BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15580.1
Length=3540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488402 jgi|Araly1|488402|fgenesh2_kg.6__1536__AT5G15580.1 5108 0.0
> Ahg488402 jgi|Araly1|488402|fgenesh2_kg.6__1536__AT5G15580.1
Length=3491
Score = 5108 bits (2766), Expect = 0.0
Identities = 3283/3524 (93%), Gaps = 69/3524 (2%)
Strand=Plus/Plus
Query 1 GAGCTTTGTCATAAATTTTATTTGTAAGAATAATAAAAAATTCAATTACATTCTCTTACA 60
||||||||||||||||||| ||| ||| |||| |||| ||||||||||||||||||||||
Sbjct 1 GAGCTTTGTCATAAATTTTTTTTTTAAAAATACTAAACAATTCAATTACATTCTCTTACA 60
Query 61 ATGTATAAATCTACGGATACACACGAATACATGTGTACACGCATGTGTATGTACGTACT- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGTATAAATCTACGGATACACACGAATACATGTGTACACGCATGTGTATGTACGTACTA 120
Query 120 -ACATA-ACATTATTACATAACCGATGTTTTTATATCGCTTGAAAAGCTTCTCCATATAA 177
||||| ||||||||||| |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 121 CACATATACATTATTACACAACCCATGTTTATATATGGCTTGAAAAGCTTCTCCATATAA 180
Query 178 TTGTAGAGAGAGCTCTTTGCCTTTTACAGACTCACTTCTCACAAAGAACAACAACAACCa 237
|||||||||||||||||||||||||||||||||||||||| |||| ||| || || |||
Sbjct 181 TTGTAGAGAGAGCTCTTTGCCTTTTACAGACTCACTTCTCTCAAATAAC-AC-AC-ACC- 236
Query 238 aaaaaaaaaGATATCATTATTttcttcttctcttctttcttcttcAAGGAACCCTCCAAG 297
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 -GAAAAAAA-A-ACCATTATTTTCTTCTTCTCTTCTTTCTTCTTCAAGGAACCCTCCAAG 293
Query 298 AGAACATACACAGAGAAACCTAATTCCTTGTCTGCTCATAACTTCACAAGTAGCTTTACC 357
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AGAACAGACACAGACAAACCTAATTCCTTGTCTGCTCATAACTTCACAAGTAGCTTTACC 353
Query 358 TTTGTCTTAATGCTGGGttcttctttgtcctcctgtctcttcttcttcttcttctactac 417
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 354 TTTGTCTTAATGCTGGGTTCTTCTATGTCCTCCTGTCTCTTCCTCTTCTTCTTCTACTAC 413
Query 418 ttcctctGAGACACAAAACAGAGGAGATAACAG--AGTGGAGATTTTCAAGAATTGGTAA 475
|||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 414 TTCCCCTGAGACACAAAACAGAGGAGATATCAGAAAGTGGAGATTTTCAAGAATTGGTAA 473
Query 476 TGAGAAGAATCTTAAAGTTCCAAAG-TTTTTCAGAGTCAACAACCTTCTGAGGCCAGAGT 534
|||| |||||||||||||||||||| ||||| |||||||| ||||||| ||| ||||||
Sbjct 474 TGAG-AGAATCTTAAAGTTCCAAAGTTTTTTAAGAGTCAAAAACCTTCAGAGACCAGAGC 532
Query 535 Taagaagacaaagaagt---agaagaagaagaTGTCGGCGAAGCTTTTGTATAACTTGTC 591
| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 533 TCAGAAGACAGAGAAGTAGAAGAAGAAGAAGATGTCGGCGAAGCTTTTGTACAACTTGTC 592
Query 592 GGATGAGAATCCAAATCTGAATAAACAGATTGGATGTATGAATGGGATCTTTCAGGTGTT 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGATGAGAATCCAAATCTGAATAAACAGATTGGATGTATGAATGGGATCTTTCAGGTGTT 652
