BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15660.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326016 jgi|Araly1|326016|fgenesh1_pm.C_scaffold_6001236 1375 0.0
> Ahg326016 jgi|Araly1|326016|fgenesh1_pm.C_scaffold_6001236
Length=1293
Score = 1375 bits (744), Expect = 0.0
Identities = 1041/1179 (88%), Gaps = 41/1179 (3%)
Strand=Plus/Plus
Query 1 ATGAGAAGAC-G-C-AGCAAAAAGATCAAAACCGAGAACAAC-AGCAATCCAGAAACGTC 56
|||||||||| | | |||||||||| |||||||||||||||| || ||| | | |||||
Sbjct 1 ATGAGAAGACGGCCGAGCAAAAAGAGCAAAACCGAGAACAACAAG-GATCTACACACGTC 59
Query 57 GGAAGAGAGAAACAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATACTT-GAAA 115
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 60 AGAAGAGAGAATCAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATTCTTCG-GA 118
Query 116 GATTGCCTTTGAAATCTGTAGCCAGGTTTCTCACAGTATCCAAGTTATGGGCAACAACTA 175
|||||||| |||||||||||| ||||||||||| ||||||||||| ||||| |||||||
Sbjct 119 GATTGCCTGCGAAATCTGTAGCTAGGTTTCTCACTGTATCCAAGTTGTGGGCCACAACTA 178
Query 176 TACGCAGTCCAGATTTCAGAAAATCTTACCGGGGTGGATCTTCGTCGGAGCCTCGTACCC 235
| |||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||
Sbjct 179 TCCGCAGTCCAGATTTCATCAAATCTTACCCGTTTGGATCTTCGTCGAAGCCTCGTACCC 238
Query 236 TAATCGTTTCCGACCTAAATTTTAAGGAACCAAACCCAAAGT-TGCATTTCTTCAGGCCG 294
||||||||| |||| |||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 239 TAATCGTTTGCGACTTAAATTATAAGGAACCAAACCCAAA-TGTGCATTTCTTCAGGCCG 297
Query 295 ---TC-T-AT-AT---CATCACCGTCTTTTCTATCAAGTCTGACATGTCCGTTCACATAT 345
|| | || || ||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 298 TCTTCTTCATCATCAACATCAACGTCTCTTCTATCACGTGTGACATGTCCGTTCACATAT 357
Query 346 CCTCGGCACGA-AGAGTACTATTATCATCATGTTAATGGATTGATAAGCGTTGGATATGG 404
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCTCGTCAC-ATGGAGTACTATTATCATCATGTTAATGGATTGATAAGCGTTGGATATGG 416
Query 405 TACAGACCAAATCGTAATTAACCCCA-CGACTGGAAAATTCATAACTTTACCAAGACCCA 463
|||||| |||||||||| ||||||| | ||||| || |||||||||||||||| ||| |
Sbjct 417 TACAGAGCAAATCGTAACCAACCCCATC-ACTGGTAAGTTCATAACTTTACCAAAACCTA 475
Query 464 AAACAAGGAGAAAGCTCGTAATAAGTTTTTTCGGGTATGATTCAGTGAGTGATCAATACA 523
|||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 476 GAACAAGGAGAAAGCTCGTAAGAAGTCTTTTCGGGTATGATTCAGTTAGTGATCAATACA 535
Query 524 AAGTGTTGTGCATGACGGAAAGACTGCGTGGCCATCCAGAAGAAGCATCATCTCAACATC 583
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 AAGTGTTGTGCATGACGGAAAGACTGCGTGGCCATCCGGAAGAAGCATCATCTCAACATC 595
Query 584 AAGTGTACACATTGGGAGCTAAACAGAAATCATGGAAAATGATTAATTGTAGCATCCCTC 643
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 596 AAGTGTACACATTGGGAGCTAAAAAGAAATCATGGAAAATGATCAATTGTAGCATCCCTC 655
Query 644 ACCGTCCTTGGTCGTGGAACGCCGTGTGCATAAATGGTGTTGTGTATTACATTGCTAAAA 703
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 656 ACCGTCCTTGGTCGTGGAACGGTGTATGCATAAATGGTGTTGTGTATTACATTGCTAAAA 715
Query 704 CGGGGGAGGGTATGTTTC-GTCGGTGCTTAATGAGATTTGATTTGAAGTCTGACAATTTG 762
|||||| ||| ||||| | | | | ||||||||||||||||||||||||||||| || ||
Sbjct 716 CGGGGGCGGGAATGTTGCAG-CTGAGCTTAATGAGATTTGATTTGAAGTCTGACGATCTG 774
Query 763 GATCTTTGCACTATTTTACCTGAAGAGATTCAAACAAGTCTACATGATTACTTTTTGATC 822
||||||| |||| |||||||||||||||| ||||||||||| |||||| | |||||||
Sbjct 775 GATCTTTTTACTAGTTTACCTGAAGAGATTGAAACAAGTCTATATGATTGCCTTTTGATA 834
Query 823 AACTACAAGGGGAAAGTAGCCATACCCAATCAACCTA-ATTTCTATACATATGATGTGTG 881
|||||| ||||||||||||||||||||| || |||| | | |||||| |||||||||
Sbjct 835 AACTACGAGGGGAAAGTAGCCATACCCACTCGCCCTACAGATA-ATACATGTGATGTGTG 893
Query 882 GGTTATGAATCAGGAAGGTGGAAAAATTGAATGGTTGAAGAATATAACTTTCACTATTAA 941
|||||||||||| |||||||||||| |||||||||||||||| |||| ||||| || |||
Sbjct 894 GGTTATGAATCAAGAAGGTGGAAAACTTGAATGGTTGAAGAAAATAAGTTTCAGTACTAA 953
Query 942 ACCTCGGAAGGGTTTTGTTCGTTATCTATTCGTCACAGGCACTACTCATACGGGTGAGTT 1001
|||| ||||||||| | |||||||| |||||||||||||||||| ||||||||||||
Sbjct 954 ACCTTGGAAGGGTTCA-T--GTTATCTAGTCGTCACAGGCACTACTCCTACGGGTGAGTT 1010
Query 1002 TATTTTGGCACCAACGTC-CTAT-ACCGATGAGTTTTATGTCTTCCATTACAATCCCGAC 1059
|||||||||||||||| | |||| | ||| ||||||||||||||||| ||||||||||
Sbjct 1011 TATTTTGGCACCAACG-CACTATTAT-GATTCGTTTTATGTCTTCCATTGCAATCCCGAC 1068
Query 1060 ATGAATAGTTTTAGAAAGATAAGGGTTCAAGCACCCGGAGTT---AAGTTTAGTTTTGC- 1115
||||| ||||||||||||| | | |||||||||||||||| |||| || || | |
Sbjct 1069 TTGAATTGTTTTAGAAAGATTACGATTCAAGCACCCGGAGTCCCGAAGTATAATTAT-CA 1127
Query 1116 TCAGAAAGCTT-CAGTTGTTTTTTCGGATCACAGTTTAT 1153
||||||| ||| || |||||||||||||| ||| |||||
Sbjct 1128 TCAGAAA-CTTGCATTTGTTTTTTCGGATTACA-TTTAT 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5