BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15630.1 Length=1681 Score E Sequences producing significant alignments: (Bits) Value Ahg488408 jgi|Araly1|488408|fgenesh2_kg.6__1542__AT5G15630.1 2355 0.0 > Ahg488408 jgi|Araly1|488408|fgenesh2_kg.6__1542__AT5G15630.1 Length=1553 Score = 2355 bits (1275), Expect = 0.0 Identities = 1436/1510 (95%), Gaps = 26/1510 (2%) Strand=Plus/Plus Query 60 TTCAAATTCCTGAAGAAGAA-AAAGCCTGAGGTTAAACACTGCACCTGGGAATCAATTTC 118 |||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||| || Sbjct 1 TTCAAATTCCTGAAGAAGAATAAA--CTGAGGTTAAACACTGTACCT-GGAATCAATATC 57 Query 119 CTTAAATCTTTAC-TCAAAAGATGAGGCTCCTCTTCAGCTTCTGCTTCTTCTTCTTCATG 177 |||| |||||| | |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 58 CTTAGATCTTT-CTTCAAAAGATGAGGCTCTTCTTCAGCTTCTGCTTCTTCTTCTTCATG 116 Query 178 ATCATCTTTACCGCAACTGCTTATGATCCATTAGATCCTAGTGGTAACATTACAATCAAA 237 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 ATCATCTTTAGCGCAACTGCTTATGATCCATTAGATCCTAGTGGTAACATTACAATCAAA 176 Query 238 TGGGATATTATGTCCTGGACGGCAGATGGCTATGTGGCTACGGTAACTATGAACAACTTC 297 |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 177 TGGGATATCATGTCCTGGACAGCAGATGACTATGTGGCTACGGTAACTATGAACAACTTC 236 Query 298 CAAATCTACCGGCACATACAAAACCCTGGTTGGACATTAGGTTGGACATGGGCAAAGAAA 357 ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 237 CAAATCTACCGGCACATTCAAAATCCAGGTTGGACATTAGGTTGGACATGGGCAAAGAAA 296 Query 358 GAGGTGATTTGGTCAATGGTTGGTGCACAAACAACAGAACAAGGAGACTGTTCCAAGTTT 417 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 297 GAGGTGATTTGGTCAATGGTTGGTGCACAAACAACAGAACAAGGAGATTGTTCCAAGTTC 356 Query 418 AAGGGAAATGTACCTCATTGCTGTAAGAAAACCCCTACAGTTGTTGATCTCTTGCCAGGT 477 ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct 357 AAGGGAAATGTACCTCACTGCTGTAAGAAAACCCCGACGGTTGTTGATCTCTTGCCAGGT 416 Query 478 GTGCCTTATAATCAACAGTTCTCAAACTGTTGCAAAGGAGGTGTAATTGGAGCTTGGGGT 537 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 417 GTGCCTTATAATCAACAGTTCTCAAACTGTTGCAAAGGCGGTGTAATTGGAGCTTGGGGT 476 Query 538 CAAGATCCATCAGCCGCTGTATCCCAGTTTCAGGTTAGTGCTGGTTTAGCTGGAACTACA 597 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 477 CAAGATCCATCAGCCGCAGTATCCCAGTTTCAGGTTAGTGCTGGTTTGGCTGGAACTACA 536 Query 598 AACAAGACTGTCAAGCTTCCTAAGAACTTCACTTTGCTTGGTCCCGGCCCTGGTTACACT 657 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 537 AACAAGACTGTCAAGCTTCCTAAGAACTTCACTTTGCTTGGTCCCGGGCCTGGTTACACT 596 Query 658 TGCGGTCCTGCCAAAATCGTGCCCTCTACCGTTTTTCTCACAACTGACAAACGGCGAAAA 717 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 597 TGCGGTCCAGCCAAAATCGTGCCCTCTACCGTTTTTCTCACAACTGATAAACGGCGAAAA 656 Query 718 ACACAAGCTTTGATGACATGGAATGTTACCTGCACATACTCACAGTTTTTAGCAAGAAAG 777 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 657 ACACAAGCTTTGATGACATGGAATGTTACCTGCACATACTCACAGTTTCTAGCCAGAAAG 