BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15610.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488406 jgi|Araly1|488406|fgenesh2_kg.6__1540__AT5G15610.2 1724 0.0
Ahg927697 jgi|Araly1|927697|scaffold_300154.1 1046 0.0
> Ahg488406 jgi|Araly1|488406|fgenesh2_kg.6__1540__AT5G15610.2
Length=1347
Score = 1724 bits (933), Expect = 0.0
Identities = 1058/1118 (95%), Gaps = 9/1118 (1%)
Strand=Plus/Plus
Query 26 AGGGATTTAGGATTAGCGTTAGAGACTCAGTCG-AGCAGAGAATGACGACGATTGTTCCC 84
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1 AGGGATTTAGGATTAGCGTTAG-GACTCAGT-GAAGCAGAGAATGACGACGATTGTTCCC 58
Query 85 ACCTCCGAAGAAGATCCTTACCTCGCCATTGTTCGTTTCACTTCCCAGCTTGCCTGGGCT 144
|||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 59 ACCTCCGAAGTAGATCCTTATCTCGCCATTGTTCGGTTCACTTCCCAGCTTGCCTGGGCA 118
Query 145 GATGCTGGTCCCGAGGTCGCAGAGCCTGAAGTTTCCAGGCTATGTAAGGAAGCAGAGGA- 203
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 GATGCTGGTCCCGAGGTTGCAGAGCCTGAAGTTTCCAGGCTATGTAGGGAAGCAGAGGAT 178
Query 204 GTCTATAATAAATGGGAAGTGGCTGGATTTGGCAACGTTGATGGTAACTTCAGCTGACTT 263
|| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 GT-TATAATAGATGGGAAGTGGCTGGATTTGGCAACGTTAATGGTAACTTCAGCTGACTT 237
Query 264 GGTATCAGCCAAAATCTCTGAGAAAGATCTTGAGTGTACCTACACCATCATTTGCAACCT 323
||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 238 GGTATCATCCAAGATCCCTGAGAAAGATCTTGAGTGTACCTACACCATAATTTGCAGCCT 297
Query 324 TGTCAAGAATGCGAAC-AGTCCTGAGGAAGTCCTTGAAATGGTGAAAGCTATAGCTGCTA 382
||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 298 TGTCAAGAATGTG-ACAAGTCCTGAGGAAGTCCTTGAAATTGTGAAAGCTATAGCTTCGA 356
Query 383 AGGTTATTCAACAACCAAACGACAAAGCTTCATTGCGTTTGAAGATCCTCTTCAATCTAT 442
||||| ||||||| || || ||||||||||||||||||||||| |||||||||| |||||
Sbjct 357 AGGTTGTTCAACAGCCGAATGACAAAGCTTCATTGCGTTTGAAAATCCTCTTCAGTCTAT 416
Query 443 ATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTATACATGAAAGCTCTGGAACTGG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTATACATGAAAGCTCTGGAACTGG 476
Query 503 CTGTAAACGGGAAGGTTACCGAGTATATTGTACCTTCCTTTAAGAAGATTGACAGCTTCT 562
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 477 CTGTAAACGGGAAGGTTACCGAGTATATTGTGCCTTCCTTTAAGAAAATTGACAGCTTCT 536
Query 563 TGAAAGAGTGGAACATTGACATCAAAGATCAGCGGGAACTATTTCTTGCTATTGCTAAAG 622
|||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 537 TGAAAGAGTGGAACATTGACATCAAAGATCAGCGCGAAGTATTTCTTGCCATTGCTAAAG 596
Query 623 TGCTTAGAGAAAATAAAAGTTTTGCGAAAGAATCCCTCCAGTTTGTGACAAATTATTTGG 682
|||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 597 TGCTGAGAGAAAATAAAAGTTTGGCGAAAGAATCCCTTCAGTTTGTGACAAAATATTTGG 656
Query 683 CAACTTTCTCCAATGAAGATACCCAAGTCCTGAGTGAAGCCAAGGAGGAAGCTGTACGAG 742
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 CAACTTTCTCCAATGAAGATACCCAGGTCCTGAGTGAAGCCAAGGAGGAAGCTGTACGAG 716
Query 743 CAGTTATTGAATTTGTCAAGGCTCCCAGTATATTTCAGTGTGATTTATTAGACCAT-CCA 801
| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 717 CTGTTATTGAATTTGTCAAGGCTCCCAGTATATTTCAGTGTGATTTATTAGAC-ATGCCA 775
Query 802 GCTGTCGCACAGTTGGAGAAGGATCCTAACAATGCACCAGTTTACCAGCTACTGAAGATT 861
|| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 GCCGTTGCACAATTGGAGAAGGATCCTAATAATGCACCAGTTTACCAGCTACTGAAGATT 835
Query 862 TTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTG 921
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTTTTTACTCAGAGGCTGGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTG 895
Query 922 CAAACATACGGACTTGTCGAGGAAGACTGTGTAGCAAAGATGAGGTTGTTGTCCCTAGTT 981
||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct 896 CAAACCTACGGTCTTGTCGAGGCAGACTGTGTAGCAAAGATGAGATTGTTGTCACTAGTG 955
Query 982 GATTTGGCCTCAGATGATTCTGGCAAAATACCGTATGCCTCGATCAAGAACACCCTACAG 1041
||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 956 GATTTGGCCTCAGATGAATCTGGCAAAATACCGTATGTCTCGATCAAGAAAACCTTACAG 1015
Query 1042 GTAAATGACGAGGAGGTTGAATTGTGGGTGGTTAAGGCAATAACTGCAAAATTGGTTGCT 1101
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 GTAAATGACGAGGAGGTTGAATTGTGGGTGGTTAAGGCAATAACTGCAAAATTGGTTGAT 1075
Query 1102 TGTAAGATGGATCAGATGAACCAAGTTGTAATTGTCAG 1139
||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TGTAAGATGGATCAGATGAACCAAGTTGTAATTGTCAG 1113
Score = 372 bits (201), Expect = 5e-102
Identities = 226/238 (95%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 1223 TCAGCCGCTGTGCCGAGCGTGAATTTGGACAAAAGCAATGGCAGTCTCTTCGAACAAAGC 1282
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1110 TCAGCCGCTGTGCCGAGCGTGAATTTGGACAAAAGCAATGGCAGTCTCTTCAAACAAAGC 1169
Query 1283 TAGCAGCTTGGCGGGACAATGTTAGGAATGTAATCAGCACGATCGAATCGAATAAGGCAA 1342
| |||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct 1170 TTGCAGCTTGGCGGGACAATGTTAGGAATGTAATCAGCACAATAGAAGCGAACAAGGCAA 1229
Query 1343 CAGAGGAAGGTACTCAGACATCATCAGCAGCTCAGGGATTGACTGTCCGTTGAAATATAT 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1230 CAGAGGAAGGTACTCAGACATCATCAGCAGCTCAGGGATTGACTGTCCGTTGAAAGATTT 1289
Query 1403 CTCTGAAGAAGAAGCTTCTCAATCTAAAGAGTGATCTGAT-ATTGTCATCTCAAAAGC 1459
||| |||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct 1290 CTCAGAAGAAGAAGCTTCTCAATCTAAAGACTGATTTGATTATTGTCATCTCAAAAGC 1347
> Ahg927697 jgi|Araly1|927697|scaffold_300154.1
Length=1296
Score = 1046 bits (566), Expect = 0.0
Identities = 919/1088 (84%), Gaps = 30/1088 (3%)
Strand=Plus/Plus
Query 67 ATGACGACGATTGTTCCCACCTCCGAAGAAGAT-CCTTACCTCGCCATTGTTCGTTTCAC 125
||||||||||| |||||||| |||||||||||| |||| ||||| |||| || |||||
Sbjct 21 ATGACGACGATCGTTCCCACTTCCGAAGAAGATCCCTT-TCTCGCTGTTGTCCGATTCAC 79
Query 126 TTCCCAGCTTGCCTGGGCTGATGCTGGTCCCGAGGTC-GCAGAGCCTGAAGTTTCCAGGC 184
||||||||| |||||||| |||||||||||||||| | |||||||| ||| || ||||||
Sbjct 80 TTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGG-CTGCAGAGCCAGAAATTACCAGGC 138
Query 185 TATGTAAGGAAGCAGAGGAGTCTATAATAAATGGGAAGTGGCTGGATTTGGCAACGTTGA 244
|||||| ||| || |||||||| ||| ||| | |||||||||||| ||| | |||||||
Sbjct 139 TATGTAGGGAGGCTGAGGAGTCAATAGGAAAAGAGAAGTGGCTGGAATTGTCTACGTTGA 198
Query 245 TGGTAACTTCAGCTGACTTGGTATCAGCCAAAAT-CTCTGAGAAAGATCTTGAGTGTACC 303
|||||||||||||||| ||||||||| |||| || | |||||||||||||||||||||||
Sbjct 199 TGGTAACTTCAGCTGAATTGGTATCATCCAAGATAC-CTGAGAAAGATCTTGAGTGTACC 257
Query 304 TACACCATCATTTGCAACCTTGTCAAGAATGC-GAACAGTCCTGAGGAAGTCCTTGAAAT 362
