BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15570.1
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941044 jgi|Araly1|941044|scaffold_601588.1 1744 0.0
> Ahg941044 jgi|Araly1|941044|scaffold_601588.1
Length=1186
Score = 1744 bits (944), Expect = 0.0
Identities = 1117/1198 (93%), Gaps = 21/1198 (2%)
Strand=Plus/Plus
Query 212 AAAGTTGTAATAAAGTTTGAATATGATCAATGGAGGTGGAGAGGGTGGAAGTCAGCGGAG 271
||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1 AAAGTTGTAATAAAGGTTGAATATGACCAATGGAGGCGGAGAGGGTGGAAGTCAGCGGAG 60
Query 272 AGAACTACAAGGGAAAAGAAGTATGTCTCGTGGCAATGATTTTGCGTACGCCCTAGCTAG 331
|||||||||||||||||||||||| |||||||||| |||||||||||||||| | | |||
Sbjct 61 AGAACTACAAGGGAAAAGAAGTATTTCTCGTGGCAGTGATTTTGCGTACGCCGTCGTTAG 120
Query 332 AATGGCCACGGCGCAGATATGCGAGAGCGTTGAGATTAACAGTTACCAGGAATCATCACA 391
||||||| |||||||||||||||||||||||||||||| |||||| |||| | ||||||
Sbjct 121 AATGGCCGCGGCGCAGATATGCGAGAGCGTTGAGATTAGCAGTTATCAGG-A--ATCACA 177
Query 392 GTCACGCGAAGGTTTGAGATTCAGTTCTTTTCAAGAGACTGCTCTTGAAACACTAACCGA 451
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 GACACGCGAAGGTTTGAGATTCAGTTCTTTTCAAGAGACTGCTCTTGAAACACTAACTGA 237
Query 452 TGTAGTGATCCAATACATTCAGAACATTGGGAAGACTG-CACAGTTTTATGTTAATATGG 510
||||||||| ||||||||||| |||||||||||||||| || |||| |||| ||||||||
Sbjct 238 TGTAGTGATTCAATACATTCAAAACATTGGGAAGACTGCCA-AGTTCTATGCTAATATGG 296
Query 511 CTGGTAGAGTAGAAAGTAATGCTCTGGATATTGTTCAAGCACTGGAGGATTTGGGATCTG 570
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 CTGGTAGAGTAGAAGGTAATGCTCTGGACATTGTTCAAGCACTGGAGGATTTGGGATCTG 356
Query 571 GATTGGGTTTCGACGGTGCTCATGATGTTGAGCATTGTCTTGCTGATTCTGGTGTCGTCA 630
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGTTGGGTTTCGACGGTGCTCATGATGTTGAGCATTGTCTTGCTGATTCTGGTGTCGTCA 416
Query 631 AGGATATTATTCGTTATACAGGAGAAGCGGAGGAGATTCCTTTCGTTTATTCTCTTCCCC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGGATATTATTCGTTATACAGGAGAAGCGGAGGAGATTCCTTTCGTTTATTCTCTTCCCC 476
Query 691 GTTTCCCTTTTAACAGAGGAAAAAGACCAGCTCCTAGCTTTTCCGATATTGGAGTAGAGC 750
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 477 GTTTCCCTTTTAACAGAGGAAAAAGACCAGCTCCTAGCTTTTCCGGGATTGGAGCAGAGC 536
Query 751 CACCAGATGAGCATATTCCTGTTTGGCTTCCTGCGTTTCCTGAAACCAAGATGTCTAACG 810
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 537 CACCAGATGAGCATATTCCAGTTTGGCTTCCTGCATTTCCTGAAACCAAGATGTCTAACG 596
Query 811 GGTCAGAGGAGATTAATGTTGACAAAATAGAAAGGGATGTGCAGAGTAGAGATAATGGAT 870
|||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 597 GGTCAGAGGAGACTAATGTTGACAAAATAGAAGGGGATGTGCAAAGTAGAGAAAATGGAC 656
Query 871 CATCTTTGAT-GAGTGTGCAGCAGTCTGTCGATGTTGATAGGTTAAAAGTTCAGAAATCC 929
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATCTTTG-TCGAGTATGCAGCAGTCTGTCGATGTTGATAGGTTAAAAGTTCAGAAATCC 715
Query 930 ATGGATCAAAAGGATGTTCAGAAGCCAATAGAGGAACCGGAA--GG----TAACCCATTT 983
||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||
Sbjct 716 ATGGATCAAAAGGATGTTCAGAAACCAACAGAGGAACCGGAACCGGAAGGTAACCCATTT 775
Query 984 CTTGCTGCACCAATTTGGGTTGGAGAGAAGAATGTGTCACTGTCACGTGTGGTT-TGCCC 1042
|||||||||||| ||||||||||||||||||| ||||||| || |||| | | ||
Sbjct 776 CTTGCTGCACCACTTTGGGTTGGAGAGAAGAACGTGTCAC-GT---GTGTA-TCCT-CC- 828
Query 1043 GTCAGAGCTTAGGAAAGAAGAAATTAGTACCAACCACCTTCCTGAGAAACATATGAGCAT 1102
|||||| |||| ||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 829 GTCAGAACTTACGAAAGAAGAAATTAGCACTAACCACGTTCCTGAGAAACATATGAGCAA 888
Query 1103 GAGCCATCACATTCCAGCACTTGAGGCATATGCTCTATCTGATAAGATCAACGACAAGAA 1162
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGGCCATCACATTCCAGCAATTGAGGCATATGCTCTATCTGATAAGATCAACGACAAGAA 948
Query 1163 CAGATTAGCTGGAATGGAAGATGAACAGAAAAGAGATGGTGCAAGAACACAAGGAGCTTT 1222
||||||||||| || |||||||| ||||||||||||||||| ||||||| || |||||||
Sbjct 949 CAGATTAGCTGAAACGGAAGATGGACAGAAAAGAGATGGTGGAAGAACAGAACGAGCTTT 1008
Query 1223 GCTTCGTTTCAAGATTGGGACTCGAAAAGCCTCTGAATGTTGGAAGATAAATCAGTGCTT 1282
||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||
Sbjct 1009 GCTTCGTTTCAAGATTGGGACTCGAAAAGCCTCGGTGTGTTGGACGTTAAATCAGTGCTT 1068
Query 1283 AGAGGAAAAGGGTTGGTTTAAAGAGGATGGAAACAAGAGGGAGAAGAAGGTAGAACGCGA 1342
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1069 AGAGGAAAAGGGTTGGTTTCAAGAGGATGGAGACAAGAGGGAGAAGAAGGTAGAACGAGA 1128
Query 1343 AGAAAAGAGCGAAAGTATTGACGCAGATGTAAAATAGGTATTTTGTCATTTAGAATTT 1400
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AGAAAAGCGCGAAAGTATTGACGCAGATGTAAAATAGGTATTTTGTCATTTAGAATTT 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59268421220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5