BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15630.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488408 jgi|Araly1|488408|fgenesh2_kg.6__1542__AT5G15630.1 2355 0.0
> Ahg488408 jgi|Araly1|488408|fgenesh2_kg.6__1542__AT5G15630.1
Length=1553
Score = 2355 bits (1275), Expect = 0.0
Identities = 1436/1510 (95%), Gaps = 26/1510 (2%)
Strand=Plus/Plus
Query 60 TTCAAATTCCTGAAGAAGAA-AAAGCCTGAGGTTAAACACTGCACCTGGGAATCAATTTC 118
|||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||| ||
Sbjct 1 TTCAAATTCCTGAAGAAGAATAAA--CTGAGGTTAAACACTGTACCT-GGAATCAATATC 57
Query 119 CTTAAATCTTTAC-TCAAAAGATGAGGCTCCTCTTCAGCTTCTGCTTCTTCTTCTTCATG 177
|||| |||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 58 CTTAGATCTTT-CTTCAAAAGATGAGGCTCTTCTTCAGCTTCTGCTTCTTCTTCTTCATG 116
Query 178 ATCATCTTTACCGCAACTGCTTATGATCCATTAGATCCTAGTGGTAACATTACAATCAAA 237
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATCATCTTTAGCGCAACTGCTTATGATCCATTAGATCCTAGTGGTAACATTACAATCAAA 176
Query 238 TGGGATATTATGTCCTGGACGGCAGATGGCTATGTGGCTACGGTAACTATGAACAACTTC 297
|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 177 TGGGATATCATGTCCTGGACAGCAGATGACTATGTGGCTACGGTAACTATGAACAACTTC 236
Query 298 CAAATCTACCGGCACATACAAAACCCTGGTTGGACATTAGGTTGGACATGGGCAAAGAAA 357
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 237 CAAATCTACCGGCACATTCAAAATCCAGGTTGGACATTAGGTTGGACATGGGCAAAGAAA 296
Query 358 GAGGTGATTTGGTCAATGGTTGGTGCACAAACAACAGAACAAGGAGACTGTTCCAAGTTT 417
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 GAGGTGATTTGGTCAATGGTTGGTGCACAAACAACAGAACAAGGAGATTGTTCCAAGTTC 356
Query 418 AAGGGAAATGTACCTCATTGCTGTAAGAAAACCCCTACAGTTGTTGATCTCTTGCCAGGT 477
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 357 AAGGGAAATGTACCTCACTGCTGTAAGAAAACCCCGACGGTTGTTGATCTCTTGCCAGGT 416
Query 478 GTGCCTTATAATCAACAGTTCTCAAACTGTTGCAAAGGAGGTGTAATTGGAGCTTGGGGT 537
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 GTGCCTTATAATCAACAGTTCTCAAACTGTTGCAAAGGCGGTGTAATTGGAGCTTGGGGT 476
Query 538 CAAGATCCATCAGCCGCTGTATCCCAGTTTCAGGTTAGTGCTGGTTTAGCTGGAACTACA 597
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 CAAGATCCATCAGCCGCAGTATCCCAGTTTCAGGTTAGTGCTGGTTTGGCTGGAACTACA 536
Query 598 AACAAGACTGTCAAGCTTCCTAAGAACTTCACTTTGCTTGGTCCCGGCCCTGGTTACACT 657
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 537 AACAAGACTGTCAAGCTTCCTAAGAACTTCACTTTGCTTGGTCCCGGGCCTGGTTACACT 596
Query 658 TGCGGTCCTGCCAAAATCGTGCCCTCTACCGTTTTTCTCACAACTGACAAACGGCGAAAA 717
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 TGCGGTCCAGCCAAAATCGTGCCCTCTACCGTTTTTCTCACAACTGATAAACGGCGAAAA 656
Query 718 ACACAAGCTTTGATGACATGGAATGTTACCTGCACATACTCACAGTTTTTAGCAAGAAAG 777
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 657 ACACAAGCTTTGATGACATGGAATGTTACCTGCACATACTCACAGTTTCTAGCCAGAAAG 716
