BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15730.2
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941061 jgi|Araly1|941061|scaffold_601605.1 2259 0.0
> Ahg941061 jgi|Araly1|941061|scaffold_601605.1
Length=1356
Score = 2259 bits (1223), Expect = 0.0
Identities = 1306/1347 (97%), Gaps = 2/1347 (0%)
Strand=Plus/Plus
Query 183 TGGTTTGAAAAATGATATCAAAATGGTGAATAGAAGTGATTTGGTGGTGATTGGCATCTC 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGTTTGTAAAATGATATCAAAATGGTGAATAGAAGTGATTTGGTGGTGATTGGCATCTC 60
Query 243 GGTTGGGCTTGCACTTGGTCTCTTGCTCGCTCTGCTTTTGTTCTTCGCCATAAAATGGTA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTTGGGCTTGCACTTGGTCTCTTGCTCGCTCTGCTTTTGTTCTTCGCCATAAAATGGTA 120
Query 303 CTATGGCCGCTCTCACCTCAGGCGATGCGCTAATGAACAGAATTCCCCGACTCTACCTGT 362
| || |||||||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 121 CAATAACCGCTCTCACCTAAGGCGATGCGCTAATGAACAGGATACCCCGACTCTACCTGT 180
Query 363 TCACACTGCTAAAAGAGG-TGTAGTAATCCCTGATGATAGAGCAAACACAGAATCGTCAC 421
|||||||||||||||||| | ||||||||||||||||||| || ||||||||||||||||
Sbjct 181 TCACACTGCTAAAAGAGGCT-TAGTAATCCCTGATGATAGCGCCAACACAGAATCGTCAC 239
Query 422 AGCCACCTGAGAATGGAGCACCAACTCAACATCAGCCATGGTGGAACAACCACACCAAAG 481
||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||
Sbjct 240 AGCCACCTGAGAATGCAGCACCAACTCAACATCAGCCATGGTGGAACAATAATAACAAAG 299
Query 482 ATCTCACTGTATCTGCATCCGGCATACCTAGATATAACTACAAGGATATTCAGAAAGCAA 541
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 ATCTCACTGTATCTGCATCCGGCATACCTAGATATCACTACAAGGATATTCAGAAAGCAA 359
Query 542 CACAAAATTTCACAACCGTTCTAGGACAAGGATCTTTTGGTCCTGTCTACAAAGCGGTTA 601
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 CACAAAATTTCACAACCGTTCTAGGACAAGGATCTTTTGGTCCTGTGTACAAAGCGGTTA 419
Query 602 TGCCCAATGGAGAATTAGCTGCAGCGAAAGTTCATGGCTCTAATTCAAGTCAAGGAGACA 661
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 TGCCCAATGGAGGATTAGCTGCAGCGAAAGTTCATGGCTCTAATTCAAGTCAAGGAGATA 479
Query 662 GAGAGTTTCAAACCGAGGTATCTTTACTTGGGAGACTGCATCACCGGAATCTTGTGAACT 721
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 480 GAGAGTTTCAAACCGAGGTATCTTTACTTGGGAGGCTGCATCACCGAAATCTTGTGAACT 539
Query 722 TGACAGGATACTGTGTCGATAAAAGTCACCGGATGTTGATCTATGAGTTCATGAGTAATG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGACAGGATACTGTGTCGATAAAAGTCACCGGATGTTGATCTATGAGTTCATGAGTAATG 599
Query 782 GAAGTTTGGAGAATCTTTTGTATGGCGGTGAAGGAATGCAAGTCTTGAATTGGGAAGAGC 841
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 GAAGTTTGGAGAATCTTTTGTATGGCGGCGAAGGAATGCAAGTCTTGAATTGGGAAGAGC 659
Query 842 GGCTTCAAATCGCTCTTGACATCTCCCACGGCATTGAATACCTTCACGAAGGGGCCGTAC 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 GGCTTCAAATCGCTCTTGACATCTCCCACGGCATTGAATACCTTCACGAAGGGGCCGTGC 719
Query 902 CGCCAGTTATTCACCGTGATCTTAAGTCAGCAAACATTTTGTTAGATCATTCCATGAGAG 961
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 720 CGCCAGTTATTCACCGTGATCTTAAGTCAGCAAACATATTGTTAGATCACTCCATGAGAG 779
Query 962 CTAAGGTCGCGGATTTCGGGTTGTCGAAAGAGATGGTTTTAGATAGAATGACTTCCGGAT 1021
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTAAGGTTGCGGATTTCGGGTTGTCGAAAGAGATGGTTTTAGATAGAATGACTTCCGGAT 839
Query 1022 TGAAGGGTACTCACGGCTACATGGATCCAACATACATTTCGACTAACAAATACACGATGA 1081
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 TGAAGGGTACTCACGGATACATGGATCCAACATACATTTCGACTAACAAATACACAATGA 899
Query 1082 AGAGCGACATTTACAGTTTCGGTGTCATCATTCTTGAGCTCATTACTGCAATCCATCCCC 1141
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGAGCGACATTTATAGTTTCGGTGTCATCATTCTTGAGCTCATTACTGCAATCCATCCCC 959
Query 1142 AACAGAATCTGATGGAATACATCAACCTGGCTTCGATGAGTCCAGATGGTATCGACGAAA 1201
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 960 AACAGAATCTGATGGAATACGTCAACCTGGCTTCGATGAGTCCAGATGGTATCGACGAAA 1019
Query 1202 TACTCGATCAGAAACTAGTGGGAAACGCAAGCATTGAAGAAGTGAGGTTACTGGCGAAGA 1261
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 TACTCGATCAGAAACTAGTGGGAAATGCAAGCATTGAAGAAGTGAGGTTACTGGCGAAGA 1079
Query 1262 TTGCAAACAGGTGTGTGCATAAGACACCAAGAAAAAGACCATCTATTGGAGAAGTAACAC 1321
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1080 TTGCAAACAGGTGTGTGCATAAGACACCAAGAAAAAGACCATCCATTGGAGAAGTCACAC 1139
Query 1322 AGTTCATACTAAAGATCAAACAAAGTCGGTCTCGAGGAAGAAGACAGGACACGATGTCTT 1381
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1140 AATTCATACTAAAGATCAAACAAGGTCGGTCTCGAGGAAGAAGACAGGACACGATGTCTT 1199
Query 1382 CATCGTTTGGTGTTGGTTATGAGGAAGATCTGTCAAGGGTTATGAGCAGGATTAAGGATC 1441
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CATCATTTAGTGTTGGTTATGAGGAAGATCTGTCAAGGGTTATGAGCAGGATTAAGGATC 1259
Query 1442 AGCATGTTGAGTTAGGGTTATTGGCTGGTGTTAAGGAAGAGAATCATCAAGAGAGGAACA 1501
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1260 AACATGTTGAGTTAGGGTTATTGGCTGGTGTTAAGGAAGAAAATCATCAAGAGAGGAACA 1319
Query 1502 TTGCAACAACATAGTAACTCTTTACTT 1528
||| |||||||||||||||||||||||
Sbjct 1320 TTGGAACAACATAGTAACTCTTTACTT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5