BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15650.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488410 jgi|Araly1|488410|fgenesh2_kg.6__1544__AT5G15650.1 2409 0.0
Ahg477458 jgi|Araly1|477458|fgenesh2_kg.3__159__AT3G02230.1 1314 0.0
Ahg317692 jgi|Araly1|317692|fgenesh1_pm.C_scaffold_3000708 333 2e-90
Ahg926029 jgi|Araly1|926029|scaffold_201590.1 156 5e-37
Ahg942013 jgi|Araly1|942013|scaffold_602557.1 137 2e-31
> Ahg488410 jgi|Araly1|488410|fgenesh2_kg.6__1544__AT5G15650.1
Length=1476
Score = 2409 bits (1304), Expect = 0.0
Identities = 1425/1482 (96%), Gaps = 13/1482 (1%)
Strand=Plus/Plus
Query 1 AAAACTCACCGACGCGATCCGATCTCATCTCTCTCATTTCGAAACCATGGTTGAGCCGGC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCTCACCGACGCGATCCGATCTCATCTCTCTCATTTCGAAACCATGGTTGAGCCGGC 60
Query 61 GAATACTGTTGGTCTTCCGGTGAACCCGACTCCGTTGCTGAAAGATGAGCTCGATATCGT 120
||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 61 GAATACTGTTGGTCTCCCGGTGAATCCGACGCCCTTGCTGAAAGATGAGCTCGATATCGT 120
Query 121 GATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGGCCTTTTCTTCAGCCTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGGCCTTTTCTTCAGCCTTA 180
Query 181 CCATCTGATCATCGTCCAGGACGGAGATCCATCGAAGAAGATCCATGTCCCTGAAGGTTA 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CCATCTGATCATCGTCCAGGACGGAGATCCGTCGAAGAAGATCCATGTCCCTGAAGGTTA 240
Query 241 CGACTACGAGCTCTACAACAGGAACGACATTAACCGAATCCTCGGACCTAAGGCTTCTTG 300
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 241 CGACTACGAGCTCTACAACAGGAACGACATTAACCGGATCCTTGGACCTAAAGCTTCTTG 300
Query 301 TATCTCGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACATGGTGTCTAAGAAGAAGTA 360
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 TATCTCCTTTAAGGATTCTGCTTGTCGGTGCTTTGGGTACATGGTGTCTAAGAAGAAGTA 360
Query 361 TATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCAGGCAAAGCAGTGAA 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 361 TATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCTGGCAAAGCAGTTAA 420
Query 421 CGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGTCTCCCTTTTTCTTCAACAC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGTCTCCCTTTTTCTTCAACAC 480
Query 481 CTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTGGATACCCTTTCAGTCTCCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTGGATACCCTTTCAGTCTCCG 540
Query 541 TGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTTTGGCTCAACATCCCTGACTACGATGC 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 TGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTCTGGCTCAACATCCCTGACTACGATGC 600
Query 601 CCCGACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTATGTGGATGCTGTCATGAC 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCTACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTATGTGGATGCTGTCATGAC 660
Query 661 CATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACTTGGCTTTTGACCGTGATTT 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 CATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACTTGGCTTTCGACCGTGATTT 720
Query 721 GATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGTTACGA 780
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 GATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGA 780
Query 781 CGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCACTTGAGCTTGGGAGTGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCACTTGAGCTTGGGAGTGAA 840