Query 652 TTACCGGCAACATTATCCACCGAGAC--G-T---GTCACCGGAGATGAGCTCAAGTCTCT 705
||||||||||||||||||||| |||| | | ||| ||||||||||||||||||||||
Sbjct 653 TTACCGGCAACATTATCCACCAAGACGTGTTACCGTCGCCGGAGATGAGCTCAAGTCTCT 712
Query 706 TCCTTCAGGCAAAGCAAGTGACAATGTCGGTGATACCAACATTTC-AGCGGACAAGAAGG 764
||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 713 TCCTTCAGGCAAAACAAGTGACAATGTCGGTGATACCAACATTTCAAG-GGACAAGAAAG 771
Query 765 AAACGGAGAAGAGTAAGAAGAAGAAGACTGCAAAGGAGAAACAGAGGGGAGTATCCTCTG 824
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 772 AAACGGAGAAGAGTAAGAAGAAGAAGGCTGCAAAGGAGAAACAGAGGGGAGTCTCCTCTG 831
Query 825 AATCGTCCTCGAGGTTGTCGTTTTCTTCATCACCATGCTCCTCGAGCTTCTCATCTGCAG 884
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 832 AATCGTCCTCGAGGTTATCCTTTTCTTCTTCACCATGCTCCTCGAGCTTCTCATCTGCAG 891
Query 885 ATATTAGCACCACGGCTTCTCAGTTTGAACAGCCCGG--T--TT-----GAGTAATGGTG 935
||||||||||||||||||| |||||||||||| |||| | || |||||||||||
Sbjct 892 ATATTAGCACCACGGCTTCCCAGTTTGAACAGTCCGGTTTGATTCAAACGAGTAATGGTG 951
Query 936 AGAATCCTGTAAGAGAACCGACCAATGGGTCGCCAAGGTGGGGCGGTTTAATGATGCCAA 995
||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct 952 AGAATCCGGTAAGAGAACCAACCAATGGGTCGCCAAGGTGGGGCGGTTTAACGATGCCGA 1011
Query 996 GTGATATAAGGGAGCTTGTGAGAAGCTCTATTCATAAGGAGACAAGAACCAGAGATGAAG 1055
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GTGATTTAAGGGAGCTTGTGAAAAGCTCTATTCATAAGGAGACAAGAACCAGAGATGAAG 1071
Query 1056 AAGCCTTGTCTCAGCAGCCTAAATCAGCCAGAGCTAATGTGTCTCTTCTCAAAGAATCAT 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1072 AAGCCTTGTCTCAGCAGCCTAAATCAGCCAGAGCTAATGTGTCTCTTCTCAAAGAATCGT 1131
Query 1116 CACCATCTCGGAATTCTAATGAATGGAGTGAGGGACGGAGAGTAGTGAAGCTGAAAGACA 1175
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1132 CACCATCTCGGAATTCTAATGAATGGAGCGAGGGACGGAGAGTAGTGAAGCTGAAGGACA 1191
Query 1176 GTCCTCGGTTCTCTTACGATGAGAGGGAGACGAGAAAGACAGGGGCCAAGTTGAAAGAGA 1235
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1192 GTCCTCGGTTCTCTTACGATGAGAGGGAGACGAGAAAGACAGGCGCCAAGTTGAAAGAGA 1251
Query 1236 CCCCGAGGTTGTCATTAGACAGTAGATCGAATTCCTTTAGGAGCGCAAGATCTAGTTGTT 1295
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1252 CCCCGAGATTGTCATTAGACAGTAGATCGAATTCCTTTAGGAGCGCAAGATCTAGTTATT 1311
Query 1296 CACCAGAGCCACAAGAGCTTGTAA-CAGGTCACAGAAGAACAACATCAAGCGTCGTTGCA 1354
|| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1312 CAACAGAGCCGCAAGAGCTTGTAAGC-GGTCACAGAAGAACAACATCAAGCGTCGTTGCA 1370
