BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15740.1
Length=2458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488418 jgi|Araly1|488418|fgenesh2_kg.6__1552__AT5G15740.1 3517 0.0
> Ahg488418 jgi|Araly1|488418|fgenesh2_kg.6__1552__AT5G15740.1
Length=2437
Score = 3517 bits (1904), Expect = 0.0
Identities = 2316/2497 (93%), Gaps = 99/2497 (4%)
Strand=Plus/Plus
Query 1 AAAGACTGCTTCttttttttttCCTCCTTGGTAG-AAAAAAGTTCTGAAATTTGCACATT 59
||||||||||| ||||| |||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1 AAAGACTGCTTATTTTTATTTTCCTCCTTGGTAGAAAAAAAGTGCTGAATTTTGCACATT 60
Query 60 CTTGTCTCtttttttCTCCACACCGAAATCTTCTCCCTATTTCTCCGACGTCCTTCTTCT 119
|||| || ||| | || |||||||||||||||||||||||||||
Sbjct 61 CTTG--TC------TCT-----------T-TT-TCCCTATTTCTCCGACGTCCTTCTTCT 99
Query 120 TCCTTCTCCGGTCAACACCGACCGGTTCTCCACGGAGACTCTCGTCTCCCAttttt-ttt 178
|| |||||||||||||||||||||||||| ||| || || || | | |||||| |||
Sbjct 100 TCATTCTCCGGTCAACACCGACCGGTTCTTCAC-GA-ACACTTACCACAAATTTTTATTT 157
Query 179 -tttGTACGGCTACTTTG---ATCGATCGCCATTGCTGAATTTCAAAGCCTTCT-CTGTG 233
||||||||||||||||| ||||||||||||||| ||||||||||||||||| || |
Sbjct 158 ATTTGTACGGCTACTTTGCTCATCGATCGCCATTGCGGAATTTCAAAGCCTTCTCCT-T- 215
Query 234 TCATTTTTTCTGTAACTGGAAGTGTGAGCTTCCATCAATTGAGAGTTGAAAGTTGACTCT 293
| | |||||||||||| ||||||||||||| |||||||| || | |||||
Sbjct 216 T-A--TTTTCTGTAACTTGAAGTGTGAGCTT-CATCAATT--GA---G--AGTTG----- 259
Query 294 TAATTAAAACCTgagagagagagagagaTTCTTC-T-TTTATTTAATAGAGCAAGATCTG 351
|||||| |||||||||||||| | |||||||||||||||||||||||
Sbjct 260 ------AAACCT--------GAGAGAGATTCTTCTTGTTTATTTAATAGAGCAAGATCTG 305
Query 352 GGTTTTAGTCAG---ATTATTAAGTCGAGATCATCGTGGGCTACTTTAAAACT-AAAAAT 407
|||||| ||||| ||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 306 GGTTTTCGTCAGATTATTATTAAGTCGA-A-GATCGTGGGCTACTTTAAAACTAAAAAAT 363
Query 408 CTGGGTTTTTCGAGGTGTGATTAATGCTCACAGATTTGTGTGGAGATTACATTTTCTCTG 467
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 364 CTGGGTTTTTCGAGGTGTGATTAATGCTCGCTGATTTGTGTGAAGATTACATTTTCTCTG 423
Query 468 AGTGTTATTAGAGAGGATAATT-AAAAGCTTGAGCACC-AAAC-----CTATTATATTG- 519
||||||||| ||||||||||| |||| |||||||||| |||| ||| |||||||
Sbjct 424 AGTGTTATT--AGAGGATAATTCAAAA-CTTGAGCACCAAAACTATTACTACTATATTGT 480
Query 520 TTT-CATTCCTGTCCTTTTAAATCTGCAG--TCTT---TT----AAGCTGTGG-TTAGTT 568
||| |||||||||||||||||||||||| | || || ||||||||| ||||||
Sbjct 481 TTTATATTCCTGTCCTTTTAAATCTGCAGTATTTTAAGTTGAAGAAGCTGTGGTTTAGTT 540
Query 569 TTTCCAGGCTTACCCTTTAAGTGTTCGATGAAATTCCTCTGAG-GGGTTTTGGGAACTGT 627
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 541 TTTCCAGGCTTACCCTTTAAGTGTTCGATGAAATTCCTCTGAGAGTGTTTTGGGAACTGA 600
Query 628 GAGAATCTTCTGTGAGAGT-GG--GGTTGGTGGGTGATATAG-AAAAATGTGTAAAATGG 683
||||| ||||||||||||| || |||||||||||||| | | |||||||||||||||||
Sbjct 601 GAGAAGCTTCTGTGAGAGTGGGTTGGTTGGTGGGTGATTTTGAAAAAATGTGTAAAATGG 660
Query 684 AGAAGTTTCTTTACCACAGGAAACTATGGGAGATGAATGTTAAGCTTTTAGGAGAGAGCA 743