716 Query 778 CATCCAAGCTGTTGTGTCTCCTTCTCTTCTTTCTACAACGACACCATAACTCCTTGCCCG 837 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 717 CATCCAAGCTGTTGTGTCTCCTTTTCTTCTTTCTACAACGACACCATAACTCCTTGCCCG 776 Query 838 TCTTGTGCCTGTGGCTGCGAGAACAAAAAGAGCTGCGTCAAGGCTGATTCTAAGATTCTA 897 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 777 TCTTGTGCCTGTGGCTGCGAGAACAAAAAGGGCTGCGTCAAGGCTGATTCTAAGATTCTA 836 Query 898 ACCAAGAAAGGTCTCAACACACC-AAAAAAGGACAACACTCCTTTGTTGCAATGCACACA 956 |||| |||||||||||||||||| || ||| ||||||||||| ||| ||||||||||||| Sbjct 837 ACCATGAAAGGTCTCAACACACCGAAGAAA-GACAACACTCCATTGCTGCAATGCACACA 895 Query 957 TCACATGTGCCCTGTTAGAGTCCACTGGCACGTTAAAACTAACTACAAAGACTATTGGCG 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 TCACATGTGCCCTGTTAGAGTCCACTGGCACGTTAAAACTAACTACAAAGACTATTGGCG 955 Query 1017 AGTGAAGATAGCAATCACAAATTTCAATTACCGGATGAATCATACACTCTGGACTTTAGC 1076 |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 956 AGTGAAGATAGCGATAACAAATTTCAATTACCGGATGAATCATACGCTCTGGACTTTAGC 1015 Query 1077 AATTCAGCATCCAAATCTCAACAATGTGACTCAAGTTTTCAGCTTTGACTACAAACCAGT 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 AATTCAGCATCCAAATCTCAACAATGTGACTCAAGTTTTCAGCTTTGACTACAAACCAGT 1075 Query 1137 CTCTCCTTACGGATCCATAAATGATACTGGAATGTTCTATGGAACGAAGTTTTACAATGA 1196 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 CTCTCCTTATGGATCCATAAATGATACTGGAATGTTCTATGGAACGAAGTTTTACAATGA 1135 Query 1197 TTTATTAATGGAAGCTGGACCTTCAGGGAATGTGCAATCAGAGGTTTTGCTACAGAAAGA 1256 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1136 TCTATTAATGGAAGCTGGACCTTCAGGGAATGTACAATCAGAGGTTTTGCTACAGAAAGA 1195 Query 1257 TCAAAAGACTTTTACTTTCAAGCAAGGTTGGGCTTTTCCTAGAAAAGTTTACTTTAATGG 1316 |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1196 TCAAAAGACTTTCACTTTGAAGCAAGGTTGGGCTTTTCCAAGAAAAGTTTACTTTAATGG 1255 Query 1317 TGATGAATGTATGTTACCTCCACCAGATTCATACCCTTTTCTACCAAACTCTGCACAAGG 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 TGATGAATGTATGTTACCTCCACCAGATTCATACCCTTTTCTACCAAACTCTGCACAAGG 1315 Query 1377 GAACTTTGCTTCGT-TCTCACTCACCATTCTTCTTCTCCT---ATTCATCTCAATATGGT 1432 ||||||||||| | | ||||||| |||||||||||| || |||||||||||| |||| Sbjct 1316 AAACTTTGCTTC-TATGTCACTCAACATTCTTCTTCTTCTTTTATTCATCTCAATCTGGT 1374 Query 1433 GATTTGATCTGATCCTTCTGGGTTTTAAAACACTGAACCAGAACTGTTTTTTGTAAACTC 1492 |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 1375 GATTTGATCTGATCCTTCCGGGTTTTAAA-CACTGAACCAGAACTGTTTTTTGTAAACTC 1433 Query 1493 ATTGCAAAGATTGTAAAAGaaaaaaaGGAGTTTTGTGAGAGGAAATGATTAGAGATGTGC 1552 |||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 1434 ATTGCAAAGATTGTAAAA------------TTTTGTGAGAGGTAATGATTAGAGATGTGT 1481 Query 1553 AAGGCTTTTT 1562 |||| ||||| Sbjct 1482 AAGGGTTTTT 1491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63039355475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5