = 734 bits (397), Expect = 0.0
Identities = 494/539 (92%), Gaps = 13/539 (2%)
Strand=Plus/Plus
Query 168 AAGAGAGGATGATGAGAGCAATATAGAAGA-ATTTATCAAATTCAATAGCAAAGAACAAG 226
|||| | ||| |||||||||| |||||||| | | |||||| ||||| ||||||||||||
Sbjct 76 AAGA-ATGATAATGAGAGCAACATAGAAGAGA-TGATCAAACTCAATTGCAAAGAACAAG 133
Query 227 ATATTTCAAATG---TAACCAGTAAACAAAAAGACAAGGCAACAACAGAAGATGATGACG 283
|||||||||||| ||| ||||||||| |||| || |||||| |||||||||||||
Sbjct 134 ATATTTCAAATGTAATAAAGAGTAAACAAGAAGAAAAAGCAACAGTTGAAGATGATGACG 193
Query 284 ATGATGTGAAGGAGATAATACAAGACGATATAAGCATTTGTTGTCGTTCAGAGGCGAGCA 343
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 ATGATGTGAAAGAGATTATACAAGACGATATAAGCATTTGTTGTCGTTCAGAGGCGAGCA 253
Query 344 ACAACAGCATCTCTTCTTTCACATTCCCCATACTGCATAACGAAGAAGATGAAAGTGTCA 403
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 254 ACAACAGCATCTCTTCTTTCACATTCCCCATACTGCATAACGAAGAAGATGGAAGTGTCA 313
Query 404 CAATGCCGTCGTTAGAAACCATATGGAACGTTTACGATAACCAGCTATTTTCAGAGTTGT 463
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 314 CAATGCCGTCGTTGGAAACCATATGGAACGTTTACGATAACCAACTATTTTCAGAGTTGT 373
Query 464 CTCAGCCGC-AGAAGCAGCCGCA-G--CCACGACCAGAACAACAATTTTATTTCATCCCA 519
||||||||| | ||||| || || | |||| |||| |||||||||||||||||||||||
Sbjct 374 CTCAGCCGCCA-AAGCAACCACAAGGTCCACAACCACAACAACAATTTTATTTCATCCCA 432
Query 520 GCAACTCACACTCTAGCTCAGCTACCACCACAAAGGAAGTCGTTGTTGTCAAAGCAAACG 579
||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 433 TCAACTCAGACTCTACCTCAGCTACCGCCACAAAAGAAGTCGTTGTTGTCAAAGCAAACG 492
Query 580 TCTGAAACGCAATCCCAAAAGGTTTTTATAAACCGCTGGTTCTCTTGCTTTAATTTTATC 639
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 493 TCTGAAACGCAATCCCAAAAAGTTTTTATAAACCGCTGGTTCTCTTGCTTTAATTTTATT 552
Query 640 ATCCATTTCGACGTGATTGAATCAAGAAATAGAAGAAGGAAGAAAAAAGGAAAGACTAG 698
|||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||
Sbjct 553 ATCCATTTCGACGTGATTGATTCAAGAAGTAGAAGAAGGAA-AAAAA-GGAAAGACTAG 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5