BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15720.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941059 jgi|Araly1|941059|scaffold_601603.1 1853 0.0
> Ahg941059 jgi|Araly1|941059|scaffold_601603.1
Length=1135
Score = 1853 bits (1003), Expect = 0.0
Identities = 1093/1137 (96%), Gaps = 4/1137 (0%)
Strand=Plus/Plus
Query 7 GATAAAGATAGTAACCAAGCATGAAAAGTTTGTTGATTTGTCTTGTGTTGTTAGAGCTTG 66
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1 GATAAAGATAGTAACCAAGCATGAAGAGTTTGTTGATTTGTGTTGTGTTGTTAGAGCTTG 60
Query 67 TCTGGTTAGGCAATGGCCAATCTAGAGATCATCAACCTCTTGCTCCAGCTTTCTTTGTCT 126
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGGTTTGGCAATGGACAATCTAGAGATCATCAACCTCTTGCTCCAGCTTTCTTTGTCT 120
Query 127 TTGGAGATTCTTTAGTTGATAGTGGAAACAACAATTACATTCCAACTCTTGCACGAGCTA 186
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TTGGAGATTCTTTAGTTGATAGTGGAAACAACAATTACATTCCAACTCTCGCACGAGCTA 180
Query 187 ATTATTTCCCTTATGGAATTGATTTTGGCTTCCCCACTGGTCGTTTCTGCAATGGCCGTA 246
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 ATTATTTCCCTTATGGAATTGATTTTGGCTTCCCCACTGGCCGTTTCTGCAATGGCCGTA 240
Query 247 CCGTTGTTGATTATGGAGCAACGTACCTCGGCTTGCCATTGGTGCCACCATACTTATCTC 306
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGTTGTTGATTATGGAGCAACGTACCTCGGCTTGCCATTGGTGCCACCATACTTATCTC 300
Query 307 CTTTATCCATTGGGCAAAATGCC-TTACGAGGGGTTAACTACGCATCTGCAGCAGCTGGG 365
||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 301 CTTTATCCATTGGGCAAAACGCCTTTA-GAGGGGTTAACTATGCATCTGCAGCAGCTGGG 359
Query 366 ATTTTAGATGAAACCGGTCGACATTATGGAGCAAGAACTACATTTAATGGACAGATATCG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTTTAGATGAAACCGGTCGACATTATGGAGCAAGAACTACATTTAATGGACAGATATCG 419
Query 426 CAGTTTGAGATTACGATCGAGTTACGCCTCCGGCGTTTCTTTCAAAACCCTGCAGATCTG 485
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 420 CAGTTTGAGATTACAATCGAGTTACGTCTCCGACGTTTCTTTCAAAACCCTGCAGATCTG 479
Query 486 AGAAAGTATCTTGCAAAATCGATAATTGGGATCAATATAGGAAGCAATGACTATATCAAC 545
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 480 AGCAAGTATCTTGCAAAATCGATAATTGGGATCAATATAGGAAGCAATGATTACATCAAC 539
Query 546 AACTACCTTATGCCTGAGAGATACTCCACCAGCCAAACCTACAGTGGAGAAGATTATGCA 605
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 540 AACTACCTTATGCCTGAGAGATACTCCACCAGCCAAATCTACAGTGGAGAAGACTATGCA 599
Query 606 GATCTCTTGATCAAGACTCTCTCAGCTCAAATATCCAGACTATACAACTTAGGTGCAAGA 665
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 600 GATCTCCTGATCAAGACTCTCTCAGCTCAAATATCAAGACTATACAACTTAGGCGCACGA 659
Query 666 AAAATGGTGTTAGCTGGGTCAGGACCATTAGGTTGCATACCTAGTCAGCTATCTATGGTA 725
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 660 AAAATGGTGTTAGCTGGGTCAGGACCATTAGGTTGCATACCGAGTCAATTATCTATGGTA 719
Query 726 A-CTGGCAACAACACCAGCGGGTGTGTGACAAAAATCAACAATATGGTTTCAATGTTCAA 784
| | |||||||||| ||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 720 AGC-GGCAACAACAACAGCGGGTGCGTAACAAAGATCAACAATATGGTCTCAATGTTCAA 778
Query 785 TAGCCGTCTGAAAGATCTAGCAAATACTCTCAACACAACTCTGCCAGGATCTTTCTTTGT 844
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 TAGCCGACTGAAAGATCTAGCAAATACTCTCAACACAACTCTTCCAGGATCTTTCTTTGT 838
Query 845 CTATCAAAACGTCTTTGATCTATTTCATGATATGGTTGTGAATCCTTCTAGATATGGTCT 904
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 CTATCAAAACGTCTTTGATCTATTTCATGATATGGTTGTGAATCCCTCTAGATATGGTCT 898
Query 905 TGTAGTATCAAACGAAGCGTGCTGCGGTAACGGGAGATATGGAGGAGCCTTAACATGCCT 964
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGTAGTATCAAACGAAGCGTGTTGCGGTAACGGGAGATATGGAGGAGCCTTAACATGCCT 958
Query 965 TCCATTGCAGCAACCTTGCTTGGATAGGAATCAATATGTCTTTTGGGATGCATTTCATCC 1024
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 TCCATTGCAGCAACCGTGCTTGGACAGGAATCAATATGTCTTTTGGGATGCATTTCATCC 1018
Query 1025 AACAGAAACTGCCAACAAAATAATAGCTCACAATACCTTCAGCAAGTCTGCAAACTACTC 1084
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AACAGAAACTGCCAACAAAATCATAGCTCACAATACCTTCAGCAAGTCTGCAAACTACTC 1078
Query 1085 CTACCCTATCAGTGTCTATGAATTAGCTAAATTGTAGAGAAATGTATCTCAAAGCTA 1141
|||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||
Sbjct 1079 CTACCCTATCAGTGTCTATGAATTGGCTAAACTGTAGAGATATGTGTCTCAAAGCTA 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5