BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G15600.1

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488404 jgi|Araly1|488404|fgenesh2_kg.6__1538__AT5G15600.1         676    0.0  


> Ahg488404 jgi|Araly1|488404|fgenesh2_kg.6__1538__AT5G15600.1
Length=539

 Score =  676 bits (366),  Expect = 0.0
 Identities = 415/438 (95%), Gaps = 5/438 (1%)
 Strand=Plus/Plus

Query  62   TTTCAAGAATCGGCGGCGGAATATTCTCGCCGG-AAAATGGGGAAAGCTAGAGGAGTTAA  120
            |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||
Sbjct  4    TTTCAAGAATCGGCGGCGGAGTATTCTCGCCGGAAAAATGGGTAAAGCTAGAGGAGTTAA  63

Query  121  CAGCGGCGGCGGAGAGAGCTCTCTCGGTTATCTTTTTGGTTCCGGCGAGTCTGTTCCCAA  180
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  64   CAGCGGCGGAGGAGAGAGCTCTCTCGGTTATCTTTTTGGTTCCGGCGAGTCTGTTTCCAA  123

Query  181  ACCAAACAAGCCCAAC-GCTAAAACCGGTTTTACCACCACCACGACCACCACAACAACAA  239
            |||||||||| || || ||||| ||| | |||||||| |||||||| ||||||||||| |
Sbjct  124  ACCAAACAAGGCC-ACAGCTAACACCAGCTTTACCACGACCACGACGACCACAACAACCA  182

Query  240  CGGATGGAGCTGGAGGTAGACCCAAGACCACGACCACAACTACAACAACCGGAGATAAAA  299
            | || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  183  CCGACGGAGCTGGAGGTAGACCCAAGACCACGACCACAACCACAACCACCGGAGATAAAA  242

Query  300  ACAAGACAGAGGAGAACTCGGCTGGTGTGAGAGGAAGTCCTAATAATTACTACAGATCAG  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  ACAAGACAGAGGAGAACTCGGCTGGTGTGAGAGGAAGTCCTAATAATTACTACAGATCAG  302

Query  360  ATGGACAAAACTGTGGCAACTTCCTCACGGAACGACCATCTACGAAGGTTCATGCTGCAC  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  ATGGACAAAACTGTGGCAACTTCCTCACGGAACGACCATCTACGAAGGTTCATGCTGCAC  362

Query  420  CAGGTGGAGGATCTTCT-TTGGGTTACTTGTTTGGATCTGGTCCTTGTGGATCTGACAAA  478
            ||||||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||
Sbjct  363  CAGGTGGAGGATCTTCTCTTGG-TTACTTGTTTGGATCTGGTCCATCTGGATCTGACAAA  421

Query  479  TGATTTCTATTTCCACGA  496
            ||||||| ||||||||||
Sbjct  422  TGATTTCAATTTCCACGA  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26076075228


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5