|||||||||||||||| | |||||||||| | ||| || ||||||||||||||||||||
Sbjct 258 TACACCATCATTTGCAGCATTGTCAAGAAAGTTGAA-AGCCCTGAGGAAGTCCTTGAAAT 316
Query 363 GGTGAAAGCTATAGCTGCTAAGGTTATTCAACAACCAAACGACAAAGCTTCA-TTGCGTT 421
||||||||||||||| | |||||| ||||||||| | |||||||||||| || ||||
Sbjct 317 TGTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCGAGTGACAAAGCTTCACTT-CGTT 375
Query 422 TGAAGATCCTCTTCAATCTATATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTAT 481
||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||||
Sbjct 376 TGAAGATCCTCTTTAATCTCTATAACCTGGTGGACCATCCGTATGCTCGTTTTCAAGTAT 435
Query 482 ACATGAAAGCTCTGGA-ACTGGCTGTAAACGGGAAGGTTACCGAGTATATTGTACCTTCC 540
||||||||||||| | ||| ||||| | ||||||||||| ||||| || || ||||
Sbjct 436 ACATGAAAGCTCTT-ACACTAGCTGTCGATGGGAAGGTTACTGAGTACATAGTTTCTTCT 494
Query 541 TTTAAGAAGATTGACAGCTTC-TTGAAAGAGTGGAACATTGACATCAAAGATCAGCGGGA 599
||||||||| | || | |||| || ||||||||||| |||||||| || |||||| ||||
Sbjct 495 TTTAAGAAGGTCGATAACTTCCTT-AAAGAGTGGAATATTGACATTAAGGATCAGAGGGA 553
Query 600 ACTATTTCTTGCTATTGCTAAAGTGCTTAGAGAAAATAAAAGTTTTGCGAAAGAATCCCT 659
||| |||||||| ||||| || ||||| | |||||| ||||| || | ||| ||||||||
Sbjct 554 ACTCTTTCTTGCCATTGCCAATGTGCTGAAAGAAAACAAAAGCTTGGTGAATGAATCCCT 613
Query 660 CCAGTT-TGTGACAAATTATTTGGCAACTTTCTCCAATGAAGATACCCAAGTCCTG-AGT 717
|||| | |||| || || | ||||||||||||||||| ||||| || |||||| | |
Sbjct 614 TAAGTTCT-TGACGAAGTACCTAGCAACTTTCTCCAATGAGGATACTCAGGTCCTGGA-T 671
Query 718 GAAGCCAAGGAGGAAGCTGTACGAGCAGTTATTGAATTTGTCAAGGCTCCCAGTATATTT 777
|||||||||||||| ||||| || |||||||| ||||||||||| ||| ||| ||| |||
Sbjct 672 GAAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGCTTCCACTATTTTT 731
Query 778 CAGTGTGATTTATTAGACCAT-CCAGCTGTCGCACAGTTGGAGAAGGATCCTAACA-ATG 835
|||||||||||||| ||| | ||||| || ||||| ||||| |||||| |||| | |||
Sbjct 732 CAGTGTGATTTATTGGACT-TGCCAGCCGTAGCACAATTGGAAAAGGATGCTAA-ATATG 789
Query 836 CACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAAT 895
| || ||||||||||| |||||||| |||||||||||||| ||| |||| |||| |||||
Sbjct 790 CTCCGGTTTACCAGCTTCTGAAGATCTTTCTTACTCAGAGACTAAATGCCTACACGGAAT 849
Query 896 TCCAAAATGCGAATTCAGGA-TTTCTGCAAA-CATACGGACTTG-TCGAGGAAGACTGTG 952
|||||||||| ||| | ||| |||||||||| | || ||||||| | || ||||| ||||
Sbjct 850 TCCAAAATGCAAATCC-GGAATTTCTGCAAAGC-TATGGACTTGCT-GATGAAGATTGTG 906
Query 953 TAGCAAAGATGAGGTTGTTGTCCCTAGTTGATTTGGCCTCAGATGATTCTGGCAAAATAC 1012
| | |||||||| |||||||| ||||| || |||||||||||||| |||||||||||||
Sbjct 907 TTTCGAAGATGAGATTGTTGTCACTAGTGGACTTGGCCTCAGATGAATCTGGCAAAATAC 966
Query 1013 CGTATGCCTCGATCAA-GAACACCCTACAGGTAAATGACGAGGAGGTTGAATTGTGGGTG 1071
| || ||||| || || || | | || ||||||||||| || || ||||| || ||| |
Sbjct 967 CTTACGCCTCAATTAAAGA-CGCTCTTCAGGTAAATGAAGAAGATGTTGAGTTATGGATC 1025
Query 1072 GTTAAGGCAATAACTGCAAAATTGGTTGCTTGTAAGATGGATCAGATGAACCAAGTTGTA 1131
|| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1026 GTGAAGGCAATAACTGCAAAATTGATTGATTGTAAGATGGATCAGATGAACCAAGTTGTA 1085
Query 1132 ATTGTCAG 1139
||||||||
Sbjct 1086 ATTGTCAG 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5