BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15725.1
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488415 jgi|Araly1|488415|fgenesh2_kg.6__1549__AT5G15725.1 621 1e-177
> Ahg488415 jgi|Araly1|488415|fgenesh2_kg.6__1549__AT5G15725.1
Length=471
Score = 621 bits (336), Expect = 1e-177
Identities = 430/473 (91%), Gaps = 16/473 (3%)
Strand=Plus/Plus
Query 4 GTCAAGTATTGAAGAACTGATAAATACTTTACAAAAGC-AACGCAACTACTTTTCAGTAC 62
||||||| |||||||||||||| ||||||||| ||||| ||||||| ||||||| |||||
Sbjct 1 GTCAAGTGTTGAAGAACTGATATATACTTTACGAAAGCAAACGCAAGTACTTTTAAGTAC 60
Query 63 AAACGACCAAGGATATAATATGAAGAAGACGAGTTTGAAGTTAATGACCCTCGTTTTAGG 122
|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 61 AAACGACCAAAGATATAATATGAAGAAGACAATTTTGAAGTTAATGACCCTCGTTTTAGG 120
Query 123 GTTTTGCTT-CGTCATTTATCTTCTTCAAGGGCCTCGAGGCGGTTCGAGAAATGGAGATC 181
||||| ||| | ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 121 GTTTTTCTTTC-TCATTTATCTTCTTCAAGGGCCTCGAGGCGGGTCGAAAAATGGAGATC 179
Query 182 TCTTGATAGCACGAAAGTTGATATCTCTGGAACCGATTGAAACAAAAAATGCAGCGAGAT 241
||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 180 TCTTGATAGCACGGAAGTTAATAGCTCTGGAACCGATTGAAACAAAAAATGTAGCGAGAT 239
Query 242 CGTTGAAAGATTCAATATCAACAGATTTAGAG-GAAGAGGTTGATCGTCTGATGGAGCAC 300
||||| ||||||||||||| |||||||||||| || |||||||||| ||||||| |||||
Sbjct 240 CGTTGGAAGATTCAATATCGACAGATTTAGAGAGA-GAGGTTGATCATCTGATGCAGCAC 298
Query 301 GAATATCCTTCACCAGTAAAGCCGAGGAAAAGAACTCCGGTTCACAATGGCGTGCGTA-- 358
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 299 GAATATCCTTCACCGGTAAAGCCGAGGAAAAGAACTCCAGTTCACAATGGCGTGCCTATT 358
Query 359 A-T-C-G-TCACTAATTGACCC--TT---GTTCTATTGTTCTTTCAATTAGTAGTTTAAT 409
| | | | |||||||||||||| || ||| |||||||| ||||||||||||||||||
Sbjct 359 AATACTGGTCACTAATTGACCCCCTTCTTGTTTTATTGTTCCTTCAATTAGTAGTTTAAT 418
Query 410 AAGTTTGGTAAAATCATAAAATGGACGTATCCTGTAATGCTGAATATTAGTAT 462
||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 AAGTTTGTTAACATCATAAAATGGACGTATCATGTAATGCTGAATATTAGTAT 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17627882118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5