Query 1355 AAACTGATGGGTCTTGAAGTAATTCCAGATGAGCCTGTGACCATTCAGAATAGAGAAAAT 1414
|||||||||||||||||||| |||||||| |||||||||| | |||| ||||||||||||
Sbjct 1371 AAACTGATGGGTCTTGAAGTCATTCCAGACGAGCCTGTGATCGTTCATAATAGAGAAAAT 1430
Query 1415 CGCTTCTGCGACTCCCCGAGGCCAACTTCCCGAGTGGAAGTAGATCTACAAAGATCAAGA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 CGCTTCTGCGACTCCCCGAGGCCAACTTCCCGAGTGGAAGTAGATCTACAAAGATCAAGA 1490
Query 1475 GGTTTTGATTCAATCAAAAAGATGATGCCTGCTAAGTTTCCTATGAAAGCATCTCCATGG 1534
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1491 GGTTCTGATTCATTCAAAAAGATGATGACTGCTAAGTTTCCTATGAAAGCATCTCCATGG 1550
Query 1535 GCGCAAGTTGATGGTGCCAAGAACCAAGTCAAAATACCAGACGCTACTACGCTGACAGTT 1594
|||||||| ||| |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1551 GCGCAAGTGGATTGTGCCAAGAACCAAGTCAAAGCAGCAGACGCTACTACGCTGACAGTT 1610
Query 1595 TATGGTGAGATACAGAAGCGGCTTTCACAGCTTGAGTTCAAAAAGTCCGAGAAAGACCTC 1654
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1611 TATGGTGAGATACAGAAGCGGCTTTCACAGCTTGAGTTTAAAAAGTCCGAGAAAGACCTC 1670
Query 1655 AGGGCTCTTAAGCAAATACTCGAAGCAATGGAGAAGACGCAGCAGTTGATAAGCAAAGAT 1714
|| |||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1671 AGAGCTCTTAAGCAAATACTCAAAGCAATGGAGAAGACGCAGCAGTTGATAAGC-AA-A- 1727
Query 1715 GATGATGACAACAAAACTCTATGTTCAAGCAATTTTATGCAGAGAAATA-ATCAGCCAAT 1773
|||||||||||||||| ||||||||||| ||||||||||||||| || | ||||||| ||
Sbjct 1728 GATGATGACAACAAAATTCTATGTTCAACCAATTTTATGCAGAG-AACAGATCAGCCGAT 1786
Query 1774 TCCATCTGCAATAAACACC-TCGTCCATGAATTTTAAATCATCCTCTATCGTGGTTATGA 1832
| ||| || || |||| || ||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1787 TTCATTTGTAACAAAC-CCGTCGTCCAAGAATTCCAAATCTTCCTCTATCGTGGTTATGA 1845
Query 1833 AAGCAGCTACCGCTCCAGTCTTCAAAGACACAGGCATTGCAGGTTCTGCGTCTTTCTCCC 1892
|||||||| | |||||||||||||||| ||||||||| | ||||| || ||||||||||
Sbjct 1846 AAGCAGCTGCAACTCCAGTCTTCAAAGAGACAGGCATTTCTGGTTCCGCCTCTTTCTCCC 1905
Query 1893 CGCGGAATGTTGCTTTACCAAATGTCAAGGTTGGAAACCTGAGGCAAGCCCAGAAAGTCA 1952
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1906 CGCGGAATGTTGCTTTACCAAATGTCAAGGTTGGAAACCTGAGGCAACCCCAGAAAGTCA 1965
Query 1953 TTCCGAGGAAGCAGAGTGCTATGGATGTGACCCCGAGGCCAGGATATTACAAGGGCCAGA 2012
||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||
Sbjct 1966 TTCCGAGGAAGCAGAGTGCCATGGATGAGACCTCGAGGCCAGGATTTTACAAGGGCCAGA 2025
Query 2013 CAGAATCCACAATGAAAAACACTAGTACCAGACCATTACAATCGAAAAGCGACATGGCCA 2072
|||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 2026 CAGATTCCACAATGAAAAACACTAGTACCAGGCCACTACAATTGAAAAGCGACATGGCCG 2085