Query 778 CATCCAAGCTGTTGTGTCTCCTTCTCTTCTTTCTACAACGACACCATAACTCCTTGCCCG 837
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 717 CATCCAAGCTGTTGTGTCTCCTTTTCTTCTTTCTACAACGACACCATAACTCCTTGCCCG 776
Query 838 TCTTGTGCCTGTGGCTGCGAGAACAAAAAGAGCTGCGTCAAGGCTGATTCTAAGATTCTA 897
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 TCTTGTGCCTGTGGCTGCGAGAACAAAAAGGGCTGCGTCAAGGCTGATTCTAAGATTCTA 836
Query 898 ACCAAGAAAGGTCTCAACACACC-AAAAAAGGACAACACTCCTTTGTTGCAATGCACACA 956
|||| |||||||||||||||||| || ||| ||||||||||| ||| |||||||||||||
Sbjct 837 ACCATGAAAGGTCTCAACACACCGAAGAAA-GACAACACTCCATTGCTGCAATGCACACA 895
Query 957 TCACATGTGCCCTGTTAGAGTCCACTGGCACGTTAAAACTAACTACAAAGACTATTGGCG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCACATGTGCCCTGTTAGAGTCCACTGGCACGTTAAAACTAACTACAAAGACTATTGGCG 955
Query 1017 AGTGAAGATAGCAATCACAAATTTCAATTACCGGATGAATCATACACTCTGGACTTTAGC 1076
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 956 AGTGAAGATAGCGATAACAAATTTCAATTACCGGATGAATCATACGCTCTGGACTTTAGC 1015
Query 1077 AATTCAGCATCCAAATCTCAACAATGTGACTCAAGTTTTCAGCTTTGACTACAAACCAGT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AATTCAGCATCCAAATCTCAACAATGTGACTCAAGTTTTCAGCTTTGACTACAAACCAGT 1075
Query 1137 CTCTCCTTACGGATCCATAAATGATACTGGAATGTTCTATGGAACGAAGTTTTACAATGA 1196
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CTCTCCTTATGGATCCATAAATGATACTGGAATGTTCTATGGAACGAAGTTTTACAATGA 1135
Query 1197 TTTATTAATGGAAGCTGGACCTTCAGGGAATGTGCAATCAGAGGTTTTGCTACAGAAAGA 1256
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1136 TCTATTAATGGAAGCTGGACCTTCAGGGAATGTACAATCAGAGGTTTTGCTACAGAAAGA 1195
Query 1257 TCAAAAGACTTTTACTTTCAAGCAAGGTTGGGCTTTTCCTAGAAAAGTTTACTTTAATGG 1316
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1196 TCAAAAGACTTTCACTTTGAAGCAAGGTTGGGCTTTTCCAAGAAAAGTTTACTTTAATGG 1255
Query 1317 TGATGAATGTATGTTACCTCCACCAGATTCATACCCTTTTCTACCAAACTCTGCACAAGG 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGATGAATGTATGTTACCTCCACCAGATTCATACCCTTTTCTACCAAACTCTGCACAAGG 1315
Query 1377 GAACTTTGCTTCGT-TCTCACTCACCATTCTTCTTCTCCT---ATTCATCTCAATATGGT 1432
||||||||||| | | ||||||| |||||||||||| || |||||||||||| ||||
Sbjct 1316 AAACTTTGCTTC-TATGTCACTCAACATTCTTCTTCTTCTTTTATTCATCTCAATCTGGT 1374
Query 1433 GATTTGATCTGATCCTTCTGGGTTTTAAAACACTGAACCAGAACTGTTTTTTGTAAACTC 1492
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1375 GATTTGATCTGATCCTTCCGGGTTTTAAA-CACTGAACCAGAACTGTTTTTTGTAAACTC 1433
Query 1493 ATTGCAAAGATTGTAAAAGaaaaaaaGGAGTTTTGTGAGAGGAAATGATTAGAGATGTGC 1552
|||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1434 ATTGCAAAGATTGTAAAA------------TTTTGTGAGAGGTAATGATTAGAGATGTGT 1481
Query 1553 AAGGCTTTTT 1562
|||| |||||
Sbjct 1482 AAGGGTTTTT 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5