Query 841 GACCGGTTTACCGTATATCTACCACAGCAAAGCGAGCAACCCTTTTGTTAACCTGAAGAA 900
||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 841 GACCGGTTTGCCGTATATCTACCACAGCAAAGCGAGCAACCCTTTTGTGAACTTGAAGAA 900
Query 901 GGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCGTTCTTCCAGAACGCAAAGCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCGTTCTTCCAGAACGCAAAGCT 960
Query 961 ATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGAGCTCTCAAAGATGGTCAAGGA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 ATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGAGCTCTCAAAGATGGTGAAGGA 1020
Query 1021 GAAGTTGAGCTCCTTAGACCCGTACTTTGACAAGCTTGCAGATGCCATGGTTACATGGAT 1080
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1021 GAAGTTGAGCTCCTTAGACCCGTACTTTGACAAGCTTGCAGACGCCATGGTTACATGGAT 1080
Query 1081 TGAAGCTTGGGATGAGCTTAACCCACCAGCAGCCAGTGGCAAAGCTTGAGAGCAGTATGA 1140
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1081 TGAAGCTTGGGATGAGCTTAACCCACCAGCAGCCAATGGCAAAGCTTGAG--CAGTATGA 1138
Query 1141 GCCAAAAA--GAAAAAG-CCACCAAAGTTTTGGTTATTTTTAGCTCAAATTATCGTTACT 1197
|||||||| |||||| |||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 1139 GCCAAAAAAAGAAAAAAACCACCACAGTTTTGGTTATTTT-AGCTCAAATTATCTTTACT 1197
Query 1198 TTTAAATTTCTGATTTTACGAACCTTTCTTGCtttttttACACATTTGAGTAGTTTT-CA 1256
|||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1198 TTTAAATTTCGGATTTTATGAACCTTTCTTGCTTTTTT-ACACATTTGAGTAGTTTTTCA 1256
Query 1257 TCATCAGTACTTTCTCATTGTCCGGTTATGGTTTTTGCATTTGGTTTAAATATCACCGGT 1316
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1257 TCATCAGTACTTTCTCATTGTCCGATTATGGTTCTTGCATTTGGTTTAAATATCACCGGT 1316
Query 1317 TTATTTATAAACAGTGGTGGATTAGTAGTACTATTTTCTGAGtttttttCTTTGTTTCAT 1376
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1317 TTATTTATAAACAGTGGTGGATTTGTAGTACTATTTTCTGAGCTTTTTTCTTTGTTTCAT 1376
Query 1377 TAATAAAAAGGCCTTTTCATAGGTGTTTGCAATTAGt-ttttt--tCCCCCATTAATCAT 1433
||||||||| | |||| |||| ||| ||||||||||| ||||| | || |||||||||
Sbjct 1377 TAATAAAAAAGTCTTT-CATAAGTGATTGCAATTAGTATTTTTGGTTTCC-ATTAATCAT 1434
Query 1434 CGATTATCATAGGTATGTTATGGCTTTAAATGGTATAAGGAA 1475
| ||||||||||||||||| |||| |||| ||||||||||||
Sbjct 1435 CCATTATCATAGGTATGTTTTGGCATTAAGTGGTATAAGGAA 1476
> Ahg477458 jgi|Araly1|477458|fgenesh2_kg.3__159__AT3G02230.1
Length=1381
Score = 1314 bits (711), Expect = 0.0
Identities = 950/1067 (89%), Gaps = 10/1067 (1%)
Strand=Plus/Plus
Query 46 CATGGTTGAGCCGGCGAATACTGTTGGTCTTCCGGTGAA-CCCGACTCCGTTGCTGAAAG 104
||||||||||||||||||||| ||||| |||||||||| | | | ||| ||| |||| |
Sbjct 66 CATGGTTGAGCCGGCGAATACCGTTGGAATTCCGGTGAATCAC-ATTCCATTGTTGAAGG 124
Query 105 ATGAGCTCGATATCGTGATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGGC 164
||||||||||||||||||| || || ||| | |||||||||||||| |||||||||||||
Sbjct 125 ATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGATGTGGAGGC 184
Query 165 CTTTTCTTCAGCCTTACCATCTGATCATCGTCCAGGACGGAGATCCATCGAAGAAGA-TC 223
||||||||||||||||||||||||| |||||||| || |||||||||||||||| | |
Sbjct 185 CTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAAGACCATTG 244
Query 224 CATGTCCCTGAA-GGTTACGACTACGAGCTCTACAACAGGAACGACATTAACCGAATCCT 282
| |||||||||| |||| ||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 245 C-TGTCCCTGAAGGGTT-CGATTACGAACTCTACAACAGGAACGACATCAACCGTATCCT 302
Query 283 CGGACCTAAGGCTTCTTGTATCTCGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACAT 342