Query 2073 AGTCAGGGAAGATCCAGAAGCC-TAGTGTCAGCCTAAGAACACCACCAAAGAAGCTTGGG 2131
|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||
Sbjct 2086 AGTCAGGGAAGATCCAGAAGCCGT-GTGTCAGCCCAAGAACACCACCAAAGAAGCTCGGG 2144
Query 2132 TTCGAGAAGCAGTCTCGGCCAACATCCCCAAAACCAGAACTGAACAAGAACCAGAGACAA 2191
||||||||||||||||| |||||||| ||||||||||||| | ||| || ||
Sbjct 2145 TTCGAGAAGCAGTCTCGACCAACATCTCCAAAACCAGAAC----C--GAA-CA-AG---- 2192
Query 2192 CAACTCAGTAGGCAACAGACAGAGTCAGCCTCCCCGAGAAGAAAGCCAGGGATAAAATCT 2251
| | ||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2193 -ATC-CAG-AGACAACAGACAGAGTCAGCCTCCCCGAGAAGAAAACCAGGGATAAAATCT 2249
Query 2252 CGTGGCCTACAGCAATCTGAAGACCGTTTAAGTGATGAAAGCAGTGACTTGAGAAGTCTA 2311
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2250 CGTGGCCTACAGCAATCTGAAGACCGTTTAAGTGAAGAAAGCAGTGACTTGAGAAGTCTA 2309
Query 2312 AGATCTGACAGCAACGTAAGCTTGGCCTCTAACCTTGATACTGAGGTTACAAGCAGGTAT 2371
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 2310 CGATCTGACAGCAACGTAAGCTTGGCCTCTAACCTTGACACTGAGGTTACAAGCAGGTCT 2369
Query 2372 AACTATGAGAGGAACAGCGACATTACGGAGCAGCACACCCCGAAACAAAGGAGTCCAGAC 2431
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2370 AACTATGAGAGGAACAGTGACATTACGGAGCAGCACACCCCGAAACAAAGGAGTCCAGAC 2429
Query 2432 TTGGGAATGAGGTCGCTGTCAAAACCTCTGAAAGTTACAGTGGAGCAGCCCAGCCCGGTG 2491
||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 2430 TTGGGAATGAGGTCGTTGCCAAAACCTTTGAAAGTTACAGTGGAGCAGCCCAGCCCGGTT 2489
Query 2492 TCAGTTCTTGATGTAGCTTTCGACGAAGATGATTCACCATCCCCTGTGCGGAAGATATCC 2551
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2490 TCAGTTCTTGATGTAGCTTTCGATGAAGATGAGTCACCATCCCCTGTGCGGAAGATATCC 2549
Query 2552 ATTGTCTTTAAAGAGGACGAC-AATCTAAGTTCTGAAGAGTCCCATTGGATGAACAAGAA 2610
||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||||| |
Sbjct 2550 ATTGTATTTAAAGAGGACG-CTAATCTAAGTTCTGAAGAGTCCCAGTGGATGAACAAGCA 2608
Query 2611 CAACAACTTATGTAGATCGATTGTGTGGCCTGAGAGTAACACGAGTCTAAAGCAACCTGA 2670
| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||
Sbjct 2609 GAGCAACTTATGTAGATCGATTGTGTGGCCTGAGAGTAACGCGACTCTCAAGCAGCCTGA 2668
Query 2671 TGCTGAACTTACGGAGGGTTTCATGGAAGACGATGCCGAATTCAAAAATGGTGACCACAA 2730
||| ||| ||| ||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2669 TGCCGAAGTTATGGAGGATTTCATGGAAGAAGATGCTGAATTCAAAAATGGTGACCACAA 2728
Query 2731 GTACATCTCAGAGATAATGTTGGCATCAGGGCTTCTACGAGATATCGACTACAGCATGAT 2790
|||| ||||||||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2729 GTACGTCTCAGAGATACTGTTGGCATCAGGGTTTCTGCGAGATATCGACTACAGCATGAT 2788
