BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15750.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488419 jgi|Araly1|488419|fgenesh2_kg.6__1553__AT5G15750.1 1251 0.0
> Ahg488419 jgi|Araly1|488419|fgenesh2_kg.6__1553__AT5G15750.1
Length=818
Score = 1251 bits (677), Expect = 0.0
Identities = 776/823 (94%), Gaps = 9/823 (1%)
Strand=Plus/Plus
Query 3 GGACCGTCGGATTTATCTGACTTCCTCTCCTTCGATTAGGGTTTCTGAATTACTACTCCT 62
|||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||
Sbjct 1 GGACCGTCGGATTTATCTGACTTCTTCTCCTTCAATTAGGGTTTCTGAATTGCT--TCCT 58
Query 63 CTGCCAATTAGGGTTTAAGCCTCTCCAGCATTTTCTTTCAGCTCAAACCCAAGAACCTCA 122
||||| |||||||||| ||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 59 CTGCCGATTAGGGTTTTAGCGTCTCTAGCATTTTCTTTCAGCTCAAACCCAAAAACCTCA 118
Query 123 TCGCCGATTATTTCTTCATCCTTACTCTATCCCGCGCCGATTAATCTCTCTCAGTACCGT 182
||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 119 TCGCCGAGTATTTCTTCATCGTTACTCTACCCCGCGCCGATTAATCTCTCTCAGAACCGT 178
Query 183 CCGAGATGAGAAAGCTCAAGTATCACGAGAAGAAGCTTATAAAGAAAGTAAATTTCTTAG 242
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCCAGATGAGGAAGCTCAAGTATCACGAGAAGAAGCTTATAAAGAAAGTAAATTTCTTAG 238
Query 243 AATGGAAAAGAGAAGGTAACCATCGGGAAAACGAGATTACGTATCGATACCACATGGGCT 302
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 AATGGAAAAGAGAAGATAACCATCGGGAAAACGAGATTACGTATCGTTACCACATGGGCT 298
Query 303 CTCGTGATGATTACAAAAAGTATTCAGGATTGTGTAGGATGGTGCAGAAACTGACGAATA 362
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 CTCGTGATGATTACAAAAAGTATTCAGGATTGTGTAGGATGGCGCAGAAACTGACGAATA 358
Query 363 TAATGAAACAAATGGATCCAGCAGATCCTTTTCGTATTCAGATGACTGATATGCTTTTGG 422
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TATTGAAACAAATGGATCCCGCAGATCCTTTTCGTATTCAGATGACTGATATGCTTTTGG 418
Query 423 AGAAGCTATATAACATGGGTGTTATACCGACTAGGAAAAGCTTGACTCTAACTGAGCGGT 482
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 419 AGAAGCTATATAACATGGGTGTTATACCGACTAGGAAAAGCTTGGCTTTAACTGAGCGGT 478
Query 483 TATCAGTTTCATCCTTCTGTAGGCGTAGGCTATCTACTGTGCTGGTTCACCTGAAGTTTG 542
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 479 TATCAGTTTCATCCTTCTGTAGGCGTAGGCTATCGACTGTACTGGTTCACCTGAAGTTTG 538
Query 543 CAGAGCACCACAAAGAAGCTGTGACATACATAGAGCAAGGACACGTTCGTGTAGGACCAG 602
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 539 CAGAGCACAACAAAGAAGCTGTGACATACATAGAGCAAGGACACATTCGTGTAGGACCAG 598
Query 603 AAACAATTACTGATCCAGCTTTCTTAGTAACTCGGAACATGGAAGATTTCATCACTTGGG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAACAATTACTGATCCAGCTTTCTTAGTAACTCGGAACATGGAAGATTTCATCACTTGGG 658
Query 663 TTGATTCATCCAAGATTAAACGAAAGGTTCTTGAGTACAATGACACATTGGATGATTATG 722
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 659 TTGATTCTTCCAAGATTAAACGAAAGGTTCTTCAGTACAATGACAAATTGGATGATTATG 718
Query 723 ACATGCTTGCTTAGCTTTGAGGAAGTT--AAAAAA--GACTGATGTTTTGTAAAAGCCAA 778
||||| ||||||| ||||||||| ||| |||||| ||||||||| |||||| ||| |
Sbjct 719 ACATGATTGCTTAACTTTGAGGAGGTTTTAAAAAAAAGACTGATGTCTTGTAATAGCTAT 778
Query 779 AAAAGGTTCACTGCTACTACTATTGCAGGGTTTGTTTGGATTT 821
||||||||| ||||||| | | |||||||||||||||||||
Sbjct 779 GAAAGGTTCAGTGCTACTG-T-T-GCAGGGTTTGTTTGGATTT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5