|| ||||| ||||| || || || || ||||| ||||||||||| ||||| || |||||
Sbjct 303 TGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGGCTACAT 362
Query 343 GGTGTCTAAGAAGAAGTATATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCC 402
||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 363 GGTCTCCAAGAAGAAGTACATCTTCACTATTGACGACGATTGCTTCGTTGCCAAGGATCC 422
Query 403 ATCAGGCAAAGCAGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGTC 462
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 423 ATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCAAC 482
Query 463 TCCCTTTTTCTTCAACACCTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTGG 522
||| |||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct 483 TCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGTCCGTGG 542
Query 523 ATACCCTTTCAGTCTCCGTGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTTTGGCTCAA 582
||||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||||
Sbjct 543 ATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCTCACGGTCTGTGGCTCAA 602
Query 583 CATCCCTGACTACGATGCCCCGACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTA 642
||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct 603 CATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACACAAGGTA 662
Query 643 TGTGGATGCTGTCATGACCATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACTT 702
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 663 TGTGGATGCTGTCATGACCATCCCAAAGGGAACACTCTTCCCTATGTGTGGCATGAACTT 722
Query 703 GGCTTTTGACCGTGATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCA 762
||| ||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 723 GGCCTTTGACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCA 782
Query 763 GCCTATTGGTCGTTACGACGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCA 822
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 783 GCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTGTGACCA 842
Query 823 CTTGAGCTTGGGAGTGAAGACCGGTTTACCGTATATCTACCACAGCAAAGCGAGCAACCC 882
||| | |||||||||||||| ||||| || || || |||||||||||||| || |||||
Sbjct 843 TTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAGTAACCC 902
Query 883 TTTTGTTAACCTGAAGAAGGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCGTT 942
||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 903 GTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCATTCCTTT 962
Query 943 CTTCCAGAACGCAAAGCT-ATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGAGC 1001
|||||||| ||||||||| | |||||||||| || || ||||| ||||||||||| ||||
Sbjct 963 CTTCCAGAGCGCAAAGCTCA-CGAAAGAAGCTGTGACAGTTCAACAATGCTACATGGAGC 1021
Query 1002 TCTCAAAGATGGTCAAGGAGAAGTTGAGCTCC-TTAGACCCGTACTTTGACAAGCTTGCA 1060
| || ||| |||| ||||||||| | ||| || || || || ||||||||||||||||||
Sbjct 1022 TGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATT-GATCCTTACTTTGACAAGCTTGCA 1080
Query 1061 GATGCCATGGTTACATGGATTGAAGCTTGGGATGAGCTTAACCCACC 1107
|| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1081 GACGCTATGGTCACCTGGATTGAAGCTTGGGATGAGCTTAACCCACC 1127
> Ahg317692 jgi|Araly1|317692|fgenesh1_pm.C_scaffold_3000708
Length=1125
Score = 333 bits (180), Expect = 2e-90
Identities = 443/566 (78%), Gaps = 33/566 (6%)
Strand=Plus/Plus
Query 73 TCTTCCGGTG-AACCCGACTCCGTTGCTGAAAGATGAGCTCGATATCGTGATTCCGACTA 131
|||||| ||| ||||| || || || ||||||||||||| || || ||||| || || |