Query 2791 AAGCATCCAGCTGCACCAAGCACACCTACCGATCAACCCGAGCCTTTTCTTTGTACTGGA 2850
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2789 AAGCATTCAGCTGCACCAAGCACACCTACCGATCAACCCGAGCCTTTTCTTTGTACTGGA 2848
Query 2851 ACAGAACAAGACAAGCAATGTGAGTCTACAGGACAACAAGCACAAAGGCAGAGGATTTGG 2910
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2849 ACAGAACAAGACAAGCAATGTGAGTCCACAGGACAACAAGCACAAAGGTAGAGGATTTGG 2908
Query 2911 ACAACAACAAACGGTGAACCTGGTTGAGAGAAGTAAGAGGAAGCTCATATTTGACACCAT 2970
|||||||||||||||||||||| | |||||||| |||||||||||| |||||||||||||
Sbjct 2909 ACAACAACAAACGGTGAACCTGATAGAGAGAAGCAAGAGGAAGCTCGTATTTGACACCAT 2968
Query 2971 CAACGAGATCTTAGCTCACAGATTCGCTGCAGAAGGGTGTACAAAGCAACCATCCATAAC 3030
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2969 CAACGAGATCTTAGCTCACAGATTCGCTGCAGAAGGGTGTACGAAGCGACCATCCATAAT 3028
Query 3031 ATTATCAATCAGCACGCAAAGGACACACGAAAAAAGTTCAAGAGGGGAAGAGCTTCTGCA 3090
|| |||||||||||||||||||| || || |||||||||||||||| |||||||||||||
Sbjct 3029 ATCATCAATCAGCACGCAAAGGATACCCGTAAAAAGTTCAAGAGGGAAAGAGCTTCTGCA 3088
Query 3091 AACTCTGTGTTCAGAGATTGATCGATTACAAGATAACTCAAAGTGTATCTTGGATGAGGA 3150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3089 AACTCTGTGTTCAGAGATTGATCGATTACAAGATAACTCAAAGTGTATCTTGGATGAAGA 3148
Query 3151 CGATGAAGACCTCATTTGGGAGGATCTGCAAAGCCATGGCATGAACTGGAAGGAGATTGA 3210
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3149 TGATGAAGACCTCATTTGGGAGGACCTGCAAAGCCATGGCATGAACTGGAAGGAGATTGA 3208
Query 3211 AGGAGAGACACCAGGGTTAGTGTTAGACATTGAGAGGCTAATCTTCAAAGACTTGATTGG 3270
|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3209 AGGAGAGATACCAGGGTTAGTGTTAGACATTGAGAGGCTTATCTTCAAGGACTTGATTGG 3268
Query 3271 TGAAGTTGTGACAAGCGAGTTTGCAGCTTTTCCAAGG-ATGCTCAGTGGGCAACCAAGGC 3329
||||||||||| |||||| ||||||||||||| ||| | |||||| ||||||||||| |
Sbjct 3269 CGAAGTTGTGACTAGCGAGGTTGCAGCTTTTCC-AGGAACGCTCAGAGGGCAACCAAGAC 3327
Query 3330 AGCTTTTTCATTGC---TAATATTCCTAATTAATCTTCACTTAGAATTGTAAATCAAGGA 3386
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3328 AGCTTTTCCATTGCTAATAATATTCCTAATTAATCTTCACTTAGAATTGTAAATCAAGGA 3387
Query 3387 ATCTAAATCATCCATTTTACAGAGTTGAGAACATTTGGTTTCTTGGTTCTCTGAACC-CC 3445
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3388 ATCTAAATCATCCATTTTACAGAGTTGAGAACATTTGGTTTCTTGGTTCTCTGAAAAGCC 3447
Query 3446 TTT-CTTATGTTCTTTTCTTAGTTGTTTATGTAAACTTCATAAA 3488
||| | |||||||| ||| || || |||||||||||||| ||||
Sbjct 3448 TTTTCCTATGTTCTCTTCATAATTATTTATGTAAACTTCTTAAA 3491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133696253949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5