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAAGTTTCTTTACCACAGGAAACTATGGGAGATGAATGTTAAGCTTTTAGGAGAGAGCA 720
Query 744 AAGTTGAGAAACTCAAGAACTCTTTTGTTTCGAGGCCTCGTATGAGCTTATGGATGATTC 803
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 721 AAGTTGAGAAACTCAAGAACTCTTTTGTTTCGAGGCCTCGTATGAGCCTATGGATGATAC 780
Query 804 GTGCTGTTACTGTATTGTTGCTTTGGAGCTGTTTTGTTCATTTGATGGCTTTGGGAGAGA 863
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 781 GTGCTGTTACTGTATTGTTGCTTTGGAGCTGTTTCGTTCATTTGATGGCTTTGGGAGAAA 840
Query 864 TGTGGGGACCAAGATTGTTTAAAGGTTGGCCTTCTTGTTTCAATCACCATCAACTGTCCA 923
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TGTGGGGACCAAGATTGTTTAAAGGTTGGCCTTCTTGTTTCAATCACCATGAACTGTCCA 900
Query 924 CTGCCGCAGAGATGACGTCTCTTCCTACCAAAATTGCTCTTCCACCTAAAAGGGTATATG 983
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 901 CTGCCGCAGAGATGACGTCTCTTCCCACTAAAATCGCTCTTCCACCTAAAAGGGTATATG 960
Query 984 TGAACAATGGTTATCTTATGGTTTCCTGCAATGGAGGACTCAATCAAATGCGAGCAGCTA 1043
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 TGAACAATGGTTATCTTGTGGTTTCCTGCAATGGAGGACTTAATCAAATGCGAGCAGCTA 1020
Query 1044 TATGTGATATGGTAACCGTTGCAAGATACATGAATGTTACACTTATTGTGCCGGAGCTTG 1103
|||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1021 TATGCGATATGGTAACTGTTGCAAGATACCTGAATGTCACACTTATTGTGCCGGAGCTTG 1080
Query 1104 ACAAGACCTCTTTTTGGAACGATCCAAGTGAGTTTAAAGACATATTCGATGTGGATCACT 1163
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACAAGACCTCGTTTTGGAACGATCCAAGTGAGTTTAAAGACATATTCGATGTGGATCACT 1140
Query 1164 TCATAAGTTCGTTAAGAGATGAAGTTCGGATACTCAAAGAGTTACCTCCAAGGCTTAAGA 1223
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCATAAGTTCGTTGAGAGATGAAGTTCGGATACTCAAAGAGTTACCTCCAAGGCTTAAGA 1200
Query 1224 AAAGGGTTGAGCTTGGAGTGTACCACGAAATGCCTCCTATTAGTTGGTCAAACATGTCTT 1283
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAAGGGTTGAGCTTGGAATGTACCACGAAATGCCTCCTATTAGTTGGTCAAACATGTCTT 1260
Query 1284 ACTACCAAAATCAGATTCTTCCACTGGTGAAAAAACATAAGGTTTTACATCTGAACAGAA 1343
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1261 ACTACCAGAATCAGATTCTTCCACTGGTGAAGAAACATAAGGTTTTACATCTGAACAAAA 1320
Query 1344 CGGATACCCGACTTGCTAATAATGGACTGCCTGTGGAGGTTCAGAAGCTGAGGTGCCGAG 1403
||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1321 CGGATACTCGACTCGCTAATAATGAACTGCCTGTAGAGGTTCAGAAGCTGAGGTGCCGAG 1380
Query 1404 TAAATTTCAATGGGCTTAAGTTTACTCCTCAGATTGAGGAATTAGGTAGACGAGTAGTCA 1463
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TAAATTTCAACGGGCTTAAGTTTACTCCTCAGATTGAGGAATTAGGTAGACGAGTAGTCA 1440
Query 1464 AGATTCTGAGAGAGAAAGGTCCCTTTCTTGTCCTGCATCTCAGATATGAGATGGATATGT 1523
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1441 AGATTCTGAGAGAGAAAGGTCCCTTTCTTGTCCTGCATCTCAGATATGAAATGGATATGT 1500
Query 1524 TAGCATTTTCTGGTTGTTCACATGGTTGCAACCCCGAGGAAGAAGAAGAACTAACAAGAA 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TAGCATTTTCTGGTTGTTCACATGGTTGCAACCCCGAGGAAGAAGAAGAACTAACAAGAA 1560
Query 1584 TGAGATATGCTTATCCATGGTGGAAAGAGAAAGTCATAAACTCTGAGCTGAAGAGGAAAG 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TGAGATATGCTTATCCATGGTGGAAAGAGAAAGTCATAAACTCTGAGCTGAAGAGGAAAG 1620