Sbjct 16 TCTTCC-GTGAAACCC-ACGCCAATGTTGAAAGATGAGCTAGACATTGTGATACCCACCA 73
Query 132 -TCAGAAACCTCGATTTCC-TCGAGATGTGGAG-GCCTTTTCTTCAGCCTTACCATCTGA 188
|| ||||||| || |||| || |||||||| | |||| | || | | ||||||||||
Sbjct 74 TTC-GAAACCTTGACTTCCTTC-AGATGTGGCGACCCTTCT-TTGAACAGTACCATCTGA 130
Query 189 TCATCGTCCAGGACGGAGATCCATCGAAGAAG--ATC--CATGTCCCTGAAGGTTACGAC 244
|||| || || || || ||||| ||| | ||| ||| ||| | || ||||||| ||||
Sbjct 131 TCATTGTTCAAGATGGTGATCCTTCG-A-AAGTCATCAACAT-T-CCAGAAGGTTTCGAC 186
Query 245 TACGAGCTCTACAACAGGAACGACATTAACCGAATCCTCGGACCTAAGGCTTCTTGTATC 304
|||||||||||||||||||||||||| || |||||| | || || ||||| ||||| ||
Sbjct 187 TACGAGCTCTACAACAGGAACGACATCAATCGAATCTTGGGTCCCAAGGCCTCTTGCATT 246
Query 305 TCGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACATGGTGTCTAAGAAGAAGTATATC 364
|| || ||||| |||||||| || ||||| || |||||||| || || |||||||| |||
Sbjct 247 TCCTTCAAGGACTCTGCTTGCCGTTGCTTCGGTTACATGGTCTCCAAAAAGAAGTACATC 306
Query 365 TTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCAGGCAAAGCAG-TGAACGC 423
| |||||||||||| |||||||| ||||| ||||||||| | || |||| || | || ||
Sbjct 307 TACACCATTGATGATGATTGCTTTGTTGCAAAGGATCCAACTGGGAAAG-AGATCAATGC 365
Query 424 TCTTGAGCAACACATCAAGAACCT-TC-TCTGCCCATCGTCTCC-CTTTTTCTTCAACAC 480
|||||||| || ||||||||||| | ||| || ||| | || | ||| ||| |||||
Sbjct 366 GCTTGAGCAGCATATCAAGAACCTCTTATCT-CC-ATCAACCCCGCATTT-CTTTAACAC 422
Query 481 -CTTGTATGATCCTTACCGTGAAGGTGCTGA-TTTCGTCCGTGGATACCCTTTCAGTCTC 538
||| |||||||| ||| | || || || || ||| || |||||||||||||| ||| |
Sbjct 423 ACTT-TATGATCCATACAGAGATGGGGCAGACTTT-GTTCGTGGATACCCTTTTAGTATG 480
Query 539 CGTGAAGGTGTT-TCCACTGCTGTTTCCCATGGTCTTTGGCTCAACATCCCTGACTACGA 597
|| |||||| | ||||| || || ||||| || ||||||||||| |||||||| ||
Sbjct 481 CGCAAAGGTGCCATA-ACTGCGGTATCTCATGGCCTCTGGCTCAACATTCCTGACTATGA 539
Query 598 TGC-CCCGACCCAACTCGTGAAGCCT 622
||| ||| || || || |||||||||
Sbjct 540 TGCTCCC-ACTCAGCTTGTGAAGCCT 564
> Ahg926029 jgi|Araly1|926029|scaffold_201590.1
Length=341
Score = 156 bits (84), Expect = 5e-37
Identities = 90/93 (97%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 716 GATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGT 775
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GATTTGATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGC 218
Query 776 TACGACGATATGTGGGCTGGTTGGTGCATCAAG 808
|||||||| ||||||||||||||||||||||||
Sbjct 219 TACGACGACATGTGGGCTGGTTGGTGCATCAAG 251
Score = 110 bits (59), Expect = 4e-23
Identities = 69/73 (95%), Gaps = 3/73 (4%)
Strand=Plus/Plus
Query 1083 AAGCTTGGGATGAGCTTAACCCACCAGCAGCCAGTGGCAAAGCTTGAGAGCAGTA-TGAG 1141
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 267 AAGCTTGGGATGAGCTTAACCCACCAGCAGCCAATGGCAAAGCTTGAG--CAGTAATGAG 324
Query 1142 CCAAAAAGAAAAA 1154
|||||||||||||
Sbjct 325 CCAAAAAGAAAAA 337
> Ahg942013 jgi|Araly1|942013|scaffold_602557.1
Length=421
Score = 137 bits (74), Expect = 2e-31
Identities = 88/95 (93%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 716 GATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGT 775
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 252 GATTTGATTGGCCCAACAATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTAGC 311
Query 776 TACGACGATATGTGGGCTGGTTGGTGCATCAAGGT 810
||||| || ||||||||||||||||||||||||||
Sbjct 312 TACGATGACATGTGGGCTGGTTGGTGCATCAAGGT 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5