Query 1644 ATGGCCTTTGCCCTTTAACTCCTGAGGAAACCGCTCTCACTCTGACCGCGTTGGGTATTG 1703
||||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1621 ATGGCCTCTGCCCTTTGACTCCTGAGGAAACTGCTCTCACTCTGACTGCTTTGGGTATTG 1680
Query 1704 ACCGAAATGTTCAAATTTACATAGCTGCTGGAGAAATCTATGGTGGTCAAAGGCGGATGA 1763
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ACCGAAATGTTCAAATATACATAGCTGCTGGAGAAATCTATGGTGGTCAAAGGCGGATGA 1740
Query 1764 AGGCTTTAACAGACGCTTTTCCAAATGTGGTCCGGAAAGAAACCCTACTCGAATCCTCTG 1823
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1741 AGGCTTTAACAGACGCTTTTCCAAATGTGGTCAGGAAAGAAACCCTACTTGAATCCTCTG 1800
Query 1824 ATCTGGATTTTTGCCGGAACCATTCATCTCAAATGGCTGCACTTGATTACCTAGTGGCAC 1883
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1801 ATCTGGATTTTTGCCGGAATCATTCATCGCAAATGGCTGCACTTGATTACCTAGTGGCTC 1860
Query 1884 TTGAGAGCGACATATTTGTTCCAACCAATGATGGGAACATGGCAAGAGTTGTTGAAGGTC 1943
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1861 TTGAGAGCGATATATTTGTTCCAACCAATGATGGGAACATGGCAAGAGTCGTTGAAGGTC 1920
Query 1944 ATCGCAGATTCTTGGGGTTCAAGAAGACAATCCAGCTGAATAGGAGGTTCCTAGTTAAGC 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 ATCGCAGATTCTTGGGGTTCAAGAAGACAATCCAGCTGAATAGGAGGTTCCTAGTTAAGC 1980
Query 2004 TGATAGATGAGTATACTGAAGGATTGTTGAGTTGGGATGTATTTTCATCCACGGTGAAGG 2063
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 TGATAGATGAATATACTGAAGGATTGTTGAGTTGGGATGTATTTTCATCCACGGTGAAGG 2040
Query 2064 CATTTCACTCTACTCGAATGGGAAGCCCTAAGAGACGGTTAGTGATTCCCAATAGACCCA 2123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2041 CATTTCACTCTACTCGAATGGGAAGCCCTAAGAGACGGTTAGTGATTCCCAATAGACCGA 2100
Query 2124 AGGAAGAAGACTACTTCTACGCCAACCCACAAGAATGTCTGCAGCTGTTAGATGAACCAT 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 AGGAAGAAGACTACTTCTACGCCAACCCACAAGAATGTCTGCAGCTGTTAGATGAACCAT 2160
Query 2184 TGAGAGTCATTTGAGAATGTGACTCCACCACTGGCGAGAGAACAGCTTGAAAGAGGAATT 2243
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2161 TGAGAGTCATTTGAGAATGTGACTTCACCACTGGCGAGAGAACAGCTTGAAAGATGAATT 2220
Query 2244 TACAGTGAGTTTTACAGATTGAAGTTATTTAGTGTTCTTGGTGTAGAGATTTCTGAAAGA 2303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2221 TACAGTGAGTTTTACAGATTGAAGTTATTTAGTGTTCTTGGTATAGAGATTTCTGAAAGA 2280
Query 2304 GCTTCCATGGATGGAGATTAGAA-TGTTGATTAAAGCTTACACTGTAAAGTTTGGCATCC 2362
|||||||||||| ||| ||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 2281 GCTTCCATGGATAGAGGGTAGAAATGTTGATTAAAGTTTACATTGTAAAGTTTGGCATCC 2340
Query 2363 ATGGCCTTGCCAGTTTTGTTAGCTAAATAATAAGTGCCATTTTGTGTAATTAAA-CCTTG 2421
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2341 ATGGCCTTGCCAGTTTTGTTAGCTAAATAATAAGTGCCATTTTGTGTAATTAAAACCTTG 2400
Query 2422 GTTACAGATATATATTTTTCATATTAtttttttCTCT 2458
||||||||||||||| ||||| |||||| |||||||
Sbjct 2401 GTTACAGATATATATATTTCAGATTATTACTTTCTCT 2437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